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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 505, 581 |
| AccBSI | CCGCTC | 2 cut(s) | 37, 588 |
| AccII | CGCG | 4 cut(s) | 357, 708, 718, 723 |
| AclWI | GGATC | 2 cut(s) | 49, 62 |
| AcoI | YGGCCR | 2 cut(s) | 168, 246 |
| AcuI | CTGAAG | 1 cut(s) | 366 |
| AcyI | GRCGYC | 1 cut(s) | 14 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 124, 177, 235, 280, 502, 591, 661 |
| AgsI | TTSAA | 3 cut(s) | 377, 385, 578 |
| AjiI | CACGTC | 1 cut(s) | 184 |
| AjnI | CCWGG | 5 cut(s) | 6, 27, 57, 293, 657 |
| AluBI | AGCT | 4 cut(s) | 160, 211, 344, 752 |
| AluI | AGCT | 4 cut(s) | 160, 211, 344, 752 |
| Alw26I | GTCTC | 1 cut(s) | 208 |
| AlwI | GGATC | 2 cut(s) | 49, 62 |
| Ama87I | CYCGRG | 2 cut(s) | 500, 589 |
| AoxI | GGCC | 4 cut(s) | 168, 246, 435, 561 |
| ApaI | GGGCCC | 1 cut(s) | 439 |
| AspLEI | GCGC | 4 cut(s) | 359, 473, 710, 720 |
| AspS9I | GGNCC | 5 cut(s) | 352, 435, 436, 562, 683 |
| AsuHPI | GGTGA | 3 cut(s) | 319, 335, 635 |
| AvaI | CYCGRG | 2 cut(s) | 500, 589 |
| AvaII | GGWCC | 2 cut(s) | 352, 683 |
| BaeGI | GKGCMC | 2 cut(s) | 439, 586 |
| BalI | TGGCCA | 1 cut(s) | 170 |
| BamHI | GGATCC | 1 cut(s) | 54 |
| BanI | GGYRCC | 2 cut(s) | 505, 581 |
| BanII | GRGCYC | 1 cut(s) | 439 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 550, 582 |
| BciT130I | CCWGG | 5 cut(s) | 8, 29, 59, 295, 659 |
| BciVI | GTATCC | 1 cut(s) | 124 |
| BcoDI | GTCTC | 1 cut(s) | 208 |
| BfaI | CTAG | 1 cut(s) | 440 |
| BfmI | CTRYAG | 3 cut(s) | 141, 275, 667 |
| BfoI | RGCGCY | 1 cut(s) | 474 |
| BfuI | GTATCC | 1 cut(s) | 124 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 663 |
| BisI | GCNGC | 5 cut(s) | 249, 291, 360, 711, 721 |
| BlsI | GCNGC | 5 cut(s) | 250, 292, 361, 712, 722 |
| Bme1390I | CCNGG | 5 cut(s) | 8, 29, 59, 295, 659 |
| Bme18I | GGWCC | 2 cut(s) | 352, 683 |
| BmeT110I | CYCGRG | 2 cut(s) | 500, 589 |
| BmgBI | CACGTC | 1 cut(s) | 184 |
| BmgT120I | GGNCC | 5 cut(s) | 352, 435, 436, 562, 683 |
| BmiI | GGNNCC | 7 cut(s) | 56, 353, 436, 437, 507, 564, 583 |
| BmrFI | CCNGG | 5 cut(s) | 8, 29, 59, 295, 659 |
| BmrI | ACTGGG | 1 cut(s) | 625 |
| BmsI | GCATC | 5 cut(s) | 127, 136, 444, 500, 743 |
| BmuI | ACTGGG | 1 cut(s) | 625 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 593, 625, 595, 627 |
| BpmI | CTGGAG | 4 cut(s) | 29, 233, 254, 675 |
| BpuEI | CTTGAG | 1 cut(s) | 86 |
| Bsa29I | ATCGAT | 1 cut(s) | 267 |
| BsaBI | GATNNNNATC | 1 cut(s) | 269 |
| BsaHI | GRCGYC | 1 cut(s) | 14 |
| BsaJI | CCNNGG | 6 cut(s) | 27, 58, 151, 252, 501, 673 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 188, 218 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 124, 177, 235, 280, 502, 591, 661 |
| Bse118I | RCCGGY | 3 cut(s) | 508, 529, 616 |
| Bse1I | ACTGG | 2 cut(s) | 321, 631 |
| Bse8I | GATNNNNATC | 1 cut(s) | 269 |
| BseBI | CCWGG | 5 cut(s) | 8, 29, 59, 295, 659 |
| BseCI | ATCGAT | 1 cut(s) | 267 |
| BseDI | CCNNGG | 6 cut(s) | 27, 58, 151, 252, 501, 673 |
| BseGI | GGATG | 1 cut(s) | 491 |
| BseJI | GATNNNNATC | 1 cut(s) | 269 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 124, 177, 235, 280, 502, 591, 661 |
| BseMII | CTCAG | 3 cut(s) | 58, 329, 530 |
| BseNI | ACTGG | 2 cut(s) | 321, 631 |
| BseRI | GAGGAG | 1 cut(s) | 317 |
| BseSI | GKGCMC | 2 cut(s) | 439, 586 |
| BseYI | CCCAGC | 3 cut(s) | 431, 495, 752 |
| Bsh1236I | CGCG | 4 cut(s) | 357, 708, 718, 723 |
| Bsh1285I | CGRYCG | 1 cut(s) | 617 |
| BshFI | GGCC | 4 cut(s) | 170, 248, 437, 563 |
| BshNI | GGYRCC | 2 cut(s) | 505, 581 |
| BshVI | ATCGAT | 1 cut(s) | 267 |
| BsiEI | CGRYCG | 1 cut(s) | 617 |
| BsiHKCI | CYCGRG | 2 cut(s) | 500, 589 |
| BsiSI | CCGG | 3 cut(s) | 509, 530, 617 |
| BslFI | GGGAC | 4 cut(s) | 194, 211, 365, 527 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 124, 177, 235, 280, 502, 591, 661 |
| BsmAI | GTCTC | 1 cut(s) | 208 |
| BsmFI | GGGAC | 4 cut(s) | 194, 211, 365, 527 |
| BsmI | GAATGC | 1 cut(s) | 412 |
| BsnI | GGCC | 4 cut(s) | 170, 248, 437, 563 |
| BsoBI | CYCGRG | 2 cut(s) | 500, 589 |
| Bsp120I | GGGCCC | 1 cut(s) | 435 |
| Bsp1286I | GDGCHC | 2 cut(s) | 439, 586 |
| Bsp143I | GATC | 3 cut(s) | 54, 264, 694 |
| BspANI | GGCC | 4 cut(s) | 170, 248, 437, 563 |
| BspCNI | CTCAG | 3 cut(s) | 57, 330, 529 |
| BspDI | ATCGAT | 1 cut(s) | 267 |
| BspFNI | CGCG | 4 cut(s) | 357, 708, 718, 723 |
| BspLI | GGNNCC | 7 cut(s) | 56, 353, 436, 437, 507, 564, 583 |
| BspMAI | CTGCAG | 1 cut(s) | 279 |
| BspPI | GGATC | 2 cut(s) | 49, 62 |
| BspT107I | GGYRCC | 2 cut(s) | 505, 581 |
| BsrBI | CCGCTC | 2 cut(s) | 37, 588 |
| BsrFI | RCCGGY | 3 cut(s) | 508, 529, 616 |
| BsrI | ACTGG | 2 cut(s) | 321, 631 |
| BssAI | RCCGGY | 3 cut(s) | 508, 529, 616 |
| BssECI | CCNNGG | 6 cut(s) | 27, 58, 151, 252, 501, 673 |
| BssMI | GATC | 3 cut(s) | 54, 264, 694 |
| BssNI | GRCGYC | 1 cut(s) | 14 |
| BssT1I | CCWWGG | 1 cut(s) | 252 |
| Bst2UI | CCWGG | 5 cut(s) | 8, 29, 59, 295, 659 |
| Bst4CI | ACNGT | 1 cut(s) | 390 |
| Bst6I | CTCTTC | 1 cut(s) | 548 |
| BstACI | GRCGYC | 1 cut(s) | 14 |
| BstC8I | GCNNGC | 4 cut(s) | 334, 531, 586, 664 |
| BstDEI | CTNAG | 3 cut(s) | 44, 338, 516 |
| BstDSI | CCRYGG | 1 cut(s) | 151 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 122, 233 |
| BstF5I | GGATG | 1 cut(s) | 491 |
| BstFNI | CGCG | 4 cut(s) | 357, 708, 718, 723 |
| BstH2I | RGCGCY | 1 cut(s) | 474 |
| BstHHI | GCGC | 4 cut(s) | 359, 473, 710, 720 |
| BstKTI | GATC | 3 cut(s) | 57, 267, 697 |
| BstMAI | GTCTC | 1 cut(s) | 208 |
| BstMBI | GATC | 3 cut(s) | 54, 264, 694 |
| BstMCI | CGRYCG | 1 cut(s) | 617 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 146, 365, 505, 663, 705, 740, 749 |
| BstNI | CCWGG | 5 cut(s) | 8, 29, 59, 295, 659 |
| BstNSI | RCATGY | 2 cut(s) | 226, 646 |
| BstSCI | CCNGG | 5 cut(s) | 6, 27, 57, 293, 657 |
| BstSFI | CTRYAG | 3 cut(s) | 141, 275, 667 |
| BstSLI | GKGCMC | 2 cut(s) | 439, 586 |
| BstUI | CGCG | 4 cut(s) | 357, 708, 718, 723 |
| BstX2I | RGATCY | 1 cut(s) | 54 |
| BstYI | RGATCY | 1 cut(s) | 54 |
| Bsu15I | ATCGAT | 1 cut(s) | 267 |
| BsuI | GTATCC | 1 cut(s) | 124 |
| BsuRI | GGCC | 4 cut(s) | 170, 248, 437, 563 |
| BsuTUI | ATCGAT | 1 cut(s) | 267 |
| BtgI | CCRYGG | 1 cut(s) | 151 |
| BtgZI | GCGATG | 1 cut(s) | 425 |
| BtrI | CACGTC | 1 cut(s) | 184 |
| BtsCI | GGATG | 1 cut(s) | 491 |
| BtsI | GCAGTG | 1 cut(s) | 284 |
| BtsIMutI | CAGTG | 2 cut(s) | 284, 638 |
| Cac8I | GCNNGC | 4 cut(s) | 334, 531, 586, 664 |
| CfoI | GCGC | 4 cut(s) | 359, 473, 710, 720 |
| Cfr10I | RCCGGY | 3 cut(s) | 508, 529, 616 |
| Cfr13I | GGNCC | 5 cut(s) | 352, 435, 436, 562, 683 |
| ClaI | ATCGAT | 1 cut(s) | 267 |
| CseI | GACGC | 3 cut(s) | 3, 712, 714 |
| CviAII | CATG | 3 cut(s) | 200, 223, 643 |
| DdeI | CTNAG | 3 cut(s) | 44, 338, 516 |
| DpnI | GATC | 3 cut(s) | 56, 266, 696 |
| DpnII | GATC | 3 cut(s) | 54, 264, 694 |
| EaeI | YGGCCR | 2 cut(s) | 168, 246 |
| Eam1104I | CTCTTC | 1 cut(s) | 548 |
| EarI | CTCTTC | 1 cut(s) | 548 |
| EciI | GGCGGA | 3 cut(s) | 95, 143, 410 |
| Eco130I | CCWWGG | 1 cut(s) | 252 |
| Eco24I | GRGCYC | 1 cut(s) | 439 |
| Eco32I | GATATC | 1 cut(s) | 271 |
| Eco47I | GGWCC | 2 cut(s) | 352, 683 |
| Eco57I | CTGAAG | 1 cut(s) | 366 |
| Eco88I | CYCGRG | 2 cut(s) | 500, 589 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 122, 233 |
| EcoO109I | RGGNCCY | 2 cut(s) | 435, 436 |
| EcoRII | CCWGG | 5 cut(s) | 6, 27, 57, 293, 657 |
| EcoRV | GATATC | 1 cut(s) | 271 |
| EcoT14I | CCWWGG | 1 cut(s) | 252 |
| EcoT38I | GRGCYC | 1 cut(s) | 439 |
| ErhI | CCWWGG | 1 cut(s) | 252 |
| FaeI | CATG | 3 cut(s) | 203, 226, 646 |
| FaiI | YATR | 4 cut(s) | 201, 224, 560, 644 |
| FaqI | GGGAC | 4 cut(s) | 194, 211, 365, 527 |
| FatI | CATG | 3 cut(s) | 199, 222, 642 |
| FauI | CCCGC | 7 cut(s) | 30, 171, 534, 552, 593, 613, 655 |
| Fnu4HI | GCNGC | 5 cut(s) | 249, 291, 360, 711, 721 |
| FokI | GGATG | 1 cut(s) | 478 |
| FriOI | GRGCYC | 1 cut(s) | 439 |
| Fsp4HI | GCNGC | 5 cut(s) | 249, 291, 360, 711, 721 |
| FspBI | CTAG | 1 cut(s) | 440 |
| GlaI | GCGC | 4 cut(s) | 358, 472, 709, 719 |
| GluI | GCNGC | 5 cut(s) | 249, 291, 360, 711, 721 |
| GsaI | CCCAGC | 3 cut(s) | 435, 499, 756 |
| GsuI | CTGGAG | 4 cut(s) | 29, 233, 254, 675 |
| HaeII | RGCGCY | 1 cut(s) | 474 |
| HaeIII | GGCC | 4 cut(s) | 170, 248, 437, 563 |
| HapII | CCGG | 3 cut(s) | 509, 530, 617 |
| HgaI | GACGC | 3 cut(s) | 3, 712, 714 |
| HhaI | GCGC | 4 cut(s) | 359, 473, 710, 720 |
| Hin1I | GRCGYC | 1 cut(s) | 14 |
| Hin1II | CATG | 3 cut(s) | 203, 226, 646 |
| Hin6I | GCGC | 4 cut(s) | 357, 471, 708, 718 |
| HinP1I | GCGC | 4 cut(s) | 357, 471, 708, 718 |
| HinfI | GANTC | 2 cut(s) | 284, 626 |
| HpaII | CCGG | 3 cut(s) | 509, 530, 617 |
| HphI | GGTGA | 3 cut(s) | 319, 335, 635 |
| Hpy188I | TCNGA | 3 cut(s) | 519, 739, 748 |
| Hpy188III | TCNNGA | 4 cut(s) | 65, 612, 692, 727 |
| Hpy99I | CGWCG | 2 cut(s) | 553, 708 |
| HpyAV | CCTTC | 6 cut(s) | 314, 341, 421, 460, 572, 576 |
| HpyCH4III | ACNGT | 1 cut(s) | 390 |
| HpyCH4IV | ACGT | 1 cut(s) | 183 |
| HpyCH4V | TGCA | 1 cut(s) | 277 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 146, 365, 505, 663, 705, 740, 749 |
| HpyF3I | CTNAG | 3 cut(s) | 44, 338, 516 |
| HpySE526I | ACGT | 1 cut(s) | 183 |
| Hsp92I | GRCGYC | 1 cut(s) | 14 |
| Hsp92II | CATG | 3 cut(s) | 203, 226, 646 |
| HspAI | GCGC | 4 cut(s) | 357, 471, 708, 718 |
| KroI | GCCGGC | 1 cut(s) | 529 |
| KroNI | GCCGGC | 1 cut(s) | 531 |
| Kzo9I | GATC | 3 cut(s) | 54, 264, 694 |
| LmnI | GCTCC | 1 cut(s) | 214 |
| LweI | GCATC | 5 cut(s) | 127, 136, 444, 500, 743 |
| MaeI | CTAG | 1 cut(s) | 440 |
| MaeII | ACGT | 1 cut(s) | 183 |
| MaeIII | GTNAC | 1 cut(s) | 623 |
| MalI | GATC | 3 cut(s) | 56, 266, 696 |
| MbiI | CCGCTC | 2 cut(s) | 37, 588 |
| MboI | GATC | 3 cut(s) | 54, 264, 694 |
| MboII | GAAGA | 3 cut(s) | 322, 547, 565 |
| MflI | RGATCY | 1 cut(s) | 54 |
| MhlI | GDGCHC | 2 cut(s) | 439, 586 |
| MlsI | TGGCCA | 1 cut(s) | 170 |
| MluNI | TGGCCA | 1 cut(s) | 170 |
| MlyI | GAGTC | 2 cut(s) | 293, 620 |
| MmeI | TCCRAC | 1 cut(s) | 661 |
| Mox20I | TGGCCA | 1 cut(s) | 170 |
| MreI | CGCCGGCG | 1 cut(s) | 529 |
| MroNI | GCCGGC | 1 cut(s) | 529 |
| MscI | TGGCCA | 1 cut(s) | 170 |
| MseI | TTAA | 1 cut(s) | 486 |
| Msp20I | TGGCCA | 1 cut(s) | 170 |
| MspA1I | CMGCKG | 2 cut(s) | 178, 368 |
| MspI | CCGG | 3 cut(s) | 509, 530, 617 |
| MspR9I | CCNGG | 5 cut(s) | 8, 29, 59, 295, 659 |
| Mva1269I | GAATGC | 1 cut(s) | 412 |
| MvaI | CCWGG | 5 cut(s) | 8, 29, 59, 295, 659 |
| MvnI | CGCG | 4 cut(s) | 357, 708, 718, 723 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 146, 365, 505, 663, 705, 740, 749 |
| NaeI | GCCGGC | 1 cut(s) | 531 |
| NdeII | GATC | 3 cut(s) | 54, 264, 694 |
| NgoMIV | GCCGGC | 1 cut(s) | 529 |
| NlaIII | CATG | 3 cut(s) | 203, 226, 646 |
| NlaIV | GGNNCC | 7 cut(s) | 56, 353, 436, 437, 507, 564, 583 |
| NmeAIII | GCCGAG | 1 cut(s) | 654 |
| NmuCI | GTSAC | 1 cut(s) | 623 |
| NspI | RCATGY | 2 cut(s) | 226, 646 |
| PctI | GAATGC | 1 cut(s) | 412 |
| PdiI | GCCGGC | 1 cut(s) | 531 |
| PflFI | GACNNNGTC | 1 cut(s) | 200 |
| PfoI | TCCNGGA | 1 cut(s) | 6 |
| PkrI | GCNGC | 5 cut(s) | 250, 292, 361, 712, 722 |
| PleI | GAGTC | 2 cut(s) | 292, 620 |
| PpsI | GAGTC | 2 cut(s) | 292, 620 |
| Psp6I | CCWGG | 5 cut(s) | 6, 27, 57, 293, 657 |
| PspFI | CCCAGC | 3 cut(s) | 431, 495, 752 |
| PspGI | CCWGG | 5 cut(s) | 6, 27, 57, 293, 657 |
| PspN4I | GGNNCC | 7 cut(s) | 56, 353, 436, 437, 507, 564, 583 |
| PspOMI | GGGCCC | 1 cut(s) | 435 |
| PspPI | GGNCC | 5 cut(s) | 352, 435, 436, 562, 683 |
| PstI | CTGCAG | 1 cut(s) | 279 |
| PsuI | RGATCY | 1 cut(s) | 54 |
| PsyI | GACNNNGTC | 1 cut(s) | 200 |
| SaqAI | TTAA | 1 cut(s) | 486 |
| SatI | GCNGC | 5 cut(s) | 249, 291, 360, 711, 721 |
| Sau3AI | GATC | 3 cut(s) | 54, 264, 694 |
| Sau96I | GGNCC | 5 cut(s) | 352, 435, 436, 562, 683 |
| SchI | GAGTC | 2 cut(s) | 293, 620 |
| ScrFI | CCNGG | 5 cut(s) | 8, 29, 59, 295, 659 |
| SduI | GDGCHC | 2 cut(s) | 439, 586 |
| SfaNI | GCATC | 5 cut(s) | 127, 136, 444, 500, 743 |
| SfcI | CTRYAG | 3 cut(s) | 141, 275, 667 |
| SgrAI | CRCCGGYG | 1 cut(s) | 529 |
| SinI | GGWCC | 2 cut(s) | 352, 683 |
| SmlI | CTYRAG | 1 cut(s) | 65 |
| SmoI | CTYRAG | 1 cut(s) | 65 |
| SspMI | CTAG | 1 cut(s) | 440 |
| StyD4I | CCNGG | 5 cut(s) | 6, 27, 57, 293, 657 |
| StyI | CCWWGG | 1 cut(s) | 252 |
| TaaI | ACNGT | 1 cut(s) | 390 |
| TaiI | ACGT | 1 cut(s) | 186 |
| TaqI | TCGA | 2 cut(s) | 267, 613 |
| TauI | GCSGC | 5 cut(s) | 251, 293, 362, 713, 723 |
| Tru1I | TTAA | 1 cut(s) | 486 |
| Tru9I | TTAA | 1 cut(s) | 486 |
| TscAI | CASTG | 2 cut(s) | 284, 638 |
| TseFI | GTSAC | 1 cut(s) | 623 |
| Tsp45I | GTSAC | 1 cut(s) | 623 |
| TspDTI | ATGAA | 1 cut(s) | 428 |
| TspRI | CASTG | 2 cut(s) | 284, 638 |
| Tth111I | GACNNNGTC | 1 cut(s) | 200 |
| VpaK11BI | GGWCC | 2 cut(s) | 352, 683 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 122, 233 |
| XceI | RCATGY | 2 cut(s) | 226, 646 |
| XspI | CTAG | 1 cut(s) | 440 |