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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 294 |
| AccBSI | CCGCTC | 3 cut(s) | 43, 256, 385 |
| AccII | CGCG | 3 cut(s) | 76, 297, 371 |
| AclWI | GGATC | 1 cut(s) | 333 |
| AcoI | YGGCCR | 2 cut(s) | 264, 312 |
| AcuI | CTGAAG | 1 cut(s) | 88 |
| AcyI | GRCGYC | 2 cut(s) | 158, 291 |
| AfaI | GTAC | 1 cut(s) | 499 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 178, 237, 321 |
| AflIII | ACRYGT | 1 cut(s) | 343 |
| AgsI | TTSAA | 1 cut(s) | 521 |
| AjiI | CACGTC | 1 cut(s) | 346 |
| AleI | CACNNNNGTG | 1 cut(s) | 36 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 37 |
| AluBI | AGCT | 4 cut(s) | 108, 187, 304, 355 |
| AluI | AGCT | 4 cut(s) | 108, 187, 304, 355 |
| Alw21I | GWGCWC | 1 cut(s) | 189 |
| Alw26I | GTCTC | 3 cut(s) | 212, 352, 443 |
| AlwI | GGATC | 1 cut(s) | 333 |
| AoxI | GGCC | 3 cut(s) | 228, 264, 312 |
| ApeKI | GCWGC | 5 cut(s) | 166, 373, 376, 421, 512 |
| AspLEI | GCGC | 2 cut(s) | 78, 373 |
| AsuC2I | CCSGG | 1 cut(s) | 172 |
| AsuHPI | GGTGA | 1 cut(s) | 479 |
| BalI | TGGCCA | 2 cut(s) | 266, 314 |
| BanII | GRGCYC | 1 cut(s) | 189 |
| Bbv12I | GWGCWC | 1 cut(s) | 189 |
| BbvI | GCAGC | 5 cut(s) | 178, 360, 363, 433, 499 |
| BccI | CCATC | 1 cut(s) | 323 |
| BceAI | ACGGC | 1 cut(s) | 99 |
| BcnI | CCSGG | 1 cut(s) | 172 |
| BcoDI | GTCTC | 3 cut(s) | 212, 352, 443 |
| Bme1390I | CCNGG | 1 cut(s) | 172 |
| BmgBI | CACGTC | 1 cut(s) | 346 |
| BmrFI | CCNGG | 1 cut(s) | 172 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 9, 41 |
| BpmI | CTGGAG | 3 cut(s) | 194, 350, 377 |
| Bpu10I | CCTNAGC | 1 cut(s) | 188 |
| BpuMI | CCSGG | 1 cut(s) | 172 |
| BsaHI | GRCGYC | 2 cut(s) | 158, 291 |
| BsaI | GGTCTC | 1 cut(s) | 212 |
| BsaJI | CCNNGG | 4 cut(s) | 170, 231, 267, 295 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 5, 35 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 178, 237, 321 |
| Bse1I | ACTGG | 1 cut(s) | 447 |
| BseDI | CCNNGG | 4 cut(s) | 170, 231, 267, 295 |
| BseGI | GGATG | 2 cut(s) | 315, 451 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 178, 237, 321 |
| BseMII | CTCAG | 1 cut(s) | 202 |
| BseNI | ACTGG | 1 cut(s) | 447 |
| BseXI | GCAGC | 5 cut(s) | 178, 360, 363, 433, 499 |
| BseYI | CCCAGC | 2 cut(s) | 46, 460 |
| BsgI | GTGCAG | 1 cut(s) | 440 |
| Bsh1236I | CGCG | 3 cut(s) | 76, 297, 371 |
| Bsh1285I | CGRYCG | 1 cut(s) | 510 |
| BshFI | GGCC | 3 cut(s) | 230, 266, 314 |
| BsiEI | CGRYCG | 1 cut(s) | 510 |
| BsiHKAI | GWGCWC | 1 cut(s) | 189 |
| BsiSI | CCGG | 2 cut(s) | 172, 319 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 178, 237, 321 |
| BsmAI | GTCTC | 3 cut(s) | 212, 352, 443 |
| BsmBI | CGTCTC | 2 cut(s) | 352, 443 |
| BsnI | GGCC | 3 cut(s) | 230, 266, 314 |
| Bso31I | GGTCTC | 1 cut(s) | 212 |
| Bsp1286I | GDGCHC | 1 cut(s) | 189 |
| Bsp143I | GATC | 2 cut(s) | 325, 366 |
| BspANI | GGCC | 3 cut(s) | 230, 266, 314 |
| BspCNI | CTCAG | 1 cut(s) | 201 |
| BspFNI | CGCG | 3 cut(s) | 76, 297, 371 |
| BspPI | GGATC | 1 cut(s) | 333 |
| BspQI | GCTCTTC | 1 cut(s) | 177 |
| BspTNI | GGTCTC | 1 cut(s) | 212 |
| BsrBI | CCGCTC | 3 cut(s) | 43, 256, 385 |
| BsrI | ACTGG | 1 cut(s) | 447 |
| BssECI | CCNNGG | 4 cut(s) | 170, 231, 267, 295 |
| BssMI | GATC | 2 cut(s) | 325, 366 |
| BssNI | GRCGYC | 2 cut(s) | 158, 291 |
| BssT1I | CCWWGG | 2 cut(s) | 231, 267 |
| Bst6I | CTCTTC | 2 cut(s) | 32, 177 |
| BstACI | GRCGYC | 2 cut(s) | 158, 291 |
| BstC8I | GCNNGC | 5 cut(s) | 67, 243, 264, 302, 482 |
| BstDEI | CTNAG | 1 cut(s) | 188 |
| BstDSI | CCRYGG | 1 cut(s) | 295 |
| BstF5I | GGATG | 2 cut(s) | 315, 451 |
| BstFNI | CGCG | 3 cut(s) | 76, 297, 371 |
| BstHHI | GCGC | 2 cut(s) | 78, 373 |
| BstKTI | GATC | 2 cut(s) | 328, 369 |
| BstMAI | GTCTC | 3 cut(s) | 212, 352, 443 |
| BstMBI | GATC | 2 cut(s) | 325, 366 |
| BstMCI | CGRYCG | 1 cut(s) | 510 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 75, 382, 512, 521 |
| BstSCI | CCNGG | 1 cut(s) | 170 |
| BstUI | CGCG | 3 cut(s) | 76, 297, 371 |
| BstV1I | GCAGC | 5 cut(s) | 178, 360, 363, 433, 499 |
| BstX2I | RGATCY | 1 cut(s) | 325 |
| BstYI | RGATCY | 1 cut(s) | 325 |
| BsuRI | GGCC | 3 cut(s) | 230, 266, 314 |
| BtgI | CCRYGG | 1 cut(s) | 295 |
| BtrI | CACGTC | 1 cut(s) | 346 |
| BtsCI | GGATG | 2 cut(s) | 315, 451 |
| Cac8I | GCNNGC | 5 cut(s) | 67, 243, 264, 302, 482 |
| CfoI | GCGC | 2 cut(s) | 78, 373 |
| Cfr42I | CCGCGG | 1 cut(s) | 298 |
| CseI | GACGC | 1 cut(s) | 147 |
| Csp6I | GTAC | 1 cut(s) | 498 |
| CviQI | GTAC | 1 cut(s) | 498 |
| DdeI | CTNAG | 1 cut(s) | 188 |
| DpnI | GATC | 2 cut(s) | 327, 368 |
| DpnII | GATC | 2 cut(s) | 325, 366 |
| EaeI | YGGCCR | 2 cut(s) | 264, 312 |
| Eam1104I | CTCTTC | 2 cut(s) | 32, 177 |
| EarI | CTCTTC | 2 cut(s) | 32, 177 |
| EciI | GGCGGA | 3 cut(s) | 239, 260, 287 |
| Ecl136II | GAGCTC | 1 cut(s) | 187 |
| Eco130I | CCWWGG | 2 cut(s) | 231, 267 |
| Eco24I | GRGCYC | 1 cut(s) | 189 |
| Eco31I | GGTCTC | 1 cut(s) | 212 |
| Eco53kI | GAGCTC | 1 cut(s) | 187 |
| Eco57I | CTGAAG | 1 cut(s) | 88 |
| EcoICRI | GAGCTC | 1 cut(s) | 187 |
| EcoT14I | CCWWGG | 2 cut(s) | 231, 267 |
| EcoT38I | GRGCYC | 1 cut(s) | 189 |
| ErhI | CCWWGG | 2 cut(s) | 231, 267 |
| Esp3I | CGTCTC | 2 cut(s) | 352, 443 |
| FaiI | YATR | 3 cut(s) | 71, 146, 285 |
| FauI | CCCGC | 5 cut(s) | 58, 124, 249, 315, 417 |
| FokI | GGATG | 2 cut(s) | 302, 458 |
| FriOI | GRGCYC | 1 cut(s) | 189 |
| GlaI | GCGC | 2 cut(s) | 77, 372 |
| GsaI | CCCAGC | 2 cut(s) | 50, 464 |
| GsuI | CTGGAG | 3 cut(s) | 194, 350, 377 |
| HaeIII | GGCC | 3 cut(s) | 230, 266, 314 |
| HapII | CCGG | 2 cut(s) | 172, 319 |
| HgaI | GACGC | 1 cut(s) | 147 |
| HhaI | GCGC | 2 cut(s) | 78, 373 |
| Hin1I | GRCGYC | 2 cut(s) | 158, 291 |
| Hin6I | GCGC | 2 cut(s) | 76, 371 |
| HinP1I | GCGC | 2 cut(s) | 76, 371 |
| HinfI | GANTC | 1 cut(s) | 428 |
| HpaII | CCGG | 2 cut(s) | 172, 319 |
| HphI | GGTGA | 1 cut(s) | 479 |
| Hpy188I | TCNGA | 1 cut(s) | 530 |
| Hpy188III | TCNNGA | 2 cut(s) | 211, 329 |
| HpyAV | CCTTC | 1 cut(s) | 112 |
| HpyCH4IV | ACGT | 2 cut(s) | 291, 345 |
| HpyCH4V | TGCA | 4 cut(s) | 287, 379, 421, 484 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 75, 382, 512, 521 |
| HpyF3I | CTNAG | 1 cut(s) | 188 |
| HpySE526I | ACGT | 2 cut(s) | 291, 345 |
| Hsp92I | GRCGYC | 2 cut(s) | 158, 291 |
| HspAI | GCGC | 2 cut(s) | 76, 371 |
| KspI | CCGCGG | 1 cut(s) | 298 |
| Kzo9I | GATC | 2 cut(s) | 325, 366 |
| LguI | GCTCTTC | 1 cut(s) | 177 |
| LmnI | GCTCC | 2 cut(s) | 13, 358 |
| Lsp1109I | GCAGC | 5 cut(s) | 178, 360, 363, 433, 499 |
| MaeII | ACGT | 2 cut(s) | 291, 345 |
| MaeIII | GTNAC | 2 cut(s) | 135, 278 |
| MalI | GATC | 2 cut(s) | 327, 368 |
| MbiI | CCGCTC | 3 cut(s) | 43, 256, 385 |
| MboI | GATC | 2 cut(s) | 325, 366 |
| MboII | GAAGA | 2 cut(s) | 19, 194 |
| MfeI | CAATTG | 1 cut(s) | 87 |
| MflI | RGATCY | 1 cut(s) | 325 |
| MhlI | GDGCHC | 1 cut(s) | 189 |
| MlsI | TGGCCA | 2 cut(s) | 266, 314 |
| MluCI | AATT | 2 cut(s) | 87, 198 |
| MluNI | TGGCCA | 2 cut(s) | 266, 314 |
| MlyI | GAGTC | 1 cut(s) | 437 |
| MnlI | CCTC | 9 cut(s) | 35, 172, 197, 207, 220, 231, 241, 327, 511 |
| Mox20I | TGGCCA | 2 cut(s) | 266, 314 |
| MscI | TGGCCA | 2 cut(s) | 266, 314 |
| MslI | CAYNNNNRTG | 2 cut(s) | 36, 416 |
| Msp20I | TGGCCA | 2 cut(s) | 266, 314 |
| MspA1I | CMGCKG | 2 cut(s) | 297, 424 |
| MspI | CCGG | 2 cut(s) | 172, 319 |
| MspR9I | CCNGG | 1 cut(s) | 172 |
| MunI | CAATTG | 1 cut(s) | 87 |
| MvnI | CGCG | 3 cut(s) | 76, 297, 371 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 75, 382, 512, 521 |
| NciI | CCSGG | 1 cut(s) | 172 |
| NdeII | GATC | 2 cut(s) | 325, 366 |
| NmuCI | GTSAC | 1 cut(s) | 278 |
| OliI | CACNNNNGTG | 1 cut(s) | 36 |
| PciSI | GCTCTTC | 1 cut(s) | 177 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 147 |
| PleI | GAGTC | 1 cut(s) | 436 |
| PpsI | GAGTC | 1 cut(s) | 436 |
| Psp124BI | GAGCTC | 1 cut(s) | 189 |
| PspFI | CCCAGC | 2 cut(s) | 46, 460 |
| PsuI | RGATCY | 1 cut(s) | 325 |
| RsaI | GTAC | 1 cut(s) | 499 |
| RsaNI | GTAC | 1 cut(s) | 498 |
| RseI | CAYNNNNRTG | 2 cut(s) | 36, 416 |
| SacI | GAGCTC | 1 cut(s) | 189 |
| SacII | CCGCGG | 1 cut(s) | 298 |
| SapI | GCTCTTC | 1 cut(s) | 177 |
| Sau3AI | GATC | 2 cut(s) | 325, 366 |
| SchI | GAGTC | 1 cut(s) | 437 |
| ScrFI | CCNGG | 1 cut(s) | 172 |
| SduI | GDGCHC | 1 cut(s) | 189 |
| Sfr303I | CCGCGG | 1 cut(s) | 298 |
| SgrBI | CCGCGG | 1 cut(s) | 298 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 36, 416 |
| Sse9I | AATT | 2 cut(s) | 87, 198 |
| SstI | GAGCTC | 1 cut(s) | 189 |
| StyD4I | CCNGG | 1 cut(s) | 170 |
| StyI | CCWWGG | 2 cut(s) | 231, 267 |
| TaiI | ACGT | 2 cut(s) | 294, 348 |
| TaqI | TCGA | 1 cut(s) | 252 |
| TasI | AATT | 2 cut(s) | 87, 198 |
| TauI | GCSGC | 6 cut(s) | 46, 158, 300, 395, 437, 460 |
| TseFI | GTSAC | 1 cut(s) | 278 |
| TseI | GCWGC | 5 cut(s) | 166, 373, 376, 421, 512 |
| Tsp45I | GTSAC | 1 cut(s) | 278 |
| TspDTI | ATGAA | 1 cut(s) | 354 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 238 |
| ZraI | GACGTC | 1 cut(s) | 292 |