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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 75 |
| AccB1I | GGYRCC | 1 cut(s) | 165 |
| AccBSI | CCGCTC | 2 cut(s) | 808, 886 |
| AccII | CGCG | 4 cut(s) | 447, 487, 644, 654 |
| AcsI | RAATTY | 2 cut(s) | 81, 117 |
| AcyI | GRCGYC | 2 cut(s) | 166, 243 |
| AfaI | GTAC | 1 cut(s) | 583 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 520, 654, 655, 766 |
| AflIII | ACRYGT | 1 cut(s) | 129 |
| AgsI | TTSAA | 2 cut(s) | 353, 724 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 693 |
| AjnI | CCWGG | 2 cut(s) | 393, 508 |
| AluBI | AGCT | 6 cut(s) | 356, 362, 751, 814, 856, 907 |
| AluI | AGCT | 6 cut(s) | 356, 362, 751, 814, 856, 907 |
| Alw21I | GWGCWC | 2 cut(s) | 375, 753 |
| Alw26I | GTCTC | 1 cut(s) | 581 |
| Ama87I | CYCGRG | 1 cut(s) | 519 |
| AoxI | GGCC | 5 cut(s) | 100, 497, 511, 729, 786 |
| ApeKI | GCWGC | 5 cut(s) | 205, 302, 415, 544, 811 |
| ApoI | RAATTY | 2 cut(s) | 81, 117 |
| AspLEI | GCGC | 3 cut(s) | 168, 433, 447 |
| AspS9I | GGNCC | 6 cut(s) | 185, 262, 450, 512, 598, 687 |
| AsuC2I | CCSGG | 2 cut(s) | 520, 521 |
| AsuHPI | GGTGA | 3 cut(s) | 241, 380, 581 |
| AvaI | CYCGRG | 1 cut(s) | 519 |
| AvaII | GGWCC | 5 cut(s) | 185, 262, 450, 598, 687 |
| BanI | GGYRCC | 1 cut(s) | 165 |
| BanII | GRGCYC | 1 cut(s) | 753 |
| BauI | CACGAG | 2 cut(s) | 327, 846 |
| Bbv12I | GWGCWC | 2 cut(s) | 375, 753 |
| BbvI | GCAGC | 5 cut(s) | 192, 289, 427, 531, 823 |
| BccI | CCATC | 3 cut(s) | 139, 677, 875 |
| BceAI | ACGGC | 3 cut(s) | 222, 557, 703 |
| BciT130I | CCWGG | 2 cut(s) | 395, 510 |
| BcnI | CCSGG | 2 cut(s) | 520, 521 |
| BcoDI | GTCTC | 1 cut(s) | 581 |
| BfaI | CTAG | 1 cut(s) | 910 |
| BfmI | CTRYAG | 2 cut(s) | 545, 707 |
| BfoI | RGCGCY | 2 cut(s) | 169, 434 |
| BfuAI | ACCTGC | 1 cut(s) | 75 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 794 |
| BisI | GCNGC | 8 cut(s) | 21, 206, 303, 416, 485, 545, 809, 812 |
| BlpI | GCTNAGC | 1 cut(s) | 815 |
| BlsI | GCNGC | 8 cut(s) | 22, 207, 304, 417, 486, 546, 810, 813 |
| Bme1390I | CCNGG | 4 cut(s) | 395, 510, 520, 521 |
| Bme18I | GGWCC | 5 cut(s) | 185, 262, 450, 598, 687 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 693 |
| BmeT110I | CYCGRG | 1 cut(s) | 519 |
| BmgT120I | GGNCC | 6 cut(s) | 185, 262, 450, 512, 598, 687 |
| BmiI | GGNNCC | 9 cut(s) | 167, 186, 392, 451, 452, 483, 599, 627, 688 |
| BmrFI | CCNGG | 4 cut(s) | 395, 510, 520, 521 |
| BmsI | GCATC | 1 cut(s) | 823 |
| BpmI | CTGGAG | 1 cut(s) | 378 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 815 |
| BpuEI | CTTGAG | 2 cut(s) | 308, 902 |
| BpuMI | CCSGG | 2 cut(s) | 520, 521 |
| BsaBI | GATNNNNATC | 1 cut(s) | 149 |
| BsaHI | GRCGYC | 2 cut(s) | 166, 243 |
| BsaI | GGTCTC | 1 cut(s) | 581 |
| BsaJI | CCNNGG | 5 cut(s) | 46, 192, 519, 652, 837 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 520, 654, 655, 766 |
| Bse118I | RCCGGY | 1 cut(s) | 383 |
| Bse1I | ACTGG | 4 cut(s) | 344, 461, 583, 777 |
| Bse3DI | GCAATG | 1 cut(s) | 264 |
| Bse8I | GATNNNNATC | 1 cut(s) | 149 |
| BseBI | CCWGG | 2 cut(s) | 395, 510 |
| BseDI | CCNNGG | 5 cut(s) | 46, 192, 519, 652, 837 |
| BseJI | GATNNNNATC | 1 cut(s) | 149 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 520, 654, 655, 766 |
| BseMI | GCAATG | 1 cut(s) | 264 |
| BseMII | CTCAG | 3 cut(s) | 455, 797, 806 |
| BseNI | ACTGG | 4 cut(s) | 344, 461, 583, 777 |
| BseRI | GAGGAG | 1 cut(s) | 578 |
| BseXI | GCAGC | 5 cut(s) | 192, 289, 427, 531, 823 |
| BseYI | CCCAGC | 2 cut(s) | 453, 664 |
| BsgI | GTGCAG | 2 cut(s) | 191, 434 |
| Bsh1236I | CGCG | 4 cut(s) | 447, 487, 644, 654 |
| BshFI | GGCC | 5 cut(s) | 102, 499, 513, 731, 788 |
| BshNI | GGYRCC | 1 cut(s) | 165 |
| BsiHKAI | GWGCWC | 2 cut(s) | 375, 753 |
| BsiHKCI | CYCGRG | 1 cut(s) | 519 |
| BsiSI | CCGG | 2 cut(s) | 384, 520 |
| BslFI | GGGAC | 2 cut(s) | 436, 700 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 520, 654, 655, 766 |
| BsmAI | GTCTC | 1 cut(s) | 581 |
| BsmFI | GGGAC | 2 cut(s) | 436, 700 |
| BsnI | GGCC | 5 cut(s) | 102, 499, 513, 731, 788 |
| Bso31I | GGTCTC | 1 cut(s) | 581 |
| BsoBI | CYCGRG | 1 cut(s) | 519 |
| Bsp1286I | GDGCHC | 2 cut(s) | 375, 753 |
| Bsp143I | GATC | 2 cut(s) | 150, 892 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 815 |
| BspANI | GGCC | 5 cut(s) | 102, 499, 513, 731, 788 |
| BspCNI | CTCAG | 3 cut(s) | 454, 796, 807 |
| BspFNI | CGCG | 4 cut(s) | 447, 487, 644, 654 |
| BspHI | TCATGA | 1 cut(s) | 28 |
| BspLI | GGNNCC | 9 cut(s) | 167, 186, 392, 451, 452, 483, 599, 627, 688 |
| BspMAI | CTGCAG | 1 cut(s) | 549 |
| BspMI | ACCTGC | 1 cut(s) | 75 |
| BspT107I | GGYRCC | 1 cut(s) | 165 |
| BspTNI | GGTCTC | 1 cut(s) | 581 |
| BsrBI | CCGCTC | 2 cut(s) | 808, 886 |
| BsrDI | GCAATG | 1 cut(s) | 264 |
| BsrFI | RCCGGY | 1 cut(s) | 383 |
| BsrI | ACTGG | 4 cut(s) | 344, 461, 583, 777 |
| BssAI | RCCGGY | 1 cut(s) | 383 |
| BssECI | CCNNGG | 5 cut(s) | 46, 192, 519, 652, 837 |
| BssMI | GATC | 2 cut(s) | 150, 892 |
| BssNI | GRCGYC | 2 cut(s) | 166, 243 |
| BssSI | CACGAG | 2 cut(s) | 327, 846 |
| BssT1I | CCWWGG | 1 cut(s) | 46 |
| Bst2BI | CACGAG | 2 cut(s) | 327, 846 |
| Bst2UI | CCWGG | 2 cut(s) | 395, 510 |
| Bst4CI | ACNGT | 4 cut(s) | 193, 266, 637, 703 |
| BstACI | GRCGYC | 2 cut(s) | 166, 243 |
| BstC8I | GCNNGC | 6 cut(s) | 18, 235, 364, 385, 435, 854 |
| BstDEI | CTNAG | 3 cut(s) | 441, 783, 815 |
| BstDSI | CCRYGG | 2 cut(s) | 192, 652 |
| BstFNI | CGCG | 4 cut(s) | 447, 487, 644, 654 |
| BstH2I | RGCGCY | 2 cut(s) | 169, 434 |
| BstHHI | GCGC | 3 cut(s) | 168, 433, 447 |
| BstKTI | GATC | 2 cut(s) | 153, 895 |
| BstMAI | GTCTC | 1 cut(s) | 581 |
| BstMBI | GATC | 2 cut(s) | 150, 892 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 17, 99, 311, 404, 794, 842 |
| BstNI | CCWGG | 2 cut(s) | 395, 510 |
| BstNSI | RCATGY | 3 cut(s) | 20, 133, 298 |
| BstSCI | CCNGG | 4 cut(s) | 393, 508, 518, 519 |
| BstSFI | CTRYAG | 2 cut(s) | 545, 707 |
| BstUI | CGCG | 4 cut(s) | 447, 487, 644, 654 |
| BstV1I | GCAGC | 5 cut(s) | 192, 289, 427, 531, 823 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 259 |
| BsuRI | GGCC | 5 cut(s) | 102, 499, 513, 731, 788 |
| BtgI | CCRYGG | 2 cut(s) | 192, 652 |
| BtsIMutI | CAGTG | 2 cut(s) | 576, 642 |
| BveI | ACCTGC | 1 cut(s) | 75 |
| Cac8I | GCNNGC | 6 cut(s) | 18, 235, 364, 385, 435, 854 |
| CciI | TCATGA | 1 cut(s) | 28 |
| CfoI | GCGC | 3 cut(s) | 168, 433, 447 |
| Cfr10I | RCCGGY | 1 cut(s) | 383 |
| Cfr13I | GGNCC | 6 cut(s) | 185, 262, 450, 512, 598, 687 |
| Cfr42I | CCGCGG | 1 cut(s) | 655 |
| Cfr9I | CCCGGG | 1 cut(s) | 519 |
| CseI | GACGC | 2 cut(s) | 251, 851 |
| Csp6I | GTAC | 1 cut(s) | 582 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 177, 212 |
| CviAII | CATG | 5 cut(s) | 17, 29, 130, 295, 377 |
| CviQI | GTAC | 1 cut(s) | 582 |
| DdeI | CTNAG | 3 cut(s) | 441, 783, 815 |
| DinI | GGCGCC | 1 cut(s) | 167 |
| DpnI | GATC | 2 cut(s) | 152, 894 |
| DpnII | GATC | 2 cut(s) | 150, 892 |
| DriI | GACNNNNNGTC | 1 cut(s) | 693 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 693 |
| EciI | GGCGGA | 5 cut(s) | 32, 590, 618, 690, 839 |
| Ecl136II | GAGCTC | 1 cut(s) | 751 |
| Eco130I | CCWWGG | 1 cut(s) | 46 |
| Eco147I | AGGCCT | 1 cut(s) | 499 |
| Eco24I | GRGCYC | 1 cut(s) | 753 |
| Eco31I | GGTCTC | 1 cut(s) | 581 |
| Eco47I | GGWCC | 5 cut(s) | 185, 262, 450, 598, 687 |
| Eco53kI | GAGCTC | 1 cut(s) | 751 |
| Eco88I | CYCGRG | 1 cut(s) | 519 |
| EcoICRI | GAGCTC | 1 cut(s) | 751 |
| EcoO109I | RGGNCCY | 2 cut(s) | 450, 687 |
| EcoRII | CCWGG | 2 cut(s) | 393, 508 |
| EcoT14I | CCWWGG | 1 cut(s) | 46 |
| EcoT38I | GRGCYC | 1 cut(s) | 753 |
| EgeI | GGCGCC | 1 cut(s) | 167 |
| EheI | GGCGCC | 1 cut(s) | 167 |
| ErhI | CCWWGG | 1 cut(s) | 46 |
| FaeI | CATG | 5 cut(s) | 20, 32, 133, 298, 380 |
| FaqI | GGGAC | 2 cut(s) | 436, 700 |
| FatI | CATG | 5 cut(s) | 16, 28, 129, 294, 376 |
| FauI | CCCGC | 7 cut(s) | 4, 380, 440, 466, 647, 659, 756 |
| Fnu4HI | GCNGC | 8 cut(s) | 21, 206, 303, 416, 485, 545, 809, 812 |
| FriOI | GRGCYC | 1 cut(s) | 753 |
| Fsp4HI | GCNGC | 8 cut(s) | 21, 206, 303, 416, 485, 545, 809, 812 |
| FspBI | CTAG | 1 cut(s) | 910 |
| GlaI | GCGC | 3 cut(s) | 167, 432, 446 |
| GluI | GCNGC | 8 cut(s) | 21, 206, 303, 416, 485, 545, 809, 812 |
| GsaI | CCCAGC | 2 cut(s) | 457, 668 |
| GsuI | CTGGAG | 1 cut(s) | 378 |
| HaeII | RGCGCY | 2 cut(s) | 169, 434 |
| HaeIII | GGCC | 5 cut(s) | 102, 499, 513, 731, 788 |
| HapII | CCGG | 2 cut(s) | 384, 520 |
| HgaI | GACGC | 2 cut(s) | 251, 851 |
| HhaI | GCGC | 3 cut(s) | 168, 433, 447 |
| Hin1I | GRCGYC | 2 cut(s) | 166, 243 |
| Hin1II | CATG | 5 cut(s) | 20, 32, 133, 298, 380 |
| Hin6I | GCGC | 3 cut(s) | 166, 431, 445 |
| HinP1I | GCGC | 3 cut(s) | 166, 431, 445 |
| HincII | GTYRAC | 1 cut(s) | 37 |
| HindII | GTYRAC | 1 cut(s) | 37 |
| HinfI | GANTC | 2 cut(s) | 669, 779 |
| HpaII | CCGG | 2 cut(s) | 384, 520 |
| HphI | GGTGA | 3 cut(s) | 241, 380, 581 |
| Hpy166II | GTNNAC | 1 cut(s) | 37 |
| Hpy188I | TCNGA | 2 cut(s) | 748, 841 |
| Hpy188III | TCNNGA | 2 cut(s) | 29, 287 |
| Hpy8I | GTNNAC | 1 cut(s) | 37 |
| Hpy99I | CGWCG | 1 cut(s) | 338 |
| HpyAV | CCTTC | 2 cut(s) | 256, 700 |
| HpyCH4III | ACNGT | 4 cut(s) | 193, 266, 637, 703 |
| HpyCH4V | TGCA | 4 cut(s) | 208, 415, 532, 547 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 17, 99, 311, 404, 794, 842 |
| HpyF3I | CTNAG | 3 cut(s) | 441, 783, 815 |
| Hsp92I | GRCGYC | 2 cut(s) | 166, 243 |
| Hsp92II | CATG | 5 cut(s) | 20, 32, 133, 298, 380 |
| HspAI | GCGC | 3 cut(s) | 166, 431, 445 |
| KasI | GGCGCC | 1 cut(s) | 165 |
| KflI | GGGWCCC | 1 cut(s) | 450 |
| KroI | GCCGGC | 1 cut(s) | 383 |
| KroNI | GCCGGC | 1 cut(s) | 385 |
| KspI | CCGCGG | 1 cut(s) | 655 |
| Kzo9I | GATC | 2 cut(s) | 150, 892 |
| LmnI | GCTCC | 6 cut(s) | 359, 390, 481, 511, 631, 805 |
| Lsp1109I | GCAGC | 5 cut(s) | 192, 289, 427, 531, 823 |
| LweI | GCATC | 1 cut(s) | 823 |
| MaeI | CTAG | 1 cut(s) | 910 |
| MaeIII | GTNAC | 5 cut(s) | 52, 239, 463, 490, 637 |
| MalI | GATC | 2 cut(s) | 152, 894 |
| MbiI | CCGCTC | 2 cut(s) | 808, 886 |
| MboI | GATC | 2 cut(s) | 150, 892 |
| MboII | GAAGA | 1 cut(s) | 622 |
| MfeI | CAATTG | 1 cut(s) | 468 |
| MhlI | GDGCHC | 2 cut(s) | 375, 753 |
| MluCI | AATT | 4 cut(s) | 81, 117, 280, 468 |
| Mly113I | GGCGCC | 1 cut(s) | 166 |
| MmeI | TCCRAC | 3 cut(s) | 212, 459, 722 |
| MnlI | CCTC | 9 cut(s) | 25, 113, 175, 193, 489, 556, 559, 654, 847 |
| MroNI | GCCGGC | 1 cut(s) | 383 |
| MslI | CAYNNNNRTG | 1 cut(s) | 213 |
| MspA1I | CMGCKG | 3 cut(s) | 11, 654, 814 |
| MspI | CCGG | 2 cut(s) | 384, 520 |
| MspR9I | CCNGG | 4 cut(s) | 395, 510, 520, 521 |
| MunI | CAATTG | 1 cut(s) | 468 |
| MvaI | CCWGG | 2 cut(s) | 395, 510 |
| MvnI | CGCG | 4 cut(s) | 447, 487, 644, 654 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 17, 99, 311, 404, 794, 842 |
| NaeI | GCCGGC | 1 cut(s) | 385 |
| NarI | GGCGCC | 1 cut(s) | 166 |
| NciI | CCSGG | 2 cut(s) | 520, 521 |
| NdeII | GATC | 2 cut(s) | 150, 892 |
| NgoMIV | GCCGGC | 1 cut(s) | 383 |
| NlaIII | CATG | 5 cut(s) | 20, 32, 133, 298, 380 |
| NlaIV | GGNNCC | 9 cut(s) | 167, 186, 392, 451, 452, 483, 599, 627, 688 |
| NmeAIII | GCCGAG | 2 cut(s) | 295, 707 |
| NmuCI | GTSAC | 4 cut(s) | 52, 239, 490, 637 |
| NspI | RCATGY | 3 cut(s) | 20, 133, 298 |
| PaeI | GCATGC | 1 cut(s) | 20 |
| PagI | TCATGA | 1 cut(s) | 28 |
| PceI | AGGCCT | 1 cut(s) | 499 |
| PciI | ACATGT | 1 cut(s) | 129 |
| PdiI | GCCGGC | 1 cut(s) | 385 |
| PfeI | GAWTC | 2 cut(s) | 669, 779 |
| PkrI | GCNGC | 8 cut(s) | 22, 207, 304, 417, 486, 546, 810, 813 |
| PluTI | GGCGCC | 1 cut(s) | 169 |
| PpuMI | RGGWCCY | 2 cut(s) | 450, 687 |
| PscI | ACATGT | 1 cut(s) | 129 |
| Psp124BI | GAGCTC | 1 cut(s) | 753 |
| Psp5II | RGGWCCY | 2 cut(s) | 450, 687 |
| Psp6I | CCWGG | 2 cut(s) | 393, 508 |
| PspFI | CCCAGC | 2 cut(s) | 453, 664 |
| PspGI | CCWGG | 2 cut(s) | 393, 508 |
| PspN4I | GGNNCC | 9 cut(s) | 167, 186, 392, 451, 452, 483, 599, 627, 688 |
| PspPI | GGNCC | 6 cut(s) | 185, 262, 450, 512, 598, 687 |
| PspPPI | RGGWCCY | 2 cut(s) | 450, 687 |
| PstI | CTGCAG | 1 cut(s) | 549 |
| PvuII | CAGCTG | 1 cut(s) | 814 |
| RsaI | GTAC | 1 cut(s) | 583 |
| RsaNI | GTAC | 1 cut(s) | 582 |
| RseI | CAYNNNNRTG | 1 cut(s) | 213 |
| SacI | GAGCTC | 1 cut(s) | 753 |
| SacII | CCGCGG | 1 cut(s) | 655 |
| SatI | GCNGC | 8 cut(s) | 21, 206, 303, 416, 485, 545, 809, 812 |
| Sau3AI | GATC | 2 cut(s) | 150, 892 |
| Sau96I | GGNCC | 6 cut(s) | 185, 262, 450, 512, 598, 687 |
| ScrFI | CCNGG | 4 cut(s) | 395, 510, 520, 521 |
| SduI | GDGCHC | 2 cut(s) | 375, 753 |
| SfaNI | GCATC | 1 cut(s) | 823 |
| SfcI | CTRYAG | 2 cut(s) | 545, 707 |
| SfoI | GGCGCC | 1 cut(s) | 167 |
| Sfr303I | CCGCGG | 1 cut(s) | 655 |
| SgrBI | CCGCGG | 1 cut(s) | 655 |
| SinI | GGWCC | 5 cut(s) | 185, 262, 450, 598, 687 |
| SmaI | CCCGGG | 1 cut(s) | 521 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 213 |
| SmlI | CTYRAG | 2 cut(s) | 287, 881 |
| SmoI | CTYRAG | 2 cut(s) | 287, 881 |
| SphI | GCATGC | 1 cut(s) | 20 |
| Sse9I | AATT | 4 cut(s) | 81, 117, 280, 468 |
| SseBI | AGGCCT | 1 cut(s) | 499 |
| SspDI | GGCGCC | 1 cut(s) | 165 |
| SspMI | CTAG | 1 cut(s) | 910 |
| SstI | GAGCTC | 1 cut(s) | 753 |
| StuI | AGGCCT | 1 cut(s) | 499 |
| StyD4I | CCNGG | 4 cut(s) | 393, 508, 518, 519 |
| StyI | CCWWGG | 1 cut(s) | 46 |
| TaaI | ACNGT | 4 cut(s) | 193, 266, 637, 703 |
| TaqI | TCGA | 1 cut(s) | 753 |
| TasI | AATT | 4 cut(s) | 81, 117, 280, 468 |
| TauI | GCSGC | 3 cut(s) | 23, 487, 811 |
| TfiI | GAWTC | 2 cut(s) | 669, 779 |
| TscAI | CASTG | 2 cut(s) | 583, 642 |
| TseFI | GTSAC | 4 cut(s) | 52, 239, 490, 637 |
| TseI | GCWGC | 5 cut(s) | 205, 302, 415, 544, 811 |
| Tsp45I | GTSAC | 4 cut(s) | 52, 239, 490, 637 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 3 cut(s) | 351, 599, 683 |
| TspMI | CCCGGG | 1 cut(s) | 519 |
| TspRI | CASTG | 2 cut(s) | 583, 642 |
| VpaK11BI | GGWCC | 5 cut(s) | 185, 262, 450, 598, 687 |
| XapI | RAATTY | 2 cut(s) | 81, 117 |
| XceI | RCATGY | 3 cut(s) | 20, 133, 298 |
| XmaI | CCCGGG | 1 cut(s) | 519 |
| XspI | CTAG | 1 cut(s) | 910 |