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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 206, 346 |
| AccII | CGCG | 2 cut(s) | 39, 66 |
| AciI | CCGC | 6 cut(s) | 37, 149, 312, 334, 362, 374 |
| AclWI | GGATC | 2 cut(s) | 69, 128 |
| AcyI | GRCGYC | 1 cut(s) | 207 |
| AfaI | GTAC | 2 cut(s) | 98, 309 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 239, 375 |
| AgsI | TTSAA | 1 cut(s) | 230 |
| AjnI | CCWGG | 3 cut(s) | 19, 84, 136 |
| AluBI | AGCT | 1 cut(s) | 385 |
| AluI | AGCT | 1 cut(s) | 385 |
| Alw26I | GTCTC | 1 cut(s) | 83 |
| AlwI | GGATC | 2 cut(s) | 69, 128 |
| AoxI | GGCC | 2 cut(s) | 30, 114 |
| ApeKI | GCWGC | 2 cut(s) | 281, 292 |
| AspLEI | GCGC | 3 cut(s) | 68, 209, 245 |
| AspS9I | GGNCC | 2 cut(s) | 115, 327 |
| AsuHPI | GGTGA | 2 cut(s) | 6, 163 |
| AvaII | GGWCC | 1 cut(s) | 327 |
| BaeGI | GKGCMC | 1 cut(s) | 351 |
| BanI | GGYRCC | 2 cut(s) | 206, 346 |
| BanII | GRGCYC | 1 cut(s) | 158 |
| BbvI | GCAGC | 2 cut(s) | 268, 304 |
| BccI | CCATC | 3 cut(s) | 166, 206, 323 |
| BciT130I | CCWGG | 3 cut(s) | 21, 86, 138 |
| BclI | TGATCA | 1 cut(s) | 247 |
| BcoDI | GTCTC | 1 cut(s) | 83 |
| BfaI | CTAG | 2 cut(s) | 146, 380 |
| BfmI | CTRYAG | 1 cut(s) | 386 |
| BfoI | RGCGCY | 2 cut(s) | 210, 246 |
| BisI | GCNGC | 3 cut(s) | 37, 282, 293 |
| BlsI | GCNGC | 3 cut(s) | 38, 283, 294 |
| Bme1390I | CCNGG | 3 cut(s) | 21, 86, 138 |
| Bme18I | GGWCC | 1 cut(s) | 327 |
| BmgT120I | GGNCC | 2 cut(s) | 115, 327 |
| BmiI | GGNNCC | 4 cut(s) | 208, 328, 329, 348 |
| BmrFI | CCNGG | 3 cut(s) | 21, 86, 138 |
| BmrI | ACTGGG | 1 cut(s) | 114 |
| BmsI | GCATC | 1 cut(s) | 174 |
| BmuI | ACTGGG | 1 cut(s) | 114 |
| BoxI | GACNNNNGTC | 1 cut(s) | 325 |
| BpmI | CTGGAG | 2 cut(s) | 107, 131 |
| BsaHI | GRCGYC | 1 cut(s) | 207 |
| BsaI | GGTCTC | 1 cut(s) | 83 |
| BsaJI | CCNNGG | 3 cut(s) | 137, 222, 233 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 80, 110 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 239, 375 |
| Bse118I | RCCGGY | 1 cut(s) | 169 |
| Bse1I | ACTGG | 2 cut(s) | 109, 244 |
| Bse3DI | GCAATG | 2 cut(s) | 176, 369 |
| BseBI | CCWGG | 3 cut(s) | 21, 86, 138 |
| BseDI | CCNNGG | 3 cut(s) | 137, 222, 233 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 239, 375 |
| BseMI | GCAATG | 2 cut(s) | 176, 369 |
| BseNI | ACTGG | 2 cut(s) | 109, 244 |
| BseRI | GAGGAG | 1 cut(s) | 56 |
| BseSI | GKGCMC | 1 cut(s) | 351 |
| BseXI | GCAGC | 2 cut(s) | 268, 304 |
| BseYI | CCCAGC | 1 cut(s) | 330 |
| BsgI | GTGCAG | 2 cut(s) | 267, 311 |
| Bsh1236I | CGCG | 2 cut(s) | 39, 66 |
| BshFI | GGCC | 2 cut(s) | 32, 116 |
| BshNI | GGYRCC | 2 cut(s) | 206, 346 |
| BsiSI | CCGG | 1 cut(s) | 170 |
| BslFI | GGGAC | 3 cut(s) | 154, 260, 313 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 239, 375 |
| BsmAI | GTCTC | 1 cut(s) | 83 |
| BsmFI | GGGAC | 3 cut(s) | 154, 260, 313 |
| BsnI | GGCC | 2 cut(s) | 32, 116 |
| Bso31I | GGTCTC | 1 cut(s) | 83 |
| Bsp1286I | GDGCHC | 2 cut(s) | 158, 351 |
| Bsp143I | GATC | 3 cut(s) | 61, 133, 247 |
| BspACI | CCGC | 6 cut(s) | 37, 149, 312, 334, 362, 374 |
| BspANI | GGCC | 2 cut(s) | 32, 116 |
| BspFNI | CGCG | 2 cut(s) | 39, 66 |
| BspLI | GGNNCC | 4 cut(s) | 208, 328, 329, 348 |
| BspPI | GGATC | 2 cut(s) | 69, 128 |
| BspT107I | GGYRCC | 2 cut(s) | 206, 346 |
| BspTNI | GGTCTC | 1 cut(s) | 83 |
| BsrDI | GCAATG | 2 cut(s) | 176, 369 |
| BsrFI | RCCGGY | 1 cut(s) | 169 |
| BsrI | ACTGG | 2 cut(s) | 109, 244 |
| BssAI | RCCGGY | 1 cut(s) | 169 |
| BssECI | CCNNGG | 3 cut(s) | 137, 222, 233 |
| BssMI | GATC | 3 cut(s) | 61, 133, 247 |
| BssNI | GRCGYC | 1 cut(s) | 207 |
| Bst2UI | CCWGG | 3 cut(s) | 21, 86, 138 |
| Bst4CI | ACNGT | 1 cut(s) | 130 |
| BstACI | GRCGYC | 1 cut(s) | 207 |
| BstC8I | GCNNGC | 1 cut(s) | 34 |
| BstDSI | CCRYGG | 1 cut(s) | 222 |
| BstEII | GGTNACC | 1 cut(s) | 364 |
| BstFNI | CGCG | 2 cut(s) | 39, 66 |
| BstH2I | RGCGCY | 2 cut(s) | 210, 246 |
| BstHHI | GCGC | 3 cut(s) | 68, 209, 245 |
| BstKTI | GATC | 3 cut(s) | 64, 136, 250 |
| BstMAI | GTCTC | 1 cut(s) | 83 |
| BstMBI | GATC | 3 cut(s) | 61, 133, 247 |
| BstNI | CCWGG | 3 cut(s) | 21, 86, 138 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 325 |
| BstPI | GGTNACC | 1 cut(s) | 364 |
| BstSCI | CCNGG | 3 cut(s) | 19, 84, 136 |
| BstSFI | CTRYAG | 1 cut(s) | 386 |
| BstSLI | GKGCMC | 1 cut(s) | 351 |
| BstUI | CGCG | 2 cut(s) | 39, 66 |
| BstV1I | GCAGC | 2 cut(s) | 268, 304 |
| BsuRI | GGCC | 2 cut(s) | 32, 116 |
| BtgI | CCRYGG | 1 cut(s) | 222 |
| Cac8I | GCNNGC | 1 cut(s) | 34 |
| CfoI | GCGC | 3 cut(s) | 68, 209, 245 |
| Cfr10I | RCCGGY | 1 cut(s) | 169 |
| Cfr13I | GGNCC | 2 cut(s) | 115, 327 |
| Csp6I | GTAC | 2 cut(s) | 97, 308 |
| CviAII | CATG | 2 cut(s) | 94, 323 |
| CviJI | RGCY | 8 cut(s) | 32, 36, 56, 109, 116, 156, 379, 385 |
| CviKI_1 | RGCY | 8 cut(s) | 32, 36, 56, 109, 116, 156, 379, 385 |
| CviQI | GTAC | 2 cut(s) | 97, 308 |
| DinI | GGCGCC | 1 cut(s) | 208 |
| DpnI | GATC | 3 cut(s) | 63, 135, 249 |
| DpnII | GATC | 3 cut(s) | 61, 133, 247 |
| Eco24I | GRGCYC | 1 cut(s) | 158 |
| Eco31I | GGTCTC | 1 cut(s) | 83 |
| Eco47I | GGWCC | 1 cut(s) | 327 |
| Eco91I | GGTNACC | 1 cut(s) | 364 |
| EcoO109I | RGGNCCY | 1 cut(s) | 327 |
| EcoO65I | GGTNACC | 1 cut(s) | 364 |
| EcoRII | CCWGG | 3 cut(s) | 19, 84, 136 |
| EcoT38I | GRGCYC | 1 cut(s) | 158 |
| EgeI | GGCGCC | 1 cut(s) | 208 |
| EheI | GGCGCC | 1 cut(s) | 208 |
| FaeI | CATG | 2 cut(s) | 97, 326 |
| FaiI | YATR | 3 cut(s) | 59, 95, 324 |
| FaqI | GGGAC | 3 cut(s) | 154, 260, 313 |
| FatI | CATG | 2 cut(s) | 93, 322 |
| FauI | CCCGC | 3 cut(s) | 319, 327, 367 |
| FbaI | TGATCA | 1 cut(s) | 247 |
| Fnu4HI | GCNGC | 3 cut(s) | 37, 282, 293 |
| FriOI | GRGCYC | 1 cut(s) | 158 |
| Fsp4HI | GCNGC | 3 cut(s) | 37, 282, 293 |
| FspBI | CTAG | 2 cut(s) | 146, 380 |
| GlaI | GCGC | 3 cut(s) | 67, 208, 244 |
| GluI | GCNGC | 3 cut(s) | 37, 282, 293 |
| GsaI | CCCAGC | 1 cut(s) | 334 |
| GsuI | CTGGAG | 2 cut(s) | 107, 131 |
| HaeII | RGCGCY | 2 cut(s) | 210, 246 |
| HaeIII | GGCC | 2 cut(s) | 32, 116 |
| HapII | CCGG | 1 cut(s) | 170 |
| HhaI | GCGC | 3 cut(s) | 68, 209, 245 |
| Hin1I | GRCGYC | 1 cut(s) | 207 |
| Hin1II | CATG | 2 cut(s) | 97, 326 |
| Hin6I | GCGC | 3 cut(s) | 66, 207, 243 |
| HinP1I | GCGC | 3 cut(s) | 66, 207, 243 |
| HinfI | GANTC | 2 cut(s) | 11, 273 |
| HpaII | CCGG | 1 cut(s) | 170 |
| HphI | GGTGA | 2 cut(s) | 6, 163 |
| Hpy188I | TCNGA | 2 cut(s) | 163, 320 |
| HpyAV | CCTTC | 3 cut(s) | 46, 292, 334 |
| HpyCH4III | ACNGT | 1 cut(s) | 130 |
| HpyCH4V | TGCA | 3 cut(s) | 8, 284, 292 |
| Hsp92I | GRCGYC | 1 cut(s) | 207 |
| Hsp92II | CATG | 2 cut(s) | 97, 326 |
| HspAI | GCGC | 3 cut(s) | 66, 207, 243 |
| KasI | GGCGCC | 1 cut(s) | 206 |
| KflI | GGGWCCC | 1 cut(s) | 327 |
| Ksp22I | TGATCA | 1 cut(s) | 247 |
| Kzo9I | GATC | 3 cut(s) | 61, 133, 247 |
| Lsp1109I | GCAGC | 2 cut(s) | 268, 304 |
| LweI | GCATC | 1 cut(s) | 174 |
| MaeI | CTAG | 2 cut(s) | 146, 380 |
| MaeIII | GTNAC | 1 cut(s) | 364 |
| MalI | GATC | 3 cut(s) | 63, 135, 249 |
| MboI | GATC | 3 cut(s) | 61, 133, 247 |
| MhlI | GDGCHC | 2 cut(s) | 158, 351 |
| MluCI | AATT | 1 cut(s) | 79 |
| Mly113I | GGCGCC | 1 cut(s) | 207 |
| MlyI | GAGTC | 1 cut(s) | 282 |
| MnlI | CCTC | 6 cut(s) | 27, 34, 106, 228, 352, 361 |
| MseI | TTAA | 1 cut(s) | 75 |
| MspA1I | CMGCKG | 1 cut(s) | 334 |
| MspI | CCGG | 1 cut(s) | 170 |
| MspR9I | CCNGG | 3 cut(s) | 21, 86, 138 |
| MvaI | CCWGG | 3 cut(s) | 21, 86, 138 |
| MvnI | CGCG | 2 cut(s) | 39, 66 |
| NarI | GGCGCC | 1 cut(s) | 207 |
| NdeII | GATC | 3 cut(s) | 61, 133, 247 |
| NlaIII | CATG | 2 cut(s) | 97, 326 |
| NlaIV | GGNNCC | 4 cut(s) | 208, 328, 329, 348 |
| PfeI | GAWTC | 1 cut(s) | 11 |
| PfoI | TCCNGGA | 2 cut(s) | 19, 84 |
| PkrI | GCNGC | 3 cut(s) | 38, 283, 294 |
| PleI | GAGTC | 1 cut(s) | 281 |
| PluTI | GGCGCC | 1 cut(s) | 210 |
| PpsI | GAGTC | 1 cut(s) | 281 |
| PpuMI | RGGWCCY | 1 cut(s) | 327 |
| PshAI | GACNNNNGTC | 1 cut(s) | 325 |
| Psp5II | RGGWCCY | 1 cut(s) | 327 |
| Psp6I | CCWGG | 3 cut(s) | 19, 84, 136 |
| PspEI | GGTNACC | 1 cut(s) | 364 |
| PspFI | CCCAGC | 1 cut(s) | 330 |
| PspGI | CCWGG | 3 cut(s) | 19, 84, 136 |
| PspN4I | GGNNCC | 4 cut(s) | 208, 328, 329, 348 |
| PspPI | GGNCC | 2 cut(s) | 115, 327 |
| PspPPI | RGGWCCY | 1 cut(s) | 327 |
| RsaI | GTAC | 2 cut(s) | 98, 309 |
| RsaNI | GTAC | 2 cut(s) | 97, 308 |
| SaqAI | TTAA | 1 cut(s) | 75 |
| SatI | GCNGC | 3 cut(s) | 37, 282, 293 |
| Sau3AI | GATC | 3 cut(s) | 61, 133, 247 |
| Sau96I | GGNCC | 2 cut(s) | 115, 327 |
| SchI | GAGTC | 1 cut(s) | 282 |
| ScrFI | CCNGG | 3 cut(s) | 21, 86, 138 |
| SduI | GDGCHC | 2 cut(s) | 158, 351 |
| SetI | ASST | 4 cut(s) | 19, 289, 345, 387 |
| SfaNI | GCATC | 1 cut(s) | 174 |
| SfcI | CTRYAG | 1 cut(s) | 386 |
| SfoI | GGCGCC | 1 cut(s) | 208 |
| SinI | GGWCC | 1 cut(s) | 327 |
| Sse9I | AATT | 1 cut(s) | 79 |
| SsiI | CCGC | 6 cut(s) | 37, 149, 312, 334, 362, 374 |
| SspDI | GGCGCC | 1 cut(s) | 206 |
| SspMI | CTAG | 2 cut(s) | 146, 380 |
| StyD4I | CCNGG | 3 cut(s) | 19, 84, 136 |
| TaaI | ACNGT | 1 cut(s) | 130 |
| TasI | AATT | 1 cut(s) | 79 |
| TauI | GCSGC | 1 cut(s) | 39 |
| TfiI | GAWTC | 1 cut(s) | 11 |
| Tru1I | TTAA | 1 cut(s) | 75 |
| Tru9I | TTAA | 1 cut(s) | 75 |
| TseI | GCWGC | 2 cut(s) | 281, 292 |
| VpaK11BI | GGWCC | 1 cut(s) | 327 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 200 |
| XspI | CTAG | 2 cut(s) | 146, 380 |