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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 79, 149 |
| AccBSI | CCGCTC | 3 cut(s) | 358, 523, 676 |
| AccII | CGCG | 2 cut(s) | 290, 639 |
| AclWI | GGATC | 3 cut(s) | 344, 544, 557 |
| AcoI | YGGCCR | 1 cut(s) | 282 |
| AcuI | CTGAAG | 1 cut(s) | 290 |
| AcyI | GRCGYC | 1 cut(s) | 601 |
| AfaI | GTAC | 1 cut(s) | 165 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 51, 108, 271, 291, 514, 610 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 688 |
| AhlI | ACTAGT | 1 cut(s) | 94 |
| AjnI | CCWGG | 1 cut(s) | 552 |
| AleI | CACNNNNGTG | 1 cut(s) | 158 |
| AluBI | AGCT | 6 cut(s) | 268, 450, 529, 562, 583, 646 |
| AluI | AGCT | 6 cut(s) | 268, 450, 529, 562, 583, 646 |
| Alw26I | GTCTC | 4 cut(s) | 65, 218, 379, 570 |
| AlwI | GGATC | 3 cut(s) | 344, 544, 557 |
| Ama87I | CYCGRG | 3 cut(s) | 353, 513, 671 |
| AoxI | GGCC | 6 cut(s) | 134, 234, 252, 282, 570, 711 |
| ApaI | GGGCCC | 1 cut(s) | 238 |
| ApeKI | GCWGC | 4 cut(s) | 14, 212, 301, 526 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 403, 435 |
| AspLEI | GCGC | 1 cut(s) | 19 |
| AspS9I | GGNCC | 5 cut(s) | 234, 235, 411, 667, 712 |
| AsuC2I | CCSGG | 1 cut(s) | 694 |
| AsuHPI | GGTGA | 3 cut(s) | 286, 432, 598 |
| AvaI | CYCGRG | 3 cut(s) | 353, 513, 671 |
| AvaII | GGWCC | 2 cut(s) | 411, 667 |
| BaeGI | GKGCMC | 3 cut(s) | 45, 84, 238 |
| BamHI | GGATCC | 1 cut(s) | 549 |
| BanI | GGYRCC | 2 cut(s) | 79, 149 |
| BanII | GRGCYC | 1 cut(s) | 238 |
| BauI | CACGAG | 1 cut(s) | 482 |
| BbvI | GCAGC | 4 cut(s) | 26, 224, 313, 538 |
| BccI | CCATC | 1 cut(s) | 437 |
| BceAI | ACGGC | 2 cut(s) | 197, 269 |
| BciT130I | CCWGG | 1 cut(s) | 554 |
| BcnI | CCSGG | 1 cut(s) | 694 |
| BcoDI | GTCTC | 4 cut(s) | 65, 218, 379, 570 |
| BcuI | ACTAGT | 1 cut(s) | 94 |
| BfaI | CTAG | 1 cut(s) | 95 |
| BfmI | CTRYAG | 1 cut(s) | 719 |
| BfoI | RGCGCY | 1 cut(s) | 20 |
| BisI | GCNGC | 7 cut(s) | 15, 144, 213, 302, 524, 527, 640 |
| BlsI | GCNGC | 7 cut(s) | 16, 145, 214, 303, 525, 528, 641 |
| Bme1390I | CCNGG | 2 cut(s) | 554, 694 |
| Bme18I | GGWCC | 2 cut(s) | 411, 667 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 688 |
| BmeT110I | CYCGRG | 3 cut(s) | 353, 513, 671 |
| BmgT120I | GGNCC | 5 cut(s) | 234, 235, 411, 667, 712 |
| BmiI | GGNNCC | 8 cut(s) | 62, 81, 117, 151, 236, 412, 551, 668 |
| BmrFI | CCNGG | 2 cut(s) | 554, 694 |
| BmsI | GCATC | 2 cut(s) | 199, 208 |
| BoxI | GACNNNNGTC | 1 cut(s) | 466 |
| BpmI | CTGGAG | 1 cut(s) | 719 |
| BpuMI | CCSGG | 1 cut(s) | 694 |
| BsaHI | GRCGYC | 1 cut(s) | 601 |
| BsaI | GGTCTC | 1 cut(s) | 218 |
| BsaJI | CCNNGG | 5 cut(s) | 87, 512, 553, 609, 637 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 353, 383 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 51, 108, 271, 291, 514, 610 |
| BseBI | CCWGG | 1 cut(s) | 554 |
| BseDI | CCNNGG | 5 cut(s) | 87, 512, 553, 609, 637 |
| BseGI | GGATG | 2 cut(s) | 429, 595 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 51, 108, 271, 291, 514, 610 |
| BseSI | GKGCMC | 3 cut(s) | 45, 84, 238 |
| BseXI | GCAGC | 4 cut(s) | 26, 224, 313, 538 |
| BseYI | CCCAGC | 2 cut(s) | 264, 562 |
| BsgI | GTGCAG | 1 cut(s) | 320 |
| Bsh1236I | CGCG | 2 cut(s) | 290, 639 |
| BshFI | GGCC | 6 cut(s) | 136, 236, 254, 284, 572, 713 |
| BshNI | GGYRCC | 2 cut(s) | 79, 149 |
| BsiHKCI | CYCGRG | 3 cut(s) | 353, 513, 671 |
| BsiSI | CCGG | 1 cut(s) | 694 |
| BslFI | GGGAC | 3 cut(s) | 424, 676, 680 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 51, 108, 271, 291, 514, 610 |
| BsmAI | GTCTC | 4 cut(s) | 65, 218, 379, 570 |
| BsmFI | GGGAC | 3 cut(s) | 424, 676, 680 |
| BsmI | GAATGC | 1 cut(s) | 637 |
| BsnI | GGCC | 6 cut(s) | 136, 236, 254, 284, 572, 713 |
| Bso31I | GGTCTC | 1 cut(s) | 218 |
| BsoBI | CYCGRG | 3 cut(s) | 353, 513, 671 |
| Bsp120I | GGGCCC | 1 cut(s) | 234 |
| Bsp1286I | GDGCHC | 3 cut(s) | 45, 84, 238 |
| Bsp143I | GATC | 2 cut(s) | 349, 549 |
| BspANI | GGCC | 6 cut(s) | 136, 236, 254, 284, 572, 713 |
| BspFNI | CGCG | 2 cut(s) | 290, 639 |
| BspLI | GGNNCC | 8 cut(s) | 62, 81, 117, 151, 236, 412, 551, 668 |
| BspPI | GGATC | 3 cut(s) | 344, 544, 557 |
| BspT107I | GGYRCC | 2 cut(s) | 79, 149 |
| BspTNI | GGTCTC | 1 cut(s) | 218 |
| BsrBI | CCGCTC | 3 cut(s) | 358, 523, 676 |
| BssECI | CCNNGG | 5 cut(s) | 87, 512, 553, 609, 637 |
| BssMI | GATC | 2 cut(s) | 349, 549 |
| BssNI | GRCGYC | 1 cut(s) | 601 |
| BssSI | CACGAG | 1 cut(s) | 482 |
| BssT1I | CCWWGG | 2 cut(s) | 87, 609 |
| Bst2BI | CACGAG | 1 cut(s) | 482 |
| Bst2UI | CCWGG | 1 cut(s) | 554 |
| Bst4CI | ACNGT | 3 cut(s) | 76, 280, 415 |
| Bst6I | CTCTTC | 1 cut(s) | 195 |
| BstACI | GRCGYC | 1 cut(s) | 601 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 218 |
| BstC8I | GCNNGC | 6 cut(s) | 45, 238, 261, 585, 637, 644 |
| BstDSI | CCRYGG | 1 cut(s) | 637 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 608 |
| BstF5I | GGATG | 2 cut(s) | 429, 595 |
| BstFNI | CGCG | 2 cut(s) | 290, 639 |
| BstH2I | RGCGCY | 1 cut(s) | 20 |
| BstHHI | GCGC | 1 cut(s) | 19 |
| BstKTI | GATC | 2 cut(s) | 352, 552 |
| BstMAI | GTCTC | 4 cut(s) | 65, 218, 379, 570 |
| BstMBI | GATC | 2 cut(s) | 349, 549 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 118, 149, 218, 260, 265 |
| BstNI | CCWGG | 1 cut(s) | 554 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 466 |
| BstSCI | CCNGG | 2 cut(s) | 552, 692 |
| BstSFI | CTRYAG | 1 cut(s) | 719 |
| BstSLI | GKGCMC | 3 cut(s) | 45, 84, 238 |
| BstUI | CGCG | 2 cut(s) | 290, 639 |
| BstV1I | GCAGC | 4 cut(s) | 26, 224, 313, 538 |
| BstX2I | RGATCY | 1 cut(s) | 549 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 160 |
| BstYI | RGATCY | 1 cut(s) | 549 |
| BsuRI | GGCC | 6 cut(s) | 136, 236, 254, 284, 572, 713 |
| BtgI | CCRYGG | 1 cut(s) | 637 |
| BtsCI | GGATG | 2 cut(s) | 429, 595 |
| BtsI | GCAGTG | 1 cut(s) | 624 |
| BtsIMutI | CAGTG | 2 cut(s) | 192, 624 |
| Cac8I | GCNNGC | 6 cut(s) | 45, 238, 261, 585, 637, 644 |
| CfoI | GCGC | 1 cut(s) | 19 |
| Cfr13I | GGNCC | 5 cut(s) | 234, 235, 411, 667, 712 |
| Cfr42I | CCGCGG | 1 cut(s) | 640 |
| CseI | GACGC | 1 cut(s) | 609 |
| Csp6I | GTAC | 1 cut(s) | 164 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 37, 72 |
| CviAII | CATG | 3 cut(s) | 156, 499, 686 |
| CviQI | GTAC | 1 cut(s) | 164 |
| DpnI | GATC | 2 cut(s) | 351, 551 |
| DpnII | GATC | 2 cut(s) | 349, 549 |
| DriI | GACNNNNNGTC | 1 cut(s) | 688 |
| EaeI | YGGCCR | 1 cut(s) | 282 |
| Eam1104I | CTCTTC | 1 cut(s) | 195 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 688 |
| EarI | CTCTTC | 1 cut(s) | 195 |
| EciI | GGCGGA | 1 cut(s) | 602 |
| Eco130I | CCWWGG | 2 cut(s) | 87, 609 |
| Eco147I | AGGCCT | 1 cut(s) | 136 |
| Eco24I | GRGCYC | 1 cut(s) | 238 |
| Eco31I | GGTCTC | 1 cut(s) | 218 |
| Eco47I | GGWCC | 2 cut(s) | 411, 667 |
| Eco57I | CTGAAG | 1 cut(s) | 290 |
| Eco88I | CYCGRG | 3 cut(s) | 353, 513, 671 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 608 |
| EcoO109I | RGGNCCY | 2 cut(s) | 234, 667 |
| EcoRII | CCWGG | 1 cut(s) | 552 |
| EcoT14I | CCWWGG | 2 cut(s) | 87, 609 |
| EcoT38I | GRGCYC | 1 cut(s) | 238 |
| ErhI | CCWWGG | 2 cut(s) | 87, 609 |
| FaeI | CATG | 3 cut(s) | 159, 502, 689 |
| FaiI | YATR | 6 cut(s) | 104, 157, 333, 500, 687, 710 |
| FaqI | GGGAC | 3 cut(s) | 424, 676, 680 |
| FatI | CATG | 3 cut(s) | 155, 498, 685 |
| FauI | CCCGC | 6 cut(s) | 52, 100, 245, 283, 351, 644 |
| Fnu4HI | GCNGC | 7 cut(s) | 15, 144, 213, 302, 524, 527, 640 |
| FokI | GGATG | 2 cut(s) | 416, 602 |
| FriOI | GRGCYC | 1 cut(s) | 238 |
| Fsp4HI | GCNGC | 7 cut(s) | 15, 144, 213, 302, 524, 527, 640 |
| FspBI | CTAG | 1 cut(s) | 95 |
| GlaI | GCGC | 1 cut(s) | 18 |
| GluI | GCNGC | 7 cut(s) | 15, 144, 213, 302, 524, 527, 640 |
| GsaI | CCCAGC | 2 cut(s) | 268, 566 |
| GsuI | CTGGAG | 1 cut(s) | 719 |
| HaeII | RGCGCY | 1 cut(s) | 20 |
| HaeIII | GGCC | 6 cut(s) | 136, 236, 254, 284, 572, 713 |
| HapII | CCGG | 1 cut(s) | 694 |
| HgaI | GACGC | 1 cut(s) | 609 |
| HhaI | GCGC | 1 cut(s) | 19 |
| Hin1I | GRCGYC | 1 cut(s) | 601 |
| Hin1II | CATG | 3 cut(s) | 159, 502, 689 |
| Hin6I | GCGC | 1 cut(s) | 17 |
| HinP1I | GCGC | 1 cut(s) | 17 |
| HinfI | GANTC | 1 cut(s) | 317 |
| HpaII | CCGG | 1 cut(s) | 694 |
| HphI | GGTGA | 3 cut(s) | 286, 432, 598 |
| Hpy188III | TCNNGA | 3 cut(s) | 314, 343, 353 |
| Hpy99I | CGWCG | 6 cut(s) | 183, 290, 427, 603, 659, 662 |
| HpyAV | CCTTC | 2 cut(s) | 244, 265 |
| HpyCH4III | ACNGT | 3 cut(s) | 76, 280, 415 |
| HpyCH4V | TGCA | 5 cut(s) | 25, 169, 212, 301, 481 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 118, 149, 218, 260, 265 |
| Hsp92I | GRCGYC | 1 cut(s) | 601 |
| Hsp92II | CATG | 3 cut(s) | 159, 502, 689 |
| HspAI | GCGC | 1 cut(s) | 17 |
| KspI | CCGCGG | 1 cut(s) | 640 |
| Kzo9I | GATC | 2 cut(s) | 349, 549 |
| LmnI | GCTCC | 3 cut(s) | 11, 559, 700 |
| Lsp1109I | GCAGC | 4 cut(s) | 26, 224, 313, 538 |
| LweI | GCATC | 2 cut(s) | 199, 208 |
| MaeI | CTAG | 1 cut(s) | 95 |
| MaeIII | GTNAC | 2 cut(s) | 97, 274 |
| MalI | GATC | 2 cut(s) | 351, 551 |
| MbiI | CCGCTC | 3 cut(s) | 358, 523, 676 |
| MboI | GATC | 2 cut(s) | 349, 549 |
| MboII | GAAGA | 1 cut(s) | 212 |
| MflI | RGATCY | 1 cut(s) | 549 |
| MhlI | GDGCHC | 3 cut(s) | 45, 84, 238 |
| MlyI | GAGTC | 1 cut(s) | 311 |
| MmeI | TCCRAC | 1 cut(s) | 457 |
| MslI | CAYNNNNRTG | 1 cut(s) | 158 |
| MspA1I | CMGCKG | 4 cut(s) | 146, 268, 529, 639 |
| MspI | CCGG | 1 cut(s) | 694 |
| MspR9I | CCNGG | 2 cut(s) | 554, 694 |
| Mva1269I | GAATGC | 1 cut(s) | 637 |
| MvaI | CCWGG | 1 cut(s) | 554 |
| MvnI | CGCG | 2 cut(s) | 290, 639 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 118, 149, 218, 260, 265 |
| NciI | CCSGG | 1 cut(s) | 694 |
| NdeII | GATC | 2 cut(s) | 349, 549 |
| NlaIII | CATG | 3 cut(s) | 159, 502, 689 |
| NlaIV | GGNNCC | 8 cut(s) | 62, 81, 117, 151, 236, 412, 551, 668 |
| NmuCI | GTSAC | 2 cut(s) | 97, 274 |
| OliI | CACNNNNGTG | 1 cut(s) | 158 |
| PaeR7I | CTCGAG | 1 cut(s) | 671 |
| PceI | AGGCCT | 1 cut(s) | 136 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 213, 480, 678 |
| PctI | GAATGC | 1 cut(s) | 637 |
| PkrI | GCNGC | 7 cut(s) | 16, 145, 214, 303, 525, 528, 641 |
| PleI | GAGTC | 1 cut(s) | 311 |
| PpsI | GAGTC | 1 cut(s) | 311 |
| PpuMI | RGGWCCY | 1 cut(s) | 667 |
| PshAI | GACNNNNGTC | 1 cut(s) | 466 |
| Psp5II | RGGWCCY | 1 cut(s) | 667 |
| Psp6I | CCWGG | 1 cut(s) | 552 |
| PspFI | CCCAGC | 2 cut(s) | 264, 562 |
| PspGI | CCWGG | 1 cut(s) | 552 |
| PspN4I | GGNNCC | 8 cut(s) | 62, 81, 117, 151, 236, 412, 551, 668 |
| PspOMI | GGGCCC | 1 cut(s) | 234 |
| PspPI | GGNCC | 5 cut(s) | 234, 235, 411, 667, 712 |
| PspPPI | RGGWCCY | 1 cut(s) | 667 |
| PspXI | VCTCGAGB | 1 cut(s) | 671 |
| PsuI | RGATCY | 1 cut(s) | 549 |
| PvuII | CAGCTG | 2 cut(s) | 268, 529 |
| RsaI | GTAC | 1 cut(s) | 165 |
| RsaNI | GTAC | 1 cut(s) | 164 |
| RseI | CAYNNNNRTG | 1 cut(s) | 158 |
| SacII | CCGCGG | 1 cut(s) | 640 |
| SatI | GCNGC | 7 cut(s) | 15, 144, 213, 302, 524, 527, 640 |
| Sau3AI | GATC | 2 cut(s) | 349, 549 |
| Sau96I | GGNCC | 5 cut(s) | 234, 235, 411, 667, 712 |
| SchI | GAGTC | 1 cut(s) | 311 |
| ScrFI | CCNGG | 2 cut(s) | 554, 694 |
| SduI | GDGCHC | 3 cut(s) | 45, 84, 238 |
| SetI | ASST | 9 cut(s) | 270, 276, 300, 452, 531, 564, 585, 648, 672 |
| SfaNI | GCATC | 2 cut(s) | 199, 208 |
| SfcI | CTRYAG | 1 cut(s) | 719 |
| Sfr274I | CTCGAG | 1 cut(s) | 671 |
| Sfr303I | CCGCGG | 1 cut(s) | 640 |
| SgrBI | CCGCGG | 1 cut(s) | 640 |
| SinI | GGWCC | 2 cut(s) | 411, 667 |
| SlaI | CTCGAG | 1 cut(s) | 671 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 158 |
| SmlI | CTYRAG | 1 cut(s) | 671 |
| SmoI | CTYRAG | 1 cut(s) | 671 |
| SpeI | ACTAGT | 1 cut(s) | 94 |
| SseBI | AGGCCT | 1 cut(s) | 136 |
| SspMI | CTAG | 1 cut(s) | 95 |
| StuI | AGGCCT | 1 cut(s) | 136 |
| StyD4I | CCNGG | 2 cut(s) | 552, 692 |
| StyI | CCWWGG | 2 cut(s) | 87, 609 |
| TaaI | ACNGT | 3 cut(s) | 76, 280, 415 |
| TaqI | TCGA | 5 cut(s) | 131, 422, 452, 660, 672 |
| TaqII | GACCGA | 1 cut(s) | 362 |
| TauI | GCSGC | 3 cut(s) | 146, 526, 642 |
| TscAI | CASTG | 2 cut(s) | 199, 631 |
| TseFI | GTSAC | 2 cut(s) | 97, 274 |
| TseI | GCWGC | 4 cut(s) | 14, 212, 301, 526 |
| Tsp45I | GTSAC | 2 cut(s) | 97, 274 |
| TspDTI | ATGAA | 4 cut(s) | 140, 213, 362, 407 |
| TspRI | CASTG | 2 cut(s) | 199, 631 |
| VpaK11BI | GGWCC | 2 cut(s) | 411, 667 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 608 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 109, 580 |
| XhoI | CTCGAG | 1 cut(s) | 671 |
| XspI | CTAG | 1 cut(s) | 95 |