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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 220 |
| Acc16I | TGCGCA | 1 cut(s) | 2100 |
| Acc36I | ACCTGC | 2 cut(s) | 220, 1803 |
| Acc65I | GGTACC | 2 cut(s) | 168, 3160 |
| AccB1I | GGYRCC | 8 cut(s) | 168, 1570, 2155, 2167, 2466, 2786, 3038, 3160 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 724, 1349 |
| AccBSI | CCGCTC | 5 cut(s) | 1198, 1718, 2389, 2889, 2922 |
| AccI | GTMKAC | 1 cut(s) | 696 |
| AccII | CGCG | 6 cut(s) | 117, 1741, 1758, 2505, 2858, 2885 |
| AclWI | GGATC | 2 cut(s) | 861, 2598 |
| AcoI | YGGCCR | 4 cut(s) | 715, 726, 1281, 2775 |
| AcsI | RAATTY | 3 cut(s) | 386, 1588, 3007 |
| AcuI | CTGAAG | 4 cut(s) | 55, 2070, 2606, 3156 |
| AcvI | CACGTG | 1 cut(s) | 724 |
| AcyI | GRCGYC | 4 cut(s) | 1571, 2787, 2843, 3050 |
| AfaI | GTAC | 5 cut(s) | 170, 1907, 2230, 3162, 3194 |
| AflIII | ACRYGT | 1 cut(s) | 721 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 2412, 2554 |
| AjnI | CCWGG | 9 cut(s) | 185, 910, 1112, 1410, 1610, 2346, 2757, 2799, 3090 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 924, 956 |
| AleI | CACNNNNGTG | 1 cut(s) | 3044 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3114, 3146 |
| Alw21I | GWGCWC | 3 cut(s) | 788, 1154, 1395 |
| Alw44I | GTGCAC | 1 cut(s) | 1391 |
| AlwI | GGATC | 2 cut(s) | 861, 2598 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 85 |
| Ama87I | CYCGRG | 2 cut(s) | 1977, 3145 |
| ApaI | GGGCCC | 1 cut(s) | 2314 |
| ApaLI | GTGCAC | 1 cut(s) | 1391 |
| ApoI | RAATTY | 3 cut(s) | 386, 1588, 3007 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 331, 363 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 836 |
| Asp718I | GGTACC | 2 cut(s) | 168, 3160 |
| AsuC2I | CCSGG | 7 cut(s) | 205, 431, 994, 1320, 1830, 1915, 2686 |
| AsuNHI | GCTAGC | 4 cut(s) | 497, 577, 628, 959 |
| AvaI | CYCGRG | 2 cut(s) | 1977, 3145 |
| AvaII | GGWCC | 6 cut(s) | 331, 427, 1550, 1870, 2136, 2533 |
| BaeGI | GKGCMC | 3 cut(s) | 1395, 2160, 2314 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 288, 321 |
| BalI | TGGCCA | 1 cut(s) | 717 |
| BanI | GGYRCC | 8 cut(s) | 168, 1570, 2155, 2167, 2466, 2786, 3038, 3160 |
| BanII | GRGCYC | 4 cut(s) | 287, 1154, 2314, 3152 |
| BauI | CACGAG | 2 cut(s) | 1394, 2232 |
| BbrPI | CACGTG | 1 cut(s) | 724 |
| BbsI | GAAGAC | 3 cut(s) | 346, 785, 1599 |
| Bbv12I | GWGCWC | 3 cut(s) | 788, 1154, 1395 |
| BbvCI | CCTCAGC | 1 cut(s) | 2910 |
| BceAI | ACGGC | 5 cut(s) | 361, 713, 1271, 1373, 2845 |
| BciT130I | CCWGG | 9 cut(s) | 187, 912, 1114, 1412, 1612, 2348, 2759, 2801, 3092 |
| BclI | TGATCA | 2 cut(s) | 325, 2056 |
| BcnI | CCSGG | 7 cut(s) | 205, 431, 994, 1320, 1830, 1915, 2686 |
| BfmI | CTRYAG | 2 cut(s) | 1100, 1854 |
| BfoI | RGCGCY | 5 cut(s) | 1218, 1517, 1534, 1574, 2790 |
| BfuAI | ACCTGC | 2 cut(s) | 220, 1803 |
| BglI | GCCNNNNNGGC | 4 cut(s) | 129, 1919, 2729, 2866 |
| BlpI | GCTNAGC | 2 cut(s) | 260, 643 |
| Bme18I | GGWCC | 6 cut(s) | 331, 427, 1550, 1870, 2136, 2533 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 2412, 2554 |
| BmeT110I | CYCGRG | 2 cut(s) | 1977, 3145 |
| BmrI | ACTGGG | 2 cut(s) | 296, 2842 |
| BmsI | GCATC | 4 cut(s) | 78, 1375, 2488, 2961 |
| BmtI | GCTAGC | 4 cut(s) | 501, 581, 632, 963 |
| BmuI | ACTGGG | 2 cut(s) | 296, 2842 |
| BpiI | GAAGAC | 3 cut(s) | 346, 785, 1599 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1346, 1378, 2863, 2895 |
| BpmI | CTGGAG | 3 cut(s) | 2064, 2095, 2618 |
| Bpu10I | CCTNAGC | 3 cut(s) | 2396, 2910, 2923 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 260, 643 |
| BpuEI | CTTGAG | 4 cut(s) | 776, 1916, 2522, 2889 |
| BpuMI | CCSGG | 7 cut(s) | 205, 431, 994, 1320, 1830, 1915, 2686 |
| BsaAI | YACGTR | 1 cut(s) | 724 |
| BsaHI | GRCGYC | 4 cut(s) | 1571, 2787, 2843, 3050 |
| BsaI | GGTCTC | 4 cut(s) | 771, 979, 2294, 2420 |
| Bse118I | RCCGGY | 2 cut(s) | 2069, 3026 |
| Bse1I | ACTGG | 7 cut(s) | 302, 1373, 1539, 2030, 2171, 2601, 2848 |
| Bse3DI | GCAATG | 3 cut(s) | 1131, 2178, 2523 |
| BseBI | CCWGG | 9 cut(s) | 187, 912, 1114, 1412, 1612, 2348, 2759, 2801, 3092 |
| BseGI | GGATG | 3 cut(s) | 2962, 3040, 3121 |
| BseMI | GCAATG | 3 cut(s) | 1131, 2178, 2523 |
| BseMII | CTCAG | 8 cut(s) | 251, 1712, 2376, 2573, 2667, 2901, 2937, 3003 |
| BseNI | ACTGG | 7 cut(s) | 302, 1373, 1539, 2030, 2171, 2601, 2848 |
| BseRI | GAGGAG | 3 cut(s) | 2417, 2716, 3054 |
| BseSI | GKGCMC | 3 cut(s) | 1395, 2160, 2314 |
| BseYI | CCCAGC | 3 cut(s) | 78, 1926, 2139 |
| BsgI | GTGCAG | 1 cut(s) | 2681 |
| Bsh1236I | CGCG | 6 cut(s) | 117, 1741, 1758, 2505, 2858, 2885 |
| BshNI | GGYRCC | 8 cut(s) | 168, 1570, 2155, 2167, 2466, 2786, 3038, 3160 |
| BsiHKAI | GWGCWC | 3 cut(s) | 788, 1154, 1395 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1977, 3145 |
| BsiSI | CCGG | 9 cut(s) | 205, 431, 993, 1320, 1829, 1914, 2070, 2686, 3027 |
| BslFI | GGGAC | 8 cut(s) | 72, 178, 440, 1278, 1633, 2122, 2294, 2830 |
| BsmBI | CGTCTC | 2 cut(s) | 2141, 3194 |
| BsmFI | GGGAC | 8 cut(s) | 72, 178, 440, 1278, 1633, 2122, 2294, 2830 |
| Bso31I | GGTCTC | 4 cut(s) | 771, 979, 2294, 2420 |
| BsoBI | CYCGRG | 2 cut(s) | 1977, 3145 |
| Bsp120I | GGGCCC | 1 cut(s) | 2310 |
| Bsp1286I | GDGCHC | 7 cut(s) | 287, 788, 1154, 1395, 2160, 2314, 3152 |
| Bsp1407I | TGTACA | 1 cut(s) | 3192 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 260, 643 |
| Bsp19I | CCATGG | 2 cut(s) | 680, 3042 |
| BspCNI | CTCAG | 8 cut(s) | 252, 1711, 2377, 2572, 2666, 2902, 2936, 3002 |
| BspFNI | CGCG | 6 cut(s) | 117, 1741, 1758, 2505, 2858, 2885 |
| BspMI | ACCTGC | 2 cut(s) | 220, 1803 |
| BspOI | GCTAGC | 4 cut(s) | 501, 581, 632, 963 |
| BspPI | GGATC | 2 cut(s) | 861, 2598 |
| BspQI | GCTCTTC | 1 cut(s) | 1188 |
| BspT107I | GGYRCC | 8 cut(s) | 168, 1570, 2155, 2167, 2466, 2786, 3038, 3160 |
| BspTNI | GGTCTC | 4 cut(s) | 771, 979, 2294, 2420 |
| BsrBI | CCGCTC | 5 cut(s) | 1198, 1718, 2389, 2889, 2922 |
| BsrDI | GCAATG | 3 cut(s) | 1131, 2178, 2523 |
| BsrFI | RCCGGY | 2 cut(s) | 2069, 3026 |
| BsrGI | TGTACA | 1 cut(s) | 3192 |
| BsrI | ACTGG | 7 cut(s) | 302, 1373, 1539, 2030, 2171, 2601, 2848 |
| BssAI | RCCGGY | 2 cut(s) | 2069, 3026 |
| BssNI | GRCGYC | 4 cut(s) | 1571, 2787, 2843, 3050 |
| BssSI | CACGAG | 2 cut(s) | 1394, 2232 |
| BssT1I | CCWWGG | 6 cut(s) | 365, 680, 2475, 2724, 2778, 3042 |
| Bst2BI | CACGAG | 2 cut(s) | 1394, 2232 |
| Bst2UI | CCWGG | 9 cut(s) | 187, 912, 1114, 1412, 1612, 2348, 2759, 2801, 3092 |
| Bst6I | CTCTTC | 4 cut(s) | 681, 842, 1188, 1743 |
| BstACI | GRCGYC | 4 cut(s) | 1571, 2787, 2843, 3050 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1188 |
| BstAUI | TGTACA | 1 cut(s) | 3192 |
| BstBAI | YACGTR | 1 cut(s) | 724 |
| BstDSI | CCRYGG | 4 cut(s) | 680, 1557, 2503, 3042 |
| BstEII | GGTNACC | 1 cut(s) | 146 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2474 |
| BstF5I | GGATG | 3 cut(s) | 2962, 3040, 3121 |
| BstFNI | CGCG | 6 cut(s) | 117, 1741, 1758, 2505, 2858, 2885 |
| BstH2I | RGCGCY | 5 cut(s) | 1218, 1517, 1534, 1574, 2790 |
| BstNI | CCWGG | 9 cut(s) | 187, 912, 1114, 1412, 1612, 2348, 2759, 2801, 3092 |
| BstNSI | RCATGY | 2 cut(s) | 1906, 2216 |
| BstPI | GGTNACC | 1 cut(s) | 146 |
| BstSFI | CTRYAG | 2 cut(s) | 1100, 1854 |
| BstSLI | GKGCMC | 3 cut(s) | 1395, 2160, 2314 |
| BstUI | CGCG | 6 cut(s) | 117, 1741, 1758, 2505, 2858, 2885 |
| BstV2I | GAAGAC | 3 cut(s) | 346, 785, 1599 |
| BstX2I | RGATCY | 1 cut(s) | 853 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1867 |
| BstYI | RGATCY | 1 cut(s) | 853 |
| BtgI | CCRYGG | 4 cut(s) | 680, 1557, 2503, 3042 |
| BtgZI | GCGATG | 3 cut(s) | 775, 1880, 2777 |
| BtsCI | GGATG | 3 cut(s) | 2962, 3040, 3121 |
| BtsI | GCAGTG | 1 cut(s) | 2947 |
| BtsIMutI | CAGTG | 7 cut(s) | 309, 988, 1070, 1380, 2493, 2557, 2947 |
| BveI | ACCTGC | 2 cut(s) | 220, 1803 |
| CaiI | CAGNNNCTG | 1 cut(s) | 85 |
| Cfr10I | RCCGGY | 2 cut(s) | 2069, 3026 |
| Cfr42I | CCGCGG | 1 cut(s) | 2506 |
| CseI | GACGC | 7 cut(s) | 707, 952, 1325, 1747, 1859, 2832, 3058 |
| Csp6I | GTAC | 5 cut(s) | 169, 1906, 2229, 3161, 3193 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1935, 1970 |
| CviAII | CATG | 9 cut(s) | 44, 681, 1058, 1142, 1603, 1903, 2213, 3043, 3068 |
| CviQI | GTAC | 5 cut(s) | 169, 1906, 2229, 3161, 3193 |
| DinI | GGCGCC | 2 cut(s) | 1572, 2788 |
| DriI | GACNNNNNGTC | 2 cut(s) | 2412, 2554 |
| EaeI | YGGCCR | 4 cut(s) | 715, 726, 1281, 2775 |
| Eam1104I | CTCTTC | 4 cut(s) | 681, 842, 1188, 1743 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 2412, 2554 |
| EarI | CTCTTC | 4 cut(s) | 681, 842, 1188, 1743 |
| EciI | GGCGGA | 8 cut(s) | 398, 1329, 1397, 1577, 1815, 2331, 2710, 2969 |
| Ecl136II | GAGCTC | 1 cut(s) | 1152 |
| Eco130I | CCWWGG | 6 cut(s) | 365, 680, 2475, 2724, 2778, 3042 |
| Eco147I | AGGCCT | 1 cut(s) | 2717 |
| Eco24I | GRGCYC | 4 cut(s) | 287, 1154, 2314, 3152 |
| Eco31I | GGTCTC | 4 cut(s) | 771, 979, 2294, 2420 |
| Eco32I | GATATC | 1 cut(s) | 1090 |
| Eco47I | GGWCC | 6 cut(s) | 331, 427, 1550, 1870, 2136, 2533 |
| Eco53kI | GAGCTC | 1 cut(s) | 1152 |
| Eco57I | CTGAAG | 4 cut(s) | 55, 2070, 2606, 3156 |
| Eco72I | CACGTG | 1 cut(s) | 724 |
| Eco88I | CYCGRG | 2 cut(s) | 1977, 3145 |
| Eco91I | GGTNACC | 1 cut(s) | 146 |
| EcoICRI | GAGCTC | 1 cut(s) | 1152 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2474 |
| EcoO109I | RGGNCCY | 4 cut(s) | 427, 2136, 2310, 2533 |
| EcoO65I | GGTNACC | 1 cut(s) | 146 |
| EcoRII | CCWGG | 9 cut(s) | 185, 910, 1112, 1410, 1610, 2346, 2757, 2799, 3090 |
| EcoRV | GATATC | 1 cut(s) | 1090 |
| EcoT14I | CCWWGG | 6 cut(s) | 365, 680, 2475, 2724, 2778, 3042 |
| EcoT38I | GRGCYC | 4 cut(s) | 287, 1154, 2314, 3152 |
| EgeI | GGCGCC | 2 cut(s) | 1572, 2788 |
| EheI | GGCGCC | 2 cut(s) | 1572, 2788 |
| ErhI | CCWWGG | 6 cut(s) | 365, 680, 2475, 2724, 2778, 3042 |
| Esp3I | CGTCTC | 2 cut(s) | 2141, 3194 |
| FaeI | CATG | 9 cut(s) | 47, 684, 1061, 1145, 1606, 1906, 2216, 3046, 3071 |
| FaqI | GGGAC | 8 cut(s) | 72, 178, 440, 1278, 1633, 2122, 2294, 2830 |
| FatI | CATG | 9 cut(s) | 43, 680, 1057, 1141, 1602, 1902, 2212, 3042, 3067 |
| FbaI | TGATCA | 2 cut(s) | 325, 2056 |
| FblI | GTMKAC | 1 cut(s) | 696 |
| FokI | GGATG | 3 cut(s) | 2969, 3047, 3128 |
| FriOI | GRGCYC | 4 cut(s) | 287, 1154, 2314, 3152 |
| FspI | TGCGCA | 1 cut(s) | 2100 |
| GsaI | CCCAGC | 3 cut(s) | 82, 1930, 2143 |
| GsuI | CTGGAG | 3 cut(s) | 2064, 2095, 2618 |
| HaeII | RGCGCY | 5 cut(s) | 1218, 1517, 1534, 1574, 2790 |
| HapII | CCGG | 9 cut(s) | 205, 431, 993, 1320, 1829, 1914, 2070, 2686, 3027 |
| HgaI | GACGC | 7 cut(s) | 707, 952, 1325, 1747, 1859, 2832, 3058 |
| Hin1I | GRCGYC | 4 cut(s) | 1571, 2787, 2843, 3050 |
| Hin1II | CATG | 9 cut(s) | 47, 684, 1061, 1145, 1606, 1906, 2216, 3046, 3071 |
| HincII | GTYRAC | 2 cut(s) | 316, 1291 |
| HindII | GTYRAC | 2 cut(s) | 316, 1291 |
| HpaII | CCGG | 9 cut(s) | 205, 431, 993, 1320, 1829, 1914, 2070, 2686, 3027 |
| Hpy166II | GTNNAC | 8 cut(s) | 316, 697, 1291, 1393, 1425, 1942, 2231, 2455 |
| Hpy188I | TCNGA | 9 cut(s) | 87, 351, 657, 1000, 1078, 1972, 2656, 2992, 3076 |
| Hpy188III | TCNNGA | 9 cut(s) | 329, 770, 889, 929, 1585, 1687, 1895, 2611, 2925 |
| Hpy8I | GTNNAC | 8 cut(s) | 316, 697, 1291, 1393, 1425, 1942, 2231, 2455 |
| Hpy99I | CGWCG | 5 cut(s) | 339, 1853, 1939, 2024, 2270 |
| HpyAV | CCTTC | 9 cut(s) | 241, 749, 1588, 1814, 2158, 2320, 2581, 2687, 2812 |
| HpyCH4IV | ACGT | 5 cut(s) | 318, 723, 1421, 1622, 1952 |
| HpySE526I | ACGT | 5 cut(s) | 318, 723, 1421, 1622, 1952 |
| Hsp92I | GRCGYC | 4 cut(s) | 1571, 2787, 2843, 3050 |
| Hsp92II | CATG | 9 cut(s) | 47, 684, 1061, 1145, 1606, 1906, 2216, 3046, 3071 |
| KasI | GGCGCC | 2 cut(s) | 1570, 2786 |
| KflI | GGGWCCC | 2 cut(s) | 427, 2136 |
| KpnI | GGTACC | 2 cut(s) | 172, 3164 |
| KroI | GCCGGC | 1 cut(s) | 2069 |
| KroNI | GCCGGC | 1 cut(s) | 2071 |
| Ksp22I | TGATCA | 2 cut(s) | 325, 2056 |
| KspI | CCGCGG | 1 cut(s) | 2506 |
| LguI | GCTCTTC | 1 cut(s) | 1188 |
| LmnI | GCTCC | 8 cut(s) | 29, 1675, 2045, 2191, 2344, 2371, 2703, 2884 |
| LweI | GCATC | 4 cut(s) | 78, 1375, 2488, 2961 |
| MaeII | ACGT | 5 cut(s) | 318, 723, 1421, 1622, 1952 |
| MbiI | CCGCTC | 5 cut(s) | 1198, 1718, 2389, 2889, 2922 |
| MfeI | CAATTG | 1 cut(s) | 660 |
| MflI | RGATCY | 1 cut(s) | 853 |
| MhlI | GDGCHC | 7 cut(s) | 287, 788, 1154, 1395, 2160, 2314, 3152 |
| MlsI | TGGCCA | 1 cut(s) | 717 |
| MluCI | AATT | 8 cut(s) | 386, 660, 932, 1107, 1588, 1888, 2616, 3007 |
| MluNI | TGGCCA | 1 cut(s) | 717 |
| Mly113I | GGCGCC | 2 cut(s) | 1571, 2787 |
| MlyI | GAGTC | 9 cut(s) | 200, 446, 500, 539, 580, 646, 1031, 1814, 2086 |
| MmeI | TCCRAC | 4 cut(s) | 680, 1577, 1729, 2649 |
| Mox20I | TGGCCA | 1 cut(s) | 717 |
| MroNI | GCCGGC | 1 cut(s) | 2069 |
| MroXI | GAANNNNTTC | 1 cut(s) | 836 |
| MscI | TGGCCA | 1 cut(s) | 717 |
| MseI | TTAA | 5 cut(s) | 404, 816, 1518, 1692, 3096 |
| MslI | CAYNNNNRTG | 1 cut(s) | 3044 |
| Msp20I | TGGCCA | 1 cut(s) | 717 |
| MspA1I | CMGCKG | 7 cut(s) | 174, 449, 1232, 2090, 2222, 2505, 2665 |
| MspI | CCGG | 9 cut(s) | 205, 431, 993, 1320, 1829, 1914, 2070, 2686, 3027 |
| MunI | CAATTG | 1 cut(s) | 660 |
| MvaI | CCWGG | 9 cut(s) | 187, 912, 1114, 1412, 1612, 2348, 2759, 2801, 3092 |
| MvnI | CGCG | 6 cut(s) | 117, 1741, 1758, 2505, 2858, 2885 |
| NaeI | GCCGGC | 1 cut(s) | 2071 |
| NarI | GGCGCC | 2 cut(s) | 1571, 2787 |
| NciI | CCSGG | 7 cut(s) | 205, 431, 994, 1320, 1830, 1915, 2686 |
| NcoI | CCATGG | 2 cut(s) | 680, 3042 |
| NgoMIV | GCCGGC | 1 cut(s) | 2069 |
| NheI | GCTAGC | 4 cut(s) | 497, 577, 628, 959 |
| NlaIII | CATG | 9 cut(s) | 47, 684, 1061, 1145, 1606, 1906, 2216, 3046, 3071 |
| NmeAIII | GCCGAG | 2 cut(s) | 1903, 1992 |
| NmuCI | GTSAC | 6 cut(s) | 146, 730, 1417, 2350, 2518, 3046 |
| NsbI | TGCGCA | 1 cut(s) | 2100 |
| NspI | RCATGY | 2 cut(s) | 1906, 2216 |
| OliI | CACNNNNGTG | 1 cut(s) | 3044 |
| PaeR7I | CTCGAG | 1 cut(s) | 3145 |
| PaqCI | CACCTGC | 1 cut(s) | 220 |
| PasI | CCCWGGG | 2 cut(s) | 186, 1113 |
| PceI | AGGCCT | 1 cut(s) | 2717 |
| PciSI | GCTCTTC | 1 cut(s) | 1188 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 343, 1046 |
| PdiI | GCCGGC | 1 cut(s) | 2071 |
| PdmI | GAANNNNTTC | 1 cut(s) | 836 |
| PfeI | GAWTC | 5 cut(s) | 371, 832, 989, 1598, 2636 |
| PflFI | GACNNNGTC | 1 cut(s) | 345 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 724, 1349 |
| PleI | GAGTC | 9 cut(s) | 199, 446, 500, 539, 580, 646, 1031, 1814, 2085 |
| PluTI | GGCGCC | 2 cut(s) | 1574, 2790 |
| PmaCI | CACGTG | 1 cut(s) | 724 |
| PmlI | CACGTG | 1 cut(s) | 724 |
| PpsI | GAGTC | 9 cut(s) | 199, 446, 500, 539, 580, 646, 1031, 1814, 2085 |
| Ppu21I | YACGTR | 1 cut(s) | 724 |
| PpuMI | RGGWCCY | 3 cut(s) | 427, 2136, 2533 |
| Psp124BI | GAGCTC | 1 cut(s) | 1154 |
| Psp5II | RGGWCCY | 3 cut(s) | 427, 2136, 2533 |
| Psp6I | CCWGG | 9 cut(s) | 185, 910, 1112, 1410, 1610, 2346, 2757, 2799, 3090 |
| PspCI | CACGTG | 1 cut(s) | 724 |
| PspEI | GGTNACC | 1 cut(s) | 146 |
| PspFI | CCCAGC | 3 cut(s) | 78, 1926, 2139 |
| PspGI | CCWGG | 9 cut(s) | 185, 910, 1112, 1410, 1610, 2346, 2757, 2799, 3090 |
| PspOMI | GGGCCC | 1 cut(s) | 2310 |
| PspPPI | RGGWCCY | 3 cut(s) | 427, 2136, 2533 |
| PspXI | VCTCGAGB | 1 cut(s) | 3145 |
| PstNI | CAGNNNCTG | 1 cut(s) | 85 |
| PsuI | RGATCY | 1 cut(s) | 853 |
| PsyI | GACNNNGTC | 1 cut(s) | 345 |
| PvuII | CAGCTG | 2 cut(s) | 2090, 2665 |
| RsaI | GTAC | 5 cut(s) | 170, 1907, 2230, 3162, 3194 |
| RsaNI | GTAC | 5 cut(s) | 169, 1906, 2229, 3161, 3193 |
| RseI | CAYNNNNRTG | 1 cut(s) | 3044 |
| SacI | GAGCTC | 1 cut(s) | 1154 |
| SacII | CCGCGG | 1 cut(s) | 2506 |
| SapI | GCTCTTC | 1 cut(s) | 1188 |
| SaqAI | TTAA | 5 cut(s) | 404, 816, 1518, 1692, 3096 |
| SchI | GAGTC | 9 cut(s) | 200, 446, 500, 539, 580, 646, 1031, 1814, 2086 |
| SduI | GDGCHC | 7 cut(s) | 287, 788, 1154, 1395, 2160, 2314, 3152 |
| SfaNI | GCATC | 4 cut(s) | 78, 1375, 2488, 2961 |
| SfcI | CTRYAG | 2 cut(s) | 1100, 1854 |
| SfoI | GGCGCC | 2 cut(s) | 1572, 2788 |
| Sfr274I | CTCGAG | 1 cut(s) | 3145 |
| Sfr303I | CCGCGG | 1 cut(s) | 2506 |
| SgrBI | CCGCGG | 1 cut(s) | 2506 |
| SinI | GGWCC | 6 cut(s) | 331, 427, 1550, 1870, 2136, 2533 |
| SlaI | CTCGAG | 1 cut(s) | 3145 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 3044 |
| SmlI | CTYRAG | 5 cut(s) | 791, 1895, 2537, 2904, 3145 |
| SmoI | CTYRAG | 5 cut(s) | 791, 1895, 2537, 2904, 3145 |
| Sse9I | AATT | 8 cut(s) | 386, 660, 932, 1107, 1588, 1888, 2616, 3007 |
| SseBI | AGGCCT | 1 cut(s) | 2717 |
| SspDI | GGCGCC | 2 cut(s) | 1570, 2786 |
| SstI | GAGCTC | 1 cut(s) | 1154 |
| StuI | AGGCCT | 1 cut(s) | 2717 |
| StyI | CCWWGG | 6 cut(s) | 365, 680, 2475, 2724, 2778, 3042 |
| TaiI | ACGT | 5 cut(s) | 321, 726, 1424, 1625, 1955 |
| TaqI | TCGA | 8 cut(s) | 337, 890, 1092, 1584, 1714, 1818, 1848, 3146 |
| TasI | AATT | 8 cut(s) | 386, 660, 932, 1107, 1588, 1888, 2616, 3007 |
| TatI | WGTACW | 2 cut(s) | 2228, 3192 |
| TfiI | GAWTC | 5 cut(s) | 371, 832, 989, 1598, 2636 |
| Tru1I | TTAA | 5 cut(s) | 404, 816, 1518, 1692, 3096 |
| Tru9I | TTAA | 5 cut(s) | 404, 816, 1518, 1692, 3096 |
| TscAI | CASTG | 7 cut(s) | 309, 988, 1077, 1380, 2500, 2557, 2947 |
| TseFI | GTSAC | 6 cut(s) | 146, 730, 1417, 2350, 2518, 3046 |
| Tsp45I | GTSAC | 6 cut(s) | 146, 730, 1417, 2350, 2518, 3046 |
| TspDTI | ATGAA | 1 cut(s) | 837 |
| TspGWI | ACGGA | 6 cut(s) | 211, 384, 1034, 1038, 2312, 3047 |
| TspRI | CASTG | 7 cut(s) | 309, 988, 1077, 1380, 2500, 2557, 2947 |
| Tth111I | GACNNNGTC | 1 cut(s) | 345 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 724, 1349 |
| VneI | GTGCAC | 1 cut(s) | 1391 |
| VpaK11BI | GGWCC | 6 cut(s) | 331, 427, 1550, 1870, 2136, 2533 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2474 |
| XapI | RAATTY | 3 cut(s) | 386, 1588, 3007 |
| XceI | RCATGY | 2 cut(s) | 1906, 2216 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 1372, 2185, 2446, 2797 |
| XhoI | CTCGAG | 1 cut(s) | 3145 |
| XmiI | GTMKAC | 1 cut(s) | 696 |
| XmnI | GAANNNNTTC | 1 cut(s) | 836 |