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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 99 |
| AccBSI | CCGCTC | 1 cut(s) | 237 |
| AccII | CGCG | 1 cut(s) | 36 |
| AcoI | YGGCCR | 1 cut(s) | 132 |
| AcuI | CTGAAG | 1 cut(s) | 143 |
| AfaI | GTAC | 1 cut(s) | 241 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 223 |
| AflII | CTTAAG | 1 cut(s) | 68 |
| AgsI | TTSAA | 1 cut(s) | 268 |
| AjnI | CCWGG | 1 cut(s) | 376 |
| AluBI | AGCT | 4 cut(s) | 43, 115, 220, 337 |
| AluI | AGCT | 4 cut(s) | 43, 115, 220, 337 |
| AoxI | GGCC | 4 cut(s) | 9, 132, 246, 312 |
| ApeKI | GCWGC | 3 cut(s) | 212, 320, 323 |
| AspLEI | GCGC | 1 cut(s) | 356 |
| AspS9I | GGNCC | 1 cut(s) | 380 |
| AsuHPI | GGTGA | 1 cut(s) | 319 |
| AvaII | GGWCC | 1 cut(s) | 380 |
| BbvI | GCAGC | 3 cut(s) | 199, 307, 310 |
| BccI | CCATC | 2 cut(s) | 121, 292 |
| BceAI | ACGGC | 1 cut(s) | 387 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 36 |
| BciT130I | CCWGG | 1 cut(s) | 378 |
| BfrI | CTTAAG | 1 cut(s) | 68 |
| BfuAI | ACCTGC | 1 cut(s) | 99 |
| BisI | GCNGC | 8 cut(s) | 132, 174, 213, 249, 252, 279, 321, 324 |
| BlsI | GCNGC | 8 cut(s) | 133, 175, 214, 250, 253, 280, 322, 325 |
| Bme1390I | CCNGG | 1 cut(s) | 378 |
| Bme18I | GGWCC | 1 cut(s) | 380 |
| BmgT120I | GGNCC | 1 cut(s) | 380 |
| BmrFI | CCNGG | 1 cut(s) | 378 |
| BmsI | GCATC | 5 cut(s) | 10, 19, 250, 292, 382 |
| BpmI | CTGGAG | 1 cut(s) | 242 |
| Bpu10I | CCTNAGC | 1 cut(s) | 186 |
| BsaJI | CCNNGG | 2 cut(s) | 24, 135 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 223 |
| Bse118I | RCCGGY | 1 cut(s) | 314 |
| BseBI | CCWGG | 1 cut(s) | 378 |
| BseDI | CCNNGG | 2 cut(s) | 24, 135 |
| BseGI | GGATG | 4 cut(s) | 34, 265, 307, 373 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 223 |
| BseMII | CTCAG | 1 cut(s) | 234 |
| BseRI | GAGGAG | 1 cut(s) | 247 |
| BseXI | GCAGC | 3 cut(s) | 199, 307, 310 |
| BseYI | CCCAGC | 2 cut(s) | 216, 394 |
| Bsh1236I | CGCG | 1 cut(s) | 36 |
| BshFI | GGCC | 4 cut(s) | 11, 134, 248, 314 |
| BsiSI | CCGG | 1 cut(s) | 315 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 223 |
| BsmI | GAATGC | 1 cut(s) | 20 |
| BsnI | GGCC | 4 cut(s) | 11, 134, 248, 314 |
| BspANI | GGCC | 4 cut(s) | 11, 134, 248, 314 |
| BspCNI | CTCAG | 1 cut(s) | 235 |
| BspFNI | CGCG | 1 cut(s) | 36 |
| BspMI | ACCTGC | 1 cut(s) | 99 |
| BspTI | CTTAAG | 1 cut(s) | 68 |
| BsrBI | CCGCTC | 1 cut(s) | 237 |
| BsrFI | RCCGGY | 1 cut(s) | 314 |
| BssAI | RCCGGY | 1 cut(s) | 314 |
| BssECI | CCNNGG | 2 cut(s) | 24, 135 |
| BssT1I | CCWWGG | 2 cut(s) | 24, 135 |
| Bst2UI | CCWGG | 1 cut(s) | 378 |
| Bst6I | CTCTTC | 1 cut(s) | 224 |
| BstAFI | CTTAAG | 1 cut(s) | 68 |
| BstC8I | GCNNGC | 4 cut(s) | 34, 291, 387, 400 |
| BstDEI | CTNAG | 3 cut(s) | 6, 186, 243 |
| BstF5I | GGATG | 4 cut(s) | 34, 265, 307, 373 |
| BstFNI | CGCG | 1 cut(s) | 36 |
| BstHHI | GCGC | 1 cut(s) | 356 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 29, 121, 182, 260, 311, 320, 395 |
| BstNI | CCWGG | 1 cut(s) | 378 |
| BstSCI | CCNGG | 1 cut(s) | 376 |
| BstUI | CGCG | 1 cut(s) | 36 |
| BstV1I | GCAGC | 3 cut(s) | 199, 307, 310 |
| BsuRI | GGCC | 4 cut(s) | 11, 134, 248, 314 |
| BtgZI | GCGATG | 1 cut(s) | 33 |
| BtsCI | GGATG | 4 cut(s) | 34, 265, 307, 373 |
| BveI | ACCTGC | 1 cut(s) | 99 |
| Cac8I | GCNNGC | 4 cut(s) | 34, 291, 387, 400 |
| CfoI | GCGC | 1 cut(s) | 356 |
| Cfr10I | RCCGGY | 1 cut(s) | 314 |
| Cfr13I | GGNCC | 1 cut(s) | 380 |
| Csp6I | GTAC | 1 cut(s) | 240 |
| CviQI | GTAC | 1 cut(s) | 240 |
| DdeI | CTNAG | 3 cut(s) | 6, 186, 243 |
| EaeI | YGGCCR | 1 cut(s) | 132 |
| Eam1104I | CTCTTC | 1 cut(s) | 224 |
| EarI | CTCTTC | 1 cut(s) | 224 |
| EciI | GGCGGA | 1 cut(s) | 372 |
| Eco130I | CCWWGG | 2 cut(s) | 24, 135 |
| Eco47I | GGWCC | 1 cut(s) | 380 |
| Eco57I | CTGAAG | 1 cut(s) | 143 |
| EcoRII | CCWGG | 1 cut(s) | 376 |
| EcoT14I | CCWWGG | 2 cut(s) | 24, 135 |
| ErhI | CCWWGG | 2 cut(s) | 24, 135 |
| FaiI | YATR | 3 cut(s) | 107, 285, 332 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 278, 310 |
| Fnu4HI | GCNGC | 8 cut(s) | 132, 174, 213, 249, 252, 279, 321, 324 |
| FokI | GGATG | 4 cut(s) | 41, 272, 314, 360 |
| Fsp4HI | GCNGC | 8 cut(s) | 132, 174, 213, 249, 252, 279, 321, 324 |
| GlaI | GCGC | 1 cut(s) | 355 |
| GluI | GCNGC | 8 cut(s) | 132, 174, 213, 249, 252, 279, 321, 324 |
| GsaI | CCCAGC | 2 cut(s) | 220, 398 |
| GsuI | CTGGAG | 1 cut(s) | 242 |
| HaeIII | GGCC | 4 cut(s) | 11, 134, 248, 314 |
| HapII | CCGG | 1 cut(s) | 315 |
| HhaI | GCGC | 1 cut(s) | 356 |
| Hin6I | GCGC | 1 cut(s) | 354 |
| HinP1I | GCGC | 1 cut(s) | 354 |
| HpaII | CCGG | 1 cut(s) | 315 |
| HphI | GGTGA | 1 cut(s) | 319 |
| Hpy188I | TCNGA | 1 cut(s) | 162 |
| Hpy188III | TCNNGA | 1 cut(s) | 142 |
| HpyAV | CCTTC | 3 cut(s) | 274, 304, 363 |
| HpyCH4V | TGCA | 1 cut(s) | 100 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 29, 121, 182, 260, 311, 320, 395 |
| HpyF3I | CTNAG | 3 cut(s) | 6, 186, 243 |
| HspAI | GCGC | 1 cut(s) | 354 |
| LmnI | GCTCC | 1 cut(s) | 234 |
| LpnPI | CCDG | 8 cut(s) | 86, 104, 206, 230, 328, 363, 390, 399 |
| Lsp1109I | GCAGC | 3 cut(s) | 199, 307, 310 |
| LweI | GCATC | 5 cut(s) | 10, 19, 250, 292, 382 |
| MbiI | CCGCTC | 1 cut(s) | 237 |
| MboII | GAAGA | 2 cut(s) | 149, 241 |
| MnlI | CCTC | 5 cut(s) | 138, 196, 217, 225, 238 |
| MseI | TTAA | 1 cut(s) | 69 |
| MspA1I | CMGCKG | 3 cut(s) | 115, 220, 254 |
| MspCI | CTTAAG | 1 cut(s) | 68 |
| MspI | CCGG | 1 cut(s) | 315 |
| MspR9I | CCNGG | 1 cut(s) | 378 |
| Mva1269I | GAATGC | 1 cut(s) | 20 |
| MvaI | CCWGG | 1 cut(s) | 378 |
| MvnI | CGCG | 1 cut(s) | 36 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 29, 121, 182, 260, 311, 320, 395 |
| PctI | GAATGC | 1 cut(s) | 20 |
| PkrI | GCNGC | 8 cut(s) | 133, 175, 214, 250, 253, 280, 322, 325 |
| Psp6I | CCWGG | 1 cut(s) | 376 |
| PspFI | CCCAGC | 2 cut(s) | 216, 394 |
| PspGI | CCWGG | 1 cut(s) | 376 |
| PspPI | GGNCC | 1 cut(s) | 380 |
| PvuII | CAGCTG | 2 cut(s) | 115, 220 |
| RsaI | GTAC | 1 cut(s) | 241 |
| RsaNI | GTAC | 1 cut(s) | 240 |
| SaqAI | TTAA | 1 cut(s) | 69 |
| SatI | GCNGC | 8 cut(s) | 132, 174, 213, 249, 252, 279, 321, 324 |
| Sau96I | GGNCC | 1 cut(s) | 380 |
| ScrFI | CCNGG | 1 cut(s) | 378 |
| SetI | ASST | 9 cut(s) | 45, 69, 93, 117, 141, 192, 222, 339, 382 |
| SfaNI | GCATC | 5 cut(s) | 10, 19, 250, 292, 382 |
| SinI | GGWCC | 1 cut(s) | 380 |
| SmlI | CTYRAG | 1 cut(s) | 68 |
| SmoI | CTYRAG | 1 cut(s) | 68 |
| StyD4I | CCNGG | 1 cut(s) | 376 |
| StyI | CCWWGG | 2 cut(s) | 24, 135 |
| TaqI | TCGA | 1 cut(s) | 367 |
| TauI | GCSGC | 5 cut(s) | 134, 176, 251, 254, 281 |
| Tru1I | TTAA | 1 cut(s) | 69 |
| Tru9I | TTAA | 1 cut(s) | 69 |
| TseI | GCWGC | 3 cut(s) | 212, 320, 323 |
| TspDTI | ATGAA | 1 cut(s) | 359 |
| Vha464I | CTTAAG | 1 cut(s) | 68 |
| VpaK11BI | GGWCC | 1 cut(s) | 380 |