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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 4 cut(s) | 13, 114, 329, 437 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 28 |
| AccBSI | CCGCTC | 1 cut(s) | 536 |
| AccII | CGCG | 2 cut(s) | 215, 402 |
| AclWI | GGATC | 3 cut(s) | 159, 178, 478 |
| AcoI | YGGCCR | 1 cut(s) | 414 |
| AcuI | CTGAAG | 2 cut(s) | 167, 173 |
| AcyI | GRCGYC | 2 cut(s) | 330, 449 |
| AfaI | GTAC | 1 cut(s) | 134 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 28, 124, 193 |
| AjnI | CCWGG | 2 cut(s) | 27, 489 |
| AleI | CACNNNNGTG | 1 cut(s) | 443 |
| AluBI | AGCT | 5 cut(s) | 43, 76, 97, 140, 486 |
| AluI | AGCT | 5 cut(s) | 43, 76, 97, 140, 486 |
| Alw26I | GTCTC | 2 cut(s) | 68, 306 |
| AlwI | GGATC | 3 cut(s) | 159, 178, 478 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 28, 43 |
| Ama87I | CYCGRG | 1 cut(s) | 539 |
| AoxI | GGCC | 3 cut(s) | 84, 265, 414 |
| ApeKI | GCWGC | 3 cut(s) | 37, 40, 486 |
| AspLEI | GCGC | 1 cut(s) | 332 |
| AspS9I | GGNCC | 1 cut(s) | 265 |
| AsuC2I | CCSGG | 1 cut(s) | 247 |
| AsuHPI | GGTGA | 2 cut(s) | 232, 498 |
| AvaI | CYCGRG | 1 cut(s) | 539 |
| BanI | GGYRCC | 4 cut(s) | 13, 114, 329, 437 |
| BauI | CACGAG | 1 cut(s) | 288 |
| BbvCI | CCTCAGC | 1 cut(s) | 44 |
| BbvI | GCAGC | 3 cut(s) | 49, 52, 473 |
| BccI | CCATC | 1 cut(s) | 428 |
| BceAI | ACGGC | 1 cut(s) | 252 |
| BciT130I | CCWGG | 2 cut(s) | 29, 491 |
| BclI | TGATCA | 1 cut(s) | 475 |
| BcnI | CCSGG | 1 cut(s) | 247 |
| BcoDI | GTCTC | 2 cut(s) | 68, 306 |
| BfaI | CTAG | 3 cut(s) | 8, 98, 453 |
| BfoI | RGCGCY | 1 cut(s) | 333 |
| BisI | GCNGC | 6 cut(s) | 38, 41, 204, 417, 487, 534 |
| BlpI | GCTNAGC | 1 cut(s) | 33 |
| BlsI | GCNGC | 6 cut(s) | 39, 42, 205, 418, 488, 535 |
| Bme1390I | CCNGG | 3 cut(s) | 29, 247, 491 |
| BmeT110I | CYCGRG | 1 cut(s) | 539 |
| BmgT120I | GGNCC | 1 cut(s) | 265 |
| BmiI | GGNNCC | 5 cut(s) | 15, 116, 284, 331, 439 |
| BmrFI | CCNGG | 3 cut(s) | 29, 247, 491 |
| BpmI | CTGGAG | 1 cut(s) | 50 |
| Bpu10I | CCTNAGC | 1 cut(s) | 44 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 33 |
| BpuMI | CCSGG | 1 cut(s) | 247 |
| BsaBI | GATNNNNATC | 1 cut(s) | 182 |
| BsaHI | GRCGYC | 2 cut(s) | 330, 449 |
| BsaI | GGTCTC | 2 cut(s) | 68, 306 |
| BsaJI | CCNNGG | 3 cut(s) | 27, 123, 213 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 361, 391 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 28, 124, 193 |
| Bse1I | ACTGG | 1 cut(s) | 162 |
| Bse8I | GATNNNNATC | 1 cut(s) | 182 |
| BseBI | CCWGG | 2 cut(s) | 29, 491 |
| BseDI | CCNNGG | 3 cut(s) | 27, 123, 213 |
| BseGI | GGATG | 3 cut(s) | 109, 361, 439 |
| BseJI | GATNNNNATC | 1 cut(s) | 182 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 28, 124, 193 |
| BseMII | CTCAG | 3 cut(s) | 24, 35, 377 |
| BseNI | ACTGG | 1 cut(s) | 162 |
| BseXI | GCAGC | 3 cut(s) | 49, 52, 473 |
| BseYI | CCCAGC | 4 cut(s) | 76, 262, 494, 511 |
| Bsh1236I | CGCG | 2 cut(s) | 215, 402 |
| BshFI | GGCC | 3 cut(s) | 86, 267, 416 |
| BshNI | GGYRCC | 4 cut(s) | 13, 114, 329, 437 |
| BsiHKCI | CYCGRG | 1 cut(s) | 539 |
| BsiSI | CCGG | 2 cut(s) | 247, 350 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 28, 124, 193 |
| BsmAI | GTCTC | 2 cut(s) | 68, 306 |
| BsnI | GGCC | 3 cut(s) | 86, 267, 416 |
| Bso31I | GGTCTC | 2 cut(s) | 68, 306 |
| BsoBI | CYCGRG | 1 cut(s) | 539 |
| Bsp143I | GATC | 4 cut(s) | 151, 183, 470, 475 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 33 |
| BspANI | GGCC | 3 cut(s) | 86, 267, 416 |
| BspCNI | CTCAG | 3 cut(s) | 25, 36, 376 |
| BspFNI | CGCG | 2 cut(s) | 215, 402 |
| BspLI | GGNNCC | 5 cut(s) | 15, 116, 284, 331, 439 |
| BspPI | GGATC | 3 cut(s) | 159, 178, 478 |
| BspT107I | GGYRCC | 4 cut(s) | 13, 114, 329, 437 |
| BspTNI | GGTCTC | 2 cut(s) | 68, 306 |
| BsrBI | CCGCTC | 1 cut(s) | 536 |
| BsrI | ACTGG | 1 cut(s) | 162 |
| BssECI | CCNNGG | 3 cut(s) | 27, 123, 213 |
| BssMI | GATC | 4 cut(s) | 151, 183, 470, 475 |
| BssNI | GRCGYC | 2 cut(s) | 330, 449 |
| BssSI | CACGAG | 1 cut(s) | 288 |
| BssT1I | CCWWGG | 1 cut(s) | 123 |
| Bst2BI | CACGAG | 1 cut(s) | 288 |
| Bst2UI | CCWGG | 2 cut(s) | 29, 491 |
| Bst4CI | ACNGT | 1 cut(s) | 62 |
| BstACI | GRCGYC | 2 cut(s) | 330, 449 |
| BstC8I | GCNNGC | 2 cut(s) | 23, 252 |
| BstDEI | CTNAG | 3 cut(s) | 33, 44, 363 |
| BstDSI | CCRYGG | 1 cut(s) | 213 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 122 |
| BstF5I | GGATG | 3 cut(s) | 109, 361, 439 |
| BstFNI | CGCG | 2 cut(s) | 215, 402 |
| BstH2I | RGCGCY | 1 cut(s) | 333 |
| BstHHI | GCGC | 1 cut(s) | 332 |
| BstKTI | GATC | 4 cut(s) | 154, 186, 473, 478 |
| BstMAI | GTCTC | 2 cut(s) | 68, 306 |
| BstMBI | GATC | 4 cut(s) | 151, 183, 470, 475 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 22, 212, 251 |
| BstNI | CCWGG | 2 cut(s) | 29, 491 |
| BstNSI | RCATGY | 1 cut(s) | 254 |
| BstSCI | CCNGG | 3 cut(s) | 27, 245, 489 |
| BstUI | CGCG | 2 cut(s) | 215, 402 |
| BstV1I | GCAGC | 3 cut(s) | 49, 52, 473 |
| BstX2I | RGATCY | 2 cut(s) | 183, 470 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 262 |
| BstYI | RGATCY | 2 cut(s) | 183, 470 |
| BsuRI | GGCC | 3 cut(s) | 86, 267, 416 |
| BtgI | CCRYGG | 1 cut(s) | 213 |
| BtsCI | GGATG | 3 cut(s) | 109, 361, 439 |
| BtsIMutI | CAGTG | 2 cut(s) | 116, 197 |
| Cac8I | GCNNGC | 2 cut(s) | 23, 252 |
| CaiI | CAGNNNCTG | 2 cut(s) | 28, 43 |
| CfoI | GCGC | 1 cut(s) | 332 |
| Cfr13I | GGNCC | 1 cut(s) | 265 |
| Cfr42I | CCGCGG | 1 cut(s) | 216 |
| CseI | GACGC | 2 cut(s) | 335, 457 |
| Csp6I | GTAC | 1 cut(s) | 133 |
| CviAII | CATG | 3 cut(s) | 251, 412, 467 |
| CviQI | GTAC | 1 cut(s) | 133 |
| DdeI | CTNAG | 3 cut(s) | 33, 44, 363 |
| DinI | GGCGCC | 1 cut(s) | 331 |
| DpnI | GATC | 4 cut(s) | 153, 185, 472, 477 |
| DpnII | GATC | 4 cut(s) | 151, 183, 470, 475 |
| EaeI | YGGCCR | 1 cut(s) | 414 |
| EciI | GGCGGA | 1 cut(s) | 368 |
| Eco130I | CCWWGG | 1 cut(s) | 123 |
| Eco31I | GGTCTC | 2 cut(s) | 68, 306 |
| Eco57I | CTGAAG | 2 cut(s) | 167, 173 |
| Eco88I | CYCGRG | 1 cut(s) | 539 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 122 |
| EcoRII | CCWGG | 2 cut(s) | 27, 489 |
| EcoT14I | CCWWGG | 1 cut(s) | 123 |
| EgeI | GGCGCC | 1 cut(s) | 331 |
| EheI | GGCGCC | 1 cut(s) | 331 |
| ErhI | CCWWGG | 1 cut(s) | 123 |
| FaeI | CATG | 3 cut(s) | 254, 415, 470 |
| FaiI | YATR | 6 cut(s) | 137, 252, 413, 423, 443, 468 |
| FatI | CATG | 3 cut(s) | 250, 411, 466 |
| FauI | CCCGC | 2 cut(s) | 272, 407 |
| FbaI | TGATCA | 1 cut(s) | 475 |
| Fnu4HI | GCNGC | 6 cut(s) | 38, 41, 204, 417, 487, 534 |
| FokI | GGATG | 3 cut(s) | 116, 368, 446 |
| Fsp4HI | GCNGC | 6 cut(s) | 38, 41, 204, 417, 487, 534 |
| FspBI | CTAG | 3 cut(s) | 8, 98, 453 |
| GlaI | GCGC | 1 cut(s) | 331 |
| GluI | GCNGC | 6 cut(s) | 38, 41, 204, 417, 487, 534 |
| GsaI | CCCAGC | 4 cut(s) | 80, 266, 498, 515 |
| GsuI | CTGGAG | 1 cut(s) | 50 |
| HaeII | RGCGCY | 1 cut(s) | 333 |
| HaeIII | GGCC | 3 cut(s) | 86, 267, 416 |
| HapII | CCGG | 2 cut(s) | 247, 350 |
| HgaI | GACGC | 2 cut(s) | 335, 457 |
| HhaI | GCGC | 1 cut(s) | 332 |
| Hin1I | GRCGYC | 2 cut(s) | 330, 449 |
| Hin1II | CATG | 3 cut(s) | 254, 415, 470 |
| Hin6I | GCGC | 1 cut(s) | 330 |
| HinP1I | GCGC | 1 cut(s) | 330 |
| HinfI | GANTC | 3 cut(s) | 197, 359, 370 |
| HpaII | CCGG | 2 cut(s) | 247, 350 |
| HphI | GGTGA | 2 cut(s) | 232, 498 |
| Hpy188I | TCNGA | 3 cut(s) | 366, 475, 480 |
| Hpy188III | TCNNGA | 2 cut(s) | 67, 539 |
| Hpy99I | CGWCG | 1 cut(s) | 273 |
| HpyAV | CCTTC | 3 cut(s) | 43, 142, 197 |
| HpyCH4III | ACNGT | 1 cut(s) | 62 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 22, 212, 251 |
| HpyF3I | CTNAG | 3 cut(s) | 33, 44, 363 |
| Hsp92I | GRCGYC | 2 cut(s) | 330, 449 |
| Hsp92II | CATG | 3 cut(s) | 254, 415, 470 |
| HspAI | GCGC | 1 cut(s) | 330 |
| KasI | GGCGCC | 1 cut(s) | 329 |
| Ksp22I | TGATCA | 1 cut(s) | 475 |
| KspI | CCGCGG | 1 cut(s) | 216 |
| Kzo9I | GATC | 4 cut(s) | 151, 183, 470, 475 |
| LmnI | GCTCC | 2 cut(s) | 73, 541 |
| Lsp1109I | GCAGC | 3 cut(s) | 49, 52, 473 |
| MaeI | CTAG | 3 cut(s) | 8, 98, 453 |
| MaeIII | GTNAC | 1 cut(s) | 445 |
| MalI | GATC | 4 cut(s) | 153, 185, 472, 477 |
| MbiI | CCGCTC | 1 cut(s) | 536 |
| MboI | GATC | 4 cut(s) | 151, 183, 470, 475 |
| MboII | GAAGA | 1 cut(s) | 187 |
| MflI | RGATCY | 2 cut(s) | 183, 470 |
| Mly113I | GGCGCC | 1 cut(s) | 330 |
| MlyI | GAGTC | 1 cut(s) | 364 |
| MseI | TTAA | 2 cut(s) | 171, 547 |
| MslI | CAYNNNNRTG | 1 cut(s) | 443 |
| MspA1I | CMGCKG | 5 cut(s) | 43, 215, 262, 279, 511 |
| MspI | CCGG | 2 cut(s) | 247, 350 |
| MspR9I | CCNGG | 3 cut(s) | 29, 247, 491 |
| MvaI | CCWGG | 2 cut(s) | 29, 491 |
| MvnI | CGCG | 2 cut(s) | 215, 402 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 22, 212, 251 |
| NarI | GGCGCC | 1 cut(s) | 330 |
| NciI | CCSGG | 1 cut(s) | 247 |
| NdeII | GATC | 4 cut(s) | 151, 183, 470, 475 |
| NlaIII | CATG | 3 cut(s) | 254, 415, 470 |
| NlaIV | GGNNCC | 5 cut(s) | 15, 116, 284, 331, 439 |
| NmeAIII | GCCGAG | 2 cut(s) | 42, 288 |
| NmuCI | GTSAC | 1 cut(s) | 445 |
| NspI | RCATGY | 1 cut(s) | 254 |
| OliI | CACNNNNGTG | 1 cut(s) | 443 |
| PaeI | GCATGC | 1 cut(s) | 254 |
| PfeI | GAWTC | 2 cut(s) | 197, 359 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 28 |
| PkrI | GCNGC | 6 cut(s) | 39, 42, 205, 418, 488, 535 |
| PleI | GAGTC | 1 cut(s) | 364 |
| PluTI | GGCGCC | 1 cut(s) | 333 |
| PpsI | GAGTC | 1 cut(s) | 364 |
| Psp6I | CCWGG | 2 cut(s) | 27, 489 |
| PspFI | CCCAGC | 4 cut(s) | 76, 262, 494, 511 |
| PspGI | CCWGG | 2 cut(s) | 27, 489 |
| PspN4I | GGNNCC | 5 cut(s) | 15, 116, 284, 331, 439 |
| PspPI | GGNCC | 1 cut(s) | 265 |
| PstNI | CAGNNNCTG | 2 cut(s) | 28, 43 |
| PsuI | RGATCY | 2 cut(s) | 183, 470 |
| PvuII | CAGCTG | 1 cut(s) | 43 |
| RsaI | GTAC | 1 cut(s) | 134 |
| RsaNI | GTAC | 1 cut(s) | 133 |
| RseI | CAYNNNNRTG | 1 cut(s) | 443 |
| SacII | CCGCGG | 1 cut(s) | 216 |
| SaqAI | TTAA | 2 cut(s) | 171, 547 |
| SatI | GCNGC | 6 cut(s) | 38, 41, 204, 417, 487, 534 |
| Sau3AI | GATC | 4 cut(s) | 151, 183, 470, 475 |
| Sau96I | GGNCC | 1 cut(s) | 265 |
| SchI | GAGTC | 1 cut(s) | 364 |
| ScrFI | CCNGG | 3 cut(s) | 29, 247, 491 |
| SetI | ASST | 9 cut(s) | 45, 78, 99, 142, 171, 222, 243, 379, 488 |
| SfoI | GGCGCC | 1 cut(s) | 331 |
| Sfr303I | CCGCGG | 1 cut(s) | 216 |
| SgrBI | CCGCGG | 1 cut(s) | 216 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 443 |
| SphI | GCATGC | 1 cut(s) | 254 |
| SspDI | GGCGCC | 1 cut(s) | 329 |
| SspMI | CTAG | 3 cut(s) | 8, 98, 453 |
| StyD4I | CCNGG | 3 cut(s) | 27, 245, 489 |
| StyI | CCWWGG | 1 cut(s) | 123 |
| TaaI | ACNGT | 1 cut(s) | 62 |
| TatI | WGTACW | 1 cut(s) | 132 |
| TauI | GCSGC | 3 cut(s) | 206, 419, 536 |
| TfiI | GAWTC | 2 cut(s) | 197, 359 |
| Tru1I | TTAA | 2 cut(s) | 171, 547 |
| Tru9I | TTAA | 2 cut(s) | 171, 547 |
| TscAI | CASTG | 2 cut(s) | 116, 197 |
| TseFI | GTSAC | 1 cut(s) | 445 |
| TseI | GCWGC | 3 cut(s) | 37, 40, 486 |
| Tsp45I | GTSAC | 1 cut(s) | 445 |
| TspDTI | ATGAA | 2 cut(s) | 71, 400 |
| TspRI | CASTG | 2 cut(s) | 116, 197 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 28 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 122 |
| XceI | RCATGY | 1 cut(s) | 254 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 294 |
| XspI | CTAG | 3 cut(s) | 8, 98, 453 |