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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 302 |
| Acc36I | ACCTGC | 1 cut(s) | 302 |
| AccB1I | GGYRCC | 1 cut(s) | 464 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 542 |
| AccBSI | CCGCTC | 1 cut(s) | 524 |
| AcoI | YGGCCR | 2 cut(s) | 367, 519 |
| AcsI | RAATTY | 1 cut(s) | 49 |
| AcyI | GRCGYC | 1 cut(s) | 476 |
| AfaI | GTAC | 3 cut(s) | 179, 286, 390 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 314, 337, 376, 454, 539, 542 |
| AgsI | TTSAA | 3 cut(s) | 14, 238, 419 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 480 |
| AjnI | CCWGG | 2 cut(s) | 438, 516 |
| AleI | CACNNNNGTG | 2 cut(s) | 455, 470 |
| AluBI | AGCT | 3 cut(s) | 94, 188, 221 |
| AluI | AGCT | 3 cut(s) | 94, 188, 221 |
| AoxI | GGCC | 6 cut(s) | 156, 207, 317, 367, 445, 519 |
| ApeKI | GCWGC | 4 cut(s) | 107, 215, 218, 354 |
| ApoI | RAATTY | 1 cut(s) | 49 |
| AspS9I | GGNCC | 4 cut(s) | 129, 317, 396, 445 |
| AsuC2I | CCSGG | 1 cut(s) | 112 |
| AsuHPI | GGTGA | 3 cut(s) | 113, 484, 557 |
| AvaII | GGWCC | 2 cut(s) | 129, 396 |
| AxyI | CCTNAGG | 1 cut(s) | 336 |
| BanI | GGYRCC | 1 cut(s) | 464 |
| BanII | GRGCYC | 1 cut(s) | 29 |
| BbvI | GCAGC | 4 cut(s) | 94, 202, 230, 366 |
| BccI | CCATC | 2 cut(s) | 187, 455 |
| BciT130I | CCWGG | 2 cut(s) | 440, 518 |
| BclI | TGATCA | 2 cut(s) | 252, 502 |
| BcnI | CCSGG | 1 cut(s) | 112 |
| BfmI | CTRYAG | 1 cut(s) | 216 |
| BfuAI | ACCTGC | 1 cut(s) | 302 |
| BisI | GCNGC | 8 cut(s) | 108, 201, 216, 219, 355, 367, 514, 522 |
| BlpI | GCTNAGC | 1 cut(s) | 525 |
| BlsI | GCNGC | 8 cut(s) | 109, 202, 217, 220, 356, 368, 515, 523 |
| Bme1390I | CCNGG | 3 cut(s) | 112, 440, 518 |
| Bme18I | GGWCC | 2 cut(s) | 129, 396 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 480 |
| BmgT120I | GGNCC | 4 cut(s) | 129, 317, 396, 445 |
| BmiI | GGNNCC | 5 cut(s) | 28, 131, 270, 398, 466 |
| BmrFI | CCNGG | 3 cut(s) | 112, 440, 518 |
| BmrI | ACTGGG | 2 cut(s) | 268, 406 |
| BmuI | ACTGGG | 2 cut(s) | 268, 406 |
| BpmI | CTGGAG | 1 cut(s) | 156 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 525 |
| BpuEI | CTTGAG | 1 cut(s) | 116 |
| BpuMI | CCSGG | 1 cut(s) | 112 |
| BsaHI | GRCGYC | 1 cut(s) | 476 |
| BsaJI | CCNNGG | 4 cut(s) | 30, 370, 468, 493 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 314, 337, 376, 454, 539, 542 |
| Bse118I | RCCGGY | 3 cut(s) | 68, 209, 307 |
| Bse1I | ACTGG | 5 cut(s) | 263, 282, 302, 412, 536 |
| Bse21I | CCTNAGG | 1 cut(s) | 336 |
| BseBI | CCWGG | 2 cut(s) | 440, 518 |
| BseDI | CCNNGG | 4 cut(s) | 30, 370, 468, 493 |
| BseGI | GGATG | 3 cut(s) | 268, 388, 466 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 314, 337, 376, 454, 539, 542 |
| BseMII | CTCAG | 2 cut(s) | 423, 539 |
| BseNI | ACTGG | 5 cut(s) | 263, 282, 302, 412, 536 |
| BseXI | GCAGC | 4 cut(s) | 94, 202, 230, 366 |
| BshFI | GGCC | 6 cut(s) | 158, 209, 319, 369, 447, 521 |
| BshNI | GGYRCC | 1 cut(s) | 464 |
| BsiSI | CCGG | 4 cut(s) | 69, 112, 210, 308 |
| BslFI | GGGAC | 1 cut(s) | 409 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 314, 337, 376, 454, 539, 542 |
| BsmFI | GGGAC | 1 cut(s) | 409 |
| BsmI | GAATGC | 1 cut(s) | 346 |
| BsnI | GGCC | 6 cut(s) | 158, 209, 319, 369, 447, 521 |
| Bsp1286I | GDGCHC | 1 cut(s) | 29 |
| Bsp143I | GATC | 2 cut(s) | 252, 502 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 525 |
| Bsp19I | CCATGG | 3 cut(s) | 370, 468, 493 |
| BspANI | GGCC | 6 cut(s) | 158, 209, 319, 369, 447, 521 |
| BspCNI | CTCAG | 2 cut(s) | 424, 538 |
| BspLI | GGNNCC | 5 cut(s) | 28, 131, 270, 398, 466 |
| BspMAI | CTGCAG | 1 cut(s) | 220 |
| BspMI | ACCTGC | 1 cut(s) | 302 |
| BspT107I | GGYRCC | 1 cut(s) | 464 |
| BsrBI | CCGCTC | 1 cut(s) | 524 |
| BsrFI | RCCGGY | 3 cut(s) | 68, 209, 307 |
| BsrI | ACTGG | 5 cut(s) | 263, 282, 302, 412, 536 |
| BssAI | RCCGGY | 3 cut(s) | 68, 209, 307 |
| BssECI | CCNNGG | 4 cut(s) | 30, 370, 468, 493 |
| BssMI | GATC | 2 cut(s) | 252, 502 |
| BssNI | GRCGYC | 1 cut(s) | 476 |
| BssT1I | CCWWGG | 4 cut(s) | 30, 370, 468, 493 |
| Bst2UI | CCWGG | 2 cut(s) | 440, 518 |
| Bst4CI | ACNGT | 1 cut(s) | 325 |
| BstACI | GRCGYC | 1 cut(s) | 476 |
| BstC8I | GCNNGC | 4 cut(s) | 70, 186, 309, 445 |
| BstDEI | CTNAG | 3 cut(s) | 336, 432, 525 |
| BstDSI | CCRYGG | 3 cut(s) | 370, 468, 493 |
| BstF5I | GGATG | 3 cut(s) | 268, 388, 466 |
| BstKTI | GATC | 2 cut(s) | 255, 505 |
| BstMBI | GATC | 2 cut(s) | 252, 502 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 16, 91, 206, 215, 304, 363 |
| BstNI | CCWGG | 2 cut(s) | 440, 518 |
| BstSCI | CCNGG | 3 cut(s) | 110, 438, 516 |
| BstSFI | CTRYAG | 1 cut(s) | 216 |
| BstV1I | GCAGC | 4 cut(s) | 94, 202, 230, 366 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 517 |
| Bsu36I | CCTNAGG | 1 cut(s) | 336 |
| BsuRI | GGCC | 6 cut(s) | 158, 209, 319, 369, 447, 521 |
| BtgI | CCRYGG | 3 cut(s) | 370, 468, 493 |
| BtgZI | GCGATG | 1 cut(s) | 372 |
| BtsCI | GGATG | 3 cut(s) | 268, 388, 466 |
| BtsI | GCAGTG | 1 cut(s) | 401 |
| BtsIMutI | CAGTG | 2 cut(s) | 309, 401 |
| BveI | ACCTGC | 1 cut(s) | 302 |
| Cac8I | GCNNGC | 4 cut(s) | 70, 186, 309, 445 |
| Cfr10I | RCCGGY | 3 cut(s) | 68, 209, 307 |
| Cfr13I | GGNCC | 4 cut(s) | 129, 317, 396, 445 |
| CseI | GACGC | 1 cut(s) | 484 |
| Csp6I | GTAC | 3 cut(s) | 178, 285, 389 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 397, 432 |
| CviAII | CATG | 3 cut(s) | 371, 469, 494 |
| CviQI | GTAC | 3 cut(s) | 178, 285, 389 |
| DdeI | CTNAG | 3 cut(s) | 336, 432, 525 |
| DpnI | GATC | 2 cut(s) | 254, 504 |
| DpnII | GATC | 2 cut(s) | 252, 502 |
| DriI | GACNNNNNGTC | 1 cut(s) | 480 |
| EaeI | YGGCCR | 2 cut(s) | 367, 519 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 480 |
| EciI | GGCGGA | 1 cut(s) | 395 |
| Eco130I | CCWWGG | 4 cut(s) | 30, 370, 468, 493 |
| Eco147I | AGGCCT | 1 cut(s) | 158 |
| Eco24I | GRGCYC | 1 cut(s) | 29 |
| Eco47I | GGWCC | 2 cut(s) | 129, 396 |
| Eco81I | CCTNAGG | 1 cut(s) | 336 |
| EcoO109I | RGGNCCY | 1 cut(s) | 129 |
| EcoRII | CCWGG | 2 cut(s) | 438, 516 |
| EcoT14I | CCWWGG | 4 cut(s) | 30, 370, 468, 493 |
| EcoT38I | GRGCYC | 1 cut(s) | 29 |
| ErhI | CCWWGG | 4 cut(s) | 30, 370, 468, 493 |
| FaeI | CATG | 3 cut(s) | 374, 472, 497 |
| FaiI | YATR | 3 cut(s) | 372, 470, 495 |
| FaqI | GGGAC | 1 cut(s) | 409 |
| FatI | CATG | 3 cut(s) | 370, 468, 493 |
| FauI | CCCGC | 1 cut(s) | 436 |
| FbaI | TGATCA | 2 cut(s) | 252, 502 |
| Fnu4HI | GCNGC | 8 cut(s) | 108, 201, 216, 219, 355, 367, 514, 522 |
| FokI | GGATG | 3 cut(s) | 275, 395, 473 |
| FriOI | GRGCYC | 1 cut(s) | 29 |
| Fsp4HI | GCNGC | 8 cut(s) | 108, 201, 216, 219, 355, 367, 514, 522 |
| GluI | GCNGC | 8 cut(s) | 108, 201, 216, 219, 355, 367, 514, 522 |
| GsuI | CTGGAG | 1 cut(s) | 156 |
| HaeIII | GGCC | 6 cut(s) | 158, 209, 319, 369, 447, 521 |
| HapII | CCGG | 4 cut(s) | 69, 112, 210, 308 |
| HgaI | GACGC | 1 cut(s) | 484 |
| Hin1I | GRCGYC | 1 cut(s) | 476 |
| Hin1II | CATG | 3 cut(s) | 374, 472, 497 |
| HincII | GTYRAC | 1 cut(s) | 328 |
| HindII | GTYRAC | 1 cut(s) | 328 |
| HindIII | AAGCTT | 1 cut(s) | 92 |
| HinfI | GANTC | 3 cut(s) | 238, 292, 481 |
| HpaII | CCGG | 4 cut(s) | 69, 112, 210, 308 |
| HphI | GGTGA | 3 cut(s) | 113, 484, 557 |
| Hpy166II | GTNNAC | 1 cut(s) | 328 |
| Hpy188I | TCNGA | 4 cut(s) | 192, 243, 502, 568 |
| Hpy188III | TCNNGA | 2 cut(s) | 173, 229 |
| Hpy8I | GTNNAC | 1 cut(s) | 328 |
| Hpy99I | CGWCG | 2 cut(s) | 230, 292 |
| HpyAV | CCTTC | 2 cut(s) | 199, 238 |
| HpyCH4III | ACNGT | 1 cut(s) | 325 |
| HpyCH4IV | ACGT | 3 cut(s) | 225, 287, 387 |
| HpyCH4V | TGCA | 2 cut(s) | 218, 346 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 16, 91, 206, 215, 304, 363 |
| HpyF3I | CTNAG | 3 cut(s) | 336, 432, 525 |
| HpySE526I | ACGT | 3 cut(s) | 225, 287, 387 |
| Hsp92I | GRCGYC | 1 cut(s) | 476 |
| Hsp92II | CATG | 3 cut(s) | 374, 472, 497 |
| KroI | GCCGGC | 2 cut(s) | 68, 307 |
| KroNI | GCCGGC | 2 cut(s) | 70, 309 |
| Ksp22I | TGATCA | 2 cut(s) | 252, 502 |
| Kzo9I | GATC | 2 cut(s) | 252, 502 |
| LmnI | GCTCC | 3 cut(s) | 32, 82, 274 |
| Lsp1109I | GCAGC | 4 cut(s) | 94, 202, 230, 366 |
| MaeII | ACGT | 3 cut(s) | 225, 287, 387 |
| MaeIII | GTNAC | 2 cut(s) | 145, 472 |
| MalI | GATC | 2 cut(s) | 254, 504 |
| MbiI | CCGCTC | 1 cut(s) | 524 |
| MboI | GATC | 2 cut(s) | 252, 502 |
| MboII | GAAGA | 2 cut(s) | 100, 560 |
| MhlI | GDGCHC | 1 cut(s) | 29 |
| MluCI | AATT | 1 cut(s) | 49 |
| MlyI | GAGTC | 2 cut(s) | 301, 490 |
| MnlI | CCTC | 8 cut(s) | 55, 91, 97, 120, 148, 190, 259, 574 |
| MroNI | GCCGGC | 2 cut(s) | 68, 307 |
| MslI | CAYNNNNRTG | 2 cut(s) | 455, 470 |
| MspI | CCGG | 4 cut(s) | 69, 112, 210, 308 |
| MspR9I | CCNGG | 3 cut(s) | 112, 440, 518 |
| Mva1269I | GAATGC | 1 cut(s) | 346 |
| MvaI | CCWGG | 2 cut(s) | 440, 518 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 16, 91, 206, 215, 304, 363 |
| NaeI | GCCGGC | 2 cut(s) | 70, 309 |
| NciI | CCSGG | 1 cut(s) | 112 |
| NcoI | CCATGG | 3 cut(s) | 370, 468, 493 |
| NdeII | GATC | 2 cut(s) | 252, 502 |
| NgoMIV | GCCGGC | 2 cut(s) | 68, 307 |
| NlaIII | CATG | 3 cut(s) | 374, 472, 497 |
| NlaIV | GGNNCC | 5 cut(s) | 28, 131, 270, 398, 466 |
| NmeAIII | GCCGAG | 1 cut(s) | 504 |
| NmuCI | GTSAC | 1 cut(s) | 472 |
| OliI | CACNNNNGTG | 2 cut(s) | 455, 470 |
| PaqCI | CACCTGC | 1 cut(s) | 302 |
| PceI | AGGCCT | 1 cut(s) | 158 |
| PctI | GAATGC | 1 cut(s) | 346 |
| PdiI | GCCGGC | 2 cut(s) | 70, 309 |
| PfeI | GAWTC | 1 cut(s) | 238 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 542 |
| PkrI | GCNGC | 8 cut(s) | 109, 202, 217, 220, 356, 368, 515, 523 |
| PleI | GAGTC | 2 cut(s) | 300, 489 |
| PpsI | GAGTC | 2 cut(s) | 300, 489 |
| PpuMI | RGGWCCY | 1 cut(s) | 129 |
| Psp5II | RGGWCCY | 1 cut(s) | 129 |
| Psp6I | CCWGG | 2 cut(s) | 438, 516 |
| PspGI | CCWGG | 2 cut(s) | 438, 516 |
| PspN4I | GGNNCC | 5 cut(s) | 28, 131, 270, 398, 466 |
| PspPI | GGNCC | 4 cut(s) | 129, 317, 396, 445 |
| PspPPI | RGGWCCY | 1 cut(s) | 129 |
| PstI | CTGCAG | 1 cut(s) | 220 |
| RsaI | GTAC | 3 cut(s) | 179, 286, 390 |
| RsaNI | GTAC | 3 cut(s) | 178, 285, 389 |
| RseI | CAYNNNNRTG | 2 cut(s) | 455, 470 |
| SatI | GCNGC | 8 cut(s) | 108, 201, 216, 219, 355, 367, 514, 522 |
| Sau3AI | GATC | 2 cut(s) | 252, 502 |
| Sau96I | GGNCC | 4 cut(s) | 129, 317, 396, 445 |
| SchI | GAGTC | 2 cut(s) | 301, 490 |
| ScrFI | CCNGG | 3 cut(s) | 112, 440, 518 |
| SduI | GDGCHC | 1 cut(s) | 29 |
| SetI | ASST | 9 cut(s) | 66, 78, 96, 190, 223, 228, 290, 316, 390 |
| SfcI | CTRYAG | 1 cut(s) | 216 |
| SinI | GGWCC | 2 cut(s) | 129, 396 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 455, 470 |
| SmlI | CTYRAG | 1 cut(s) | 95 |
| SmoI | CTYRAG | 1 cut(s) | 95 |
| Sse9I | AATT | 1 cut(s) | 49 |
| SseBI | AGGCCT | 1 cut(s) | 158 |
| StuI | AGGCCT | 1 cut(s) | 158 |
| StyD4I | CCNGG | 3 cut(s) | 110, 438, 516 |
| StyI | CCWWGG | 4 cut(s) | 30, 370, 468, 493 |
| TaaI | ACNGT | 1 cut(s) | 325 |
| TaiI | ACGT | 3 cut(s) | 228, 290, 390 |
| TaqI | TCGA | 2 cut(s) | 228, 290 |
| TasI | AATT | 1 cut(s) | 49 |
| TatI | WGTACW | 1 cut(s) | 177 |
| TauI | GCSGC | 4 cut(s) | 203, 369, 516, 524 |
| TfiI | GAWTC | 1 cut(s) | 238 |
| TscAI | CASTG | 2 cut(s) | 309, 408 |
| TseFI | GTSAC | 1 cut(s) | 472 |
| TseI | GCWGC | 4 cut(s) | 107, 215, 218, 354 |
| Tsp45I | GTSAC | 1 cut(s) | 472 |
| TspDTI | ATGAA | 1 cut(s) | 375 |
| TspRI | CASTG | 2 cut(s) | 309, 408 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 542 |
| VpaK11BI | GGWCC | 2 cut(s) | 129, 396 |
| XapI | RAATTY | 1 cut(s) | 49 |