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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 337 |
| AccB1I | GGYRCC | 2 cut(s) | 459, 561 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 159 |
| AccI | GTMKAC | 1 cut(s) | 98 |
| AccII | CGCG | 1 cut(s) | 516 |
| AccIII | TCCGGA | 2 cut(s) | 190, 327 |
| AcyI | GRCGYC | 1 cut(s) | 543 |
| AfaI | GTAC | 1 cut(s) | 122 |
| AfeI | AGCGCT | 1 cut(s) | 262 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 61, 159, 231, 282, 506, 517, 557 |
| AflIII | ACRYGT | 1 cut(s) | 48 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 310, 769 |
| AjiI | CACGTC | 1 cut(s) | 49 |
| Alw26I | GTCTC | 2 cut(s) | 499, 734 |
| Ama87I | CYCGRG | 2 cut(s) | 22, 318 |
| Aor13HI | TCCGGA | 2 cut(s) | 190, 327 |
| Aor51HI | AGCGCT | 1 cut(s) | 262 |
| AoxI | GGCC | 3 cut(s) | 315, 357, 508 |
| ApeKI | GCWGC | 2 cut(s) | 263, 369 |
| AspLEI | GCGC | 1 cut(s) | 263 |
| AspS9I | GGNCC | 3 cut(s) | 316, 322, 330 |
| AsuC2I | CCSGG | 4 cut(s) | 40, 319, 320, 500 |
| AsuHPI | GGTGA | 2 cut(s) | 108, 724 |
| AsuNHI | GCTAGC | 3 cut(s) | 5, 247, 266 |
| AvaI | CYCGRG | 2 cut(s) | 22, 318 |
| AvaII | GGWCC | 2 cut(s) | 322, 330 |
| BaeGI | GKGCMC | 1 cut(s) | 462 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 606, 639 |
| BanI | GGYRCC | 2 cut(s) | 459, 561 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 388, 420 |
| BbsI | GAAGAC | 1 cut(s) | 309 |
| BbvI | GCAGC | 2 cut(s) | 250, 356 |
| BccI | CCATC | 1 cut(s) | 598 |
| BceAI | ACGGC | 2 cut(s) | 360, 759 |
| BciVI | GTATCC | 1 cut(s) | 607 |
| BcnI | CCSGG | 4 cut(s) | 40, 319, 320, 500 |
| BcoDI | GTCTC | 2 cut(s) | 499, 734 |
| BfaI | CTAG | 6 cut(s) | 6, 131, 183, 201, 248, 267 |
| BfoI | RGCGCY | 1 cut(s) | 264 |
| BfuI | GTATCC | 1 cut(s) | 607 |
| BglII | AGATCT | 1 cut(s) | 18 |
| Bme1390I | CCNGG | 4 cut(s) | 40, 319, 320, 500 |
| Bme18I | GGWCC | 2 cut(s) | 322, 330 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 310, 769 |
| BmeT110I | CYCGRG | 2 cut(s) | 22, 318 |
| BmgBI | CACGTC | 1 cut(s) | 49 |
| BmgT120I | GGNCC | 3 cut(s) | 316, 322, 330 |
| BmiI | GGNNCC | 5 cut(s) | 112, 274, 323, 461, 563 |
| BmrFI | CCNGG | 4 cut(s) | 40, 319, 320, 500 |
| BmtI | GCTAGC | 3 cut(s) | 9, 251, 270 |
| BpiI | GAAGAC | 1 cut(s) | 309 |
| BpuMI | CCSGG | 4 cut(s) | 40, 319, 320, 500 |
| BsaHI | GRCGYC | 1 cut(s) | 543 |
| BsaJI | CCNNGG | 5 cut(s) | 55, 158, 318, 498, 594 |
| BsaWI | WCCGGW | 2 cut(s) | 190, 327 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 61, 159, 231, 282, 506, 517, 557 |
| Bse118I | RCCGGY | 2 cut(s) | 278, 607 |
| Bse3DI | GCAATG | 1 cut(s) | 609 |
| BseAI | TCCGGA | 2 cut(s) | 190, 327 |
| BseDI | CCNNGG | 5 cut(s) | 55, 158, 318, 498, 594 |
| BseGI | GGATG | 2 cut(s) | 220, 590 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 61, 159, 231, 282, 506, 517, 557 |
| BseMI | GCAATG | 1 cut(s) | 609 |
| BseRI | GAGGAG | 6 cut(s) | 254, 707, 752, 796, 799, 825 |
| BseSI | GKGCMC | 1 cut(s) | 462 |
| BseXI | GCAGC | 2 cut(s) | 250, 356 |
| Bsh1236I | CGCG | 1 cut(s) | 516 |
| Bsh1285I | CGRYCG | 1 cut(s) | 127 |
| BshFI | GGCC | 3 cut(s) | 317, 359, 510 |
| BshNI | GGYRCC | 2 cut(s) | 459, 561 |
| BsiEI | CGRYCG | 1 cut(s) | 127 |
| BsiHKCI | CYCGRG | 2 cut(s) | 22, 318 |
| BsiSI | CCGG | 7 cut(s) | 39, 191, 279, 319, 328, 500, 608 |
| BsiWI | CGTACG | 1 cut(s) | 120 |
| BslFI | GGGAC | 1 cut(s) | 37 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 61, 159, 231, 282, 506, 517, 557 |
| BsmAI | GTCTC | 2 cut(s) | 499, 734 |
| BsmBI | CGTCTC | 1 cut(s) | 734 |
| BsmFI | GGGAC | 1 cut(s) | 37 |
| BsnI | GGCC | 3 cut(s) | 317, 359, 510 |
| BsoBI | CYCGRG | 2 cut(s) | 22, 318 |
| Bsp1286I | GDGCHC | 1 cut(s) | 462 |
| Bsp13I | TCCGGA | 2 cut(s) | 190, 327 |
| Bsp143I | GATC | 3 cut(s) | 18, 124, 364 |
| BspANI | GGCC | 3 cut(s) | 317, 359, 510 |
| BspEI | TCCGGA | 2 cut(s) | 190, 327 |
| BspFNI | CGCG | 1 cut(s) | 516 |
| BspLI | GGNNCC | 5 cut(s) | 112, 274, 323, 461, 563 |
| BspOI | GCTAGC | 3 cut(s) | 9, 251, 270 |
| BspT107I | GGYRCC | 2 cut(s) | 459, 561 |
| BsrDI | GCAATG | 1 cut(s) | 609 |
| BsrFI | RCCGGY | 2 cut(s) | 278, 607 |
| BssAI | RCCGGY | 2 cut(s) | 278, 607 |
| BssECI | CCNNGG | 5 cut(s) | 55, 158, 318, 498, 594 |
| BssMI | GATC | 3 cut(s) | 18, 124, 364 |
| BssNI | GRCGYC | 1 cut(s) | 543 |
| BssT1I | CCWWGG | 2 cut(s) | 158, 594 |
| Bst4CI | ACNGT | 4 cut(s) | 120, 339, 384, 436 |
| Bst6I | CTCTTC | 1 cut(s) | 282 |
| BstACI | GRCGYC | 1 cut(s) | 543 |
| BstC8I | GCNNGC | 6 cut(s) | 7, 226, 249, 253, 268, 505 |
| BstF5I | GGATG | 2 cut(s) | 220, 590 |
| BstFNI | CGCG | 1 cut(s) | 516 |
| BstH2I | RGCGCY | 1 cut(s) | 264 |
| BstHHI | GCGC | 1 cut(s) | 263 |
| BstKTI | GATC | 3 cut(s) | 21, 127, 367 |
| BstMAI | GTCTC | 2 cut(s) | 499, 734 |
| BstMBI | GATC | 3 cut(s) | 18, 124, 364 |
| BstMCI | CGRYCG | 1 cut(s) | 127 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 267, 513 |
| BstSCI | CCNGG | 4 cut(s) | 38, 317, 318, 498 |
| BstSLI | GKGCMC | 1 cut(s) | 462 |
| BstUI | CGCG | 1 cut(s) | 516 |
| BstV1I | GCAGC | 2 cut(s) | 250, 356 |
| BstV2I | GAAGAC | 1 cut(s) | 309 |
| BstX2I | RGATCY | 1 cut(s) | 18 |
| BstYI | RGATCY | 1 cut(s) | 18 |
| BsuI | GTATCC | 1 cut(s) | 607 |
| BsuRI | GGCC | 3 cut(s) | 317, 359, 510 |
| BtrI | CACGTC | 1 cut(s) | 49 |
| BtsCI | GGATG | 2 cut(s) | 220, 590 |
| BtsIMutI | CAGTG | 1 cut(s) | 441 |
| Cac8I | GCNNGC | 6 cut(s) | 7, 226, 249, 253, 268, 505 |
| CfoI | GCGC | 1 cut(s) | 263 |
| Cfr10I | RCCGGY | 2 cut(s) | 278, 607 |
| Cfr13I | GGNCC | 3 cut(s) | 316, 322, 330 |
| Cfr9I | CCCGGG | 1 cut(s) | 318 |
| CpoI | CGGWCCG | 1 cut(s) | 330 |
| CseI | GACGC | 2 cut(s) | 80, 551 |
| Csp6I | GTAC | 1 cut(s) | 121 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 591, 626 |
| CspI | CGGWCCG | 1 cut(s) | 330 |
| CviAII | CATG | 5 cut(s) | 104, 236, 676, 721, 766 |
| CviQI | GTAC | 1 cut(s) | 121 |
| DpnI | GATC | 3 cut(s) | 20, 126, 366 |
| DpnII | GATC | 3 cut(s) | 18, 124, 364 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 337 |
| DriI | GACNNNNNGTC | 2 cut(s) | 310, 769 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 337 |
| Eam1104I | CTCTTC | 1 cut(s) | 282 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 310, 769 |
| EarI | CTCTTC | 1 cut(s) | 282 |
| EciI | GGCGGA | 7 cut(s) | 80, 265, 686, 719, 764, 805, 837 |
| Eco130I | CCWWGG | 2 cut(s) | 158, 594 |
| Eco47I | GGWCC | 2 cut(s) | 322, 330 |
| Eco47III | AGCGCT | 1 cut(s) | 262 |
| Eco88I | CYCGRG | 2 cut(s) | 22, 318 |
| EcoO109I | RGGNCCY | 1 cut(s) | 322 |
| EcoT14I | CCWWGG | 2 cut(s) | 158, 594 |
| ErhI | CCWWGG | 2 cut(s) | 158, 594 |
| Esp3I | CGTCTC | 1 cut(s) | 734 |
| FaeI | CATG | 5 cut(s) | 107, 239, 679, 724, 769 |
| FaqI | GGGAC | 1 cut(s) | 37 |
| FatI | CATG | 5 cut(s) | 103, 235, 675, 720, 765 |
| FauI | CCCGC | 7 cut(s) | 100, 233, 290, 345, 385, 496, 634 |
| FblI | GTMKAC | 1 cut(s) | 98 |
| FokI | GGATG | 2 cut(s) | 227, 577 |
| FspBI | CTAG | 6 cut(s) | 6, 131, 183, 201, 248, 267 |
| GlaI | GCGC | 1 cut(s) | 262 |
| HaeII | RGCGCY | 1 cut(s) | 264 |
| HaeIII | GGCC | 3 cut(s) | 317, 359, 510 |
| HapII | CCGG | 7 cut(s) | 39, 191, 279, 319, 328, 500, 608 |
| HgaI | GACGC | 2 cut(s) | 80, 551 |
| HhaI | GCGC | 1 cut(s) | 263 |
| Hin1I | GRCGYC | 1 cut(s) | 543 |
| Hin1II | CATG | 5 cut(s) | 107, 239, 679, 724, 769 |
| Hin6I | GCGC | 1 cut(s) | 261 |
| HinP1I | GCGC | 1 cut(s) | 261 |
| HincII | GTYRAC | 1 cut(s) | 380 |
| HindII | GTYRAC | 1 cut(s) | 380 |
| HinfI | GANTC | 4 cut(s) | 35, 311, 476, 770 |
| HpaII | CCGG | 7 cut(s) | 39, 191, 279, 319, 328, 500, 608 |
| HphI | GGTGA | 2 cut(s) | 108, 724 |
| Hpy166II | GTNNAC | 6 cut(s) | 99, 380, 432, 439, 634, 661 |
| Hpy188I | TCNGA | 2 cut(s) | 481, 775 |
| Hpy188III | TCNNGA | 3 cut(s) | 22, 191, 328 |
| Hpy8I | GTNNAC | 6 cut(s) | 99, 380, 432, 439, 634, 661 |
| Hpy99I | CGWCG | 2 cut(s) | 343, 456 |
| HpyAV | CCTTC | 2 cut(s) | 521, 550 |
| HpyCH4III | ACNGT | 4 cut(s) | 120, 339, 384, 436 |
| HpyCH4IV | ACGT | 2 cut(s) | 48, 306 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 267, 513 |
| HpySE526I | ACGT | 2 cut(s) | 48, 306 |
| Hsp92I | GRCGYC | 1 cut(s) | 543 |
| Hsp92II | CATG | 5 cut(s) | 107, 239, 679, 724, 769 |
| HspAI | GCGC | 1 cut(s) | 261 |
| Kpn2I | TCCGGA | 2 cut(s) | 190, 327 |
| Kzo9I | GATC | 3 cut(s) | 18, 124, 364 |
| LmnI | GCTCC | 1 cut(s) | 278 |
| LpnPI | CCDG | 7 cut(s) | 52, 204, 292, 332, 341, 513, 621 |
| Lsp1109I | GCAGC | 2 cut(s) | 250, 356 |
| MaeI | CTAG | 6 cut(s) | 6, 131, 183, 201, 248, 267 |
| MaeII | ACGT | 2 cut(s) | 48, 306 |
| MaeIII | GTNAC | 1 cut(s) | 712 |
| MalI | GATC | 3 cut(s) | 20, 126, 366 |
| MboI | GATC | 3 cut(s) | 18, 124, 364 |
| MboII | GAAGA | 2 cut(s) | 299, 314 |
| MflI | RGATCY | 1 cut(s) | 18 |
| MhlI | GDGCHC | 1 cut(s) | 462 |
| MluCI | AATT | 1 cut(s) | 575 |
| MlyI | GAGTC | 2 cut(s) | 320, 779 |
| MmeI | TCCRAC | 1 cut(s) | 753 |
| MroI | TCCGGA | 2 cut(s) | 190, 327 |
| MseI | TTAA | 1 cut(s) | 578 |
| MslI | CAYNNNNRTG | 1 cut(s) | 234 |
| MspI | CCGG | 7 cut(s) | 39, 191, 279, 319, 328, 500, 608 |
| MspR9I | CCNGG | 4 cut(s) | 40, 319, 320, 500 |
| MvnI | CGCG | 1 cut(s) | 516 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 267, 513 |
| NciI | CCSGG | 4 cut(s) | 40, 319, 320, 500 |
| NdeII | GATC | 3 cut(s) | 18, 124, 364 |
| NheI | GCTAGC | 3 cut(s) | 5, 247, 266 |
| NlaIII | CATG | 5 cut(s) | 107, 239, 679, 724, 769 |
| NlaIV | GGNNCC | 5 cut(s) | 112, 274, 323, 461, 563 |
| NmeAIII | GCCGAG | 2 cut(s) | 36, 571 |
| NmuCI | GTSAC | 1 cut(s) | 712 |
| PaeR7I | CTCGAG | 1 cut(s) | 22 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 184, 373 |
| PfeI | GAWTC | 2 cut(s) | 35, 476 |
| Pfl23II | CGTACG | 1 cut(s) | 120 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 159 |
| Ple19I | CGATCG | 1 cut(s) | 127 |
| PleI | GAGTC | 2 cut(s) | 319, 778 |
| PpsI | GAGTC | 2 cut(s) | 319, 778 |
| PpuMI | RGGWCCY | 1 cut(s) | 322 |
| Psp5II | RGGWCCY | 1 cut(s) | 322 |
| PspLI | CGTACG | 1 cut(s) | 120 |
| PspN4I | GGNNCC | 5 cut(s) | 112, 274, 323, 461, 563 |
| PspPI | GGNCC | 3 cut(s) | 316, 322, 330 |
| PspPPI | RGGWCCY | 1 cut(s) | 322 |
| PsuI | RGATCY | 1 cut(s) | 18 |
| PvuI | CGATCG | 1 cut(s) | 127 |
| RsaI | GTAC | 1 cut(s) | 122 |
| RsaNI | GTAC | 1 cut(s) | 121 |
| RseI | CAYNNNNRTG | 1 cut(s) | 234 |
| Rsr2I | CGGWCCG | 1 cut(s) | 330 |
| RsrII | CGGWCCG | 1 cut(s) | 330 |
| SaqAI | TTAA | 1 cut(s) | 578 |
| Sau3AI | GATC | 3 cut(s) | 18, 124, 364 |
| Sau96I | GGNCC | 3 cut(s) | 316, 322, 330 |
| SchI | GAGTC | 2 cut(s) | 320, 779 |
| ScrFI | CCNGG | 4 cut(s) | 40, 319, 320, 500 |
| SduI | GDGCHC | 1 cut(s) | 462 |
| Sfr274I | CTCGAG | 1 cut(s) | 22 |
| SgrAI | CRCCGGYG | 1 cut(s) | 278 |
| SinI | GGWCC | 2 cut(s) | 322, 330 |
| SlaI | CTCGAG | 1 cut(s) | 22 |
| SmaI | CCCGGG | 1 cut(s) | 320 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 234 |
| SmlI | CTYRAG | 1 cut(s) | 22 |
| SmoI | CTYRAG | 1 cut(s) | 22 |
| Sse9I | AATT | 1 cut(s) | 575 |
| SspMI | CTAG | 6 cut(s) | 6, 131, 183, 201, 248, 267 |
| StyD4I | CCNGG | 4 cut(s) | 38, 317, 318, 498 |
| StyI | CCWWGG | 2 cut(s) | 158, 594 |
| TaaI | ACNGT | 4 cut(s) | 120, 339, 384, 436 |
| TaiI | ACGT | 2 cut(s) | 51, 309 |
| TaqI | TCGA | 4 cut(s) | 23, 138, 401, 583 |
| TasI | AATT | 1 cut(s) | 575 |
| TfiI | GAWTC | 2 cut(s) | 35, 476 |
| Tru1I | TTAA | 1 cut(s) | 578 |
| Tru9I | TTAA | 1 cut(s) | 578 |
| TscAI | CASTG | 1 cut(s) | 441 |
| TseFI | GTSAC | 1 cut(s) | 712 |
| TseI | GCWGC | 2 cut(s) | 263, 369 |
| Tsp45I | GTSAC | 1 cut(s) | 712 |
| TspDTI | ATGAA | 1 cut(s) | 569 |
| TspGWI | ACGGA | 3 cut(s) | 84, 632, 731 |
| TspMI | CCCGGG | 1 cut(s) | 318 |
| TspRI | CASTG | 1 cut(s) | 441 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 159 |
| VpaK11BI | GGWCC | 2 cut(s) | 322, 330 |
| XhoI | CTCGAG | 1 cut(s) | 22 |
| XmaI | CCCGGG | 1 cut(s) | 318 |
| XmiI | GTMKAC | 1 cut(s) | 98 |
| XspI | CTAG | 6 cut(s) | 6, 131, 183, 201, 248, 267 |