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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 102 |
| AccB1I | GGYRCC | 3 cut(s) | 59, 163, 233 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 94 |
| AccBSI | CCGCTC | 4 cut(s) | 436, 463, 601, 754 |
| AccII | CGCG | 2 cut(s) | 275, 707 |
| AclWI | GGATC | 2 cut(s) | 187, 829 |
| AcoI | YGGCCR | 3 cut(s) | 360, 504, 813 |
| AcuI | CTGAAG | 2 cut(s) | 818, 824 |
| AcyI | GRCGYC | 2 cut(s) | 164, 262 |
| AfaI | GTAC | 1 cut(s) | 378 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 94, 141, 209, 369, 688, 799 |
| AflIII | ACRYGT | 1 cut(s) | 453 |
| AjiI | CACGTC | 1 cut(s) | 766 |
| AjnI | CCWGG | 5 cut(s) | 87, 229, 492, 570, 714 |
| AleI | CACNNNNGTG | 1 cut(s) | 456 |
| AluBI | AGCT | 6 cut(s) | 528, 607, 619, 640, 724, 844 |
| AluI | AGCT | 6 cut(s) | 528, 607, 619, 640, 724, 844 |
| Alw21I | GWGCWC | 1 cut(s) | 621 |
| Alw26I | GTCTC | 3 cut(s) | 296, 632, 738 |
| AlwI | GGATC | 2 cut(s) | 187, 829 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 682 |
| Ama87I | CYCGRG | 1 cut(s) | 591 |
| AoxI | GGCC | 8 cut(s) | 90, 143, 225, 330, 339, 360, 504, 813 |
| ApaI | GGGCCC | 1 cut(s) | 147 |
| ApeKI | GCWGC | 7 cut(s) | 98, 290, 404, 575, 586, 604, 676 |
| AspLEI | GCGC | 3 cut(s) | 103, 166, 681 |
| AspS9I | GGNCC | 6 cut(s) | 143, 144, 226, 313, 340, 490 |
| AsuC2I | CCSGG | 3 cut(s) | 241, 592, 593 |
| AsuHPI | GGTGA | 1 cut(s) | 398 |
| AvaI | CYCGRG | 1 cut(s) | 591 |
| AvaII | GGWCC | 2 cut(s) | 313, 490 |
| BaeGI | GKGCMC | 2 cut(s) | 129, 147 |
| BanI | GGYRCC | 3 cut(s) | 59, 163, 233 |
| BanII | GRGCYC | 3 cut(s) | 147, 558, 621 |
| Bbv12I | GWGCWC | 1 cut(s) | 621 |
| BbvCI | CCTCAGC | 2 cut(s) | 608, 641 |
| BbvI | GCAGC | 7 cut(s) | 85, 302, 391, 587, 598, 616, 688 |
| BccI | CCATC | 4 cut(s) | 23, 24, 769, 797 |
| BceAI | ACGGC | 2 cut(s) | 77, 519 |
| BciT130I | CCWGG | 5 cut(s) | 89, 231, 494, 572, 716 |
| BciVI | GTATCC | 1 cut(s) | 799 |
| BclI | TGATCA | 1 cut(s) | 511 |
| BcnI | CCSGG | 3 cut(s) | 241, 592, 593 |
| BcoDI | GTCTC | 3 cut(s) | 296, 632, 738 |
| BfaI | CTAG | 2 cut(s) | 197, 651 |
| BfmI | CTRYAG | 1 cut(s) | 523 |
| BfoI | RGCGCY | 2 cut(s) | 167, 682 |
| BfuI | GTATCC | 1 cut(s) | 799 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 338 |
| BglII | AGATCT | 1 cut(s) | 878 |
| Bme1390I | CCNGG | 8 cut(s) | 89, 231, 241, 494, 572, 592, 593, 716 |
| Bme18I | GGWCC | 2 cut(s) | 313, 490 |
| BmeT110I | CYCGRG | 1 cut(s) | 591 |
| BmgBI | CACGTC | 1 cut(s) | 766 |
| BmgT120I | GGNCC | 6 cut(s) | 143, 144, 226, 313, 340, 490 |
| BmrFI | CCNGG | 8 cut(s) | 89, 231, 241, 494, 572, 592, 593, 716 |
| BmsI | GCATC | 3 cut(s) | 550, 691, 700 |
| BpmI | CTGGAG | 3 cut(s) | 503, 614, 848 |
| Bpu10I | CCTNAGC | 2 cut(s) | 608, 641 |
| BpuEI | CTTGAG | 1 cut(s) | 770 |
| BpuMI | CCSGG | 3 cut(s) | 241, 592, 593 |
| BsaHI | GRCGYC | 2 cut(s) | 164, 262 |
| BsaI | GGTCTC | 2 cut(s) | 632, 738 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 360, 390 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 94, 141, 209, 369, 688, 799 |
| Bse1I | ACTGG | 1 cut(s) | 179 |
| BseBI | CCWGG | 5 cut(s) | 89, 231, 494, 572, 716 |
| BseGI | GGATG | 4 cut(s) | 619, 673, 715, 808 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 94, 141, 209, 369, 688, 799 |
| BseMII | CTCAG | 3 cut(s) | 34, 599, 632 |
| BseNI | ACTGG | 1 cut(s) | 179 |
| BseRI | GAGGAG | 1 cut(s) | 671 |
| BseSI | GKGCMC | 2 cut(s) | 129, 147 |
| BseXI | GCAGC | 7 cut(s) | 85, 302, 391, 587, 598, 616, 688 |
| BseYI | CCCAGC | 1 cut(s) | 466 |
| BsgI | GTGCAG | 2 cut(s) | 65, 269 |
| Bsh1236I | CGCG | 2 cut(s) | 275, 707 |
| BshFI | GGCC | 8 cut(s) | 92, 145, 227, 332, 341, 362, 506, 815 |
| BshNI | GGYRCC | 3 cut(s) | 59, 163, 233 |
| BsiHKAI | GWGCWC | 1 cut(s) | 621 |
| BsiHKCI | CYCGRG | 1 cut(s) | 591 |
| BsiSI | CCGG | 3 cut(s) | 241, 366, 592 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 94, 141, 209, 369, 688, 799 |
| BsmAI | GTCTC | 3 cut(s) | 296, 632, 738 |
| BsmI | GAATGC | 1 cut(s) | 763 |
| BsnI | GGCC | 8 cut(s) | 92, 145, 227, 332, 341, 362, 506, 815 |
| Bso31I | GGTCTC | 2 cut(s) | 632, 738 |
| BsoBI | CYCGRG | 1 cut(s) | 591 |
| Bsp120I | GGGCCC | 1 cut(s) | 143 |
| Bsp1286I | GDGCHC | 4 cut(s) | 129, 147, 558, 621 |
| Bsp1407I | TGTACA | 1 cut(s) | 376 |
| Bsp143I | GATC | 5 cut(s) | 192, 388, 511, 834, 878 |
| BspANI | GGCC | 8 cut(s) | 92, 145, 227, 332, 341, 362, 506, 815 |
| BspCNI | CTCAG | 3 cut(s) | 33, 600, 633 |
| BspFNI | CGCG | 2 cut(s) | 275, 707 |
| BspPI | GGATC | 2 cut(s) | 187, 829 |
| BspT107I | GGYRCC | 3 cut(s) | 59, 163, 233 |
| BspTNI | GGTCTC | 2 cut(s) | 632, 738 |
| BsrBI | CCGCTC | 4 cut(s) | 436, 463, 601, 754 |
| BsrGI | TGTACA | 1 cut(s) | 376 |
| BsrI | ACTGG | 1 cut(s) | 179 |
| BssMI | GATC | 5 cut(s) | 192, 388, 511, 834, 878 |
| BssNI | GRCGYC | 2 cut(s) | 164, 262 |
| BssT1I | CCWWGG | 3 cut(s) | 622, 687, 816 |
| Bst2UI | CCWGG | 5 cut(s) | 89, 231, 494, 572, 716 |
| Bst4CI | ACNGT | 3 cut(s) | 187, 247, 358 |
| Bst6I | CTCTTC | 1 cut(s) | 251 |
| BstACI | GRCGYC | 2 cut(s) | 164, 262 |
| BstAUI | TGTACA | 1 cut(s) | 376 |
| BstC8I | GCNNGC | 5 cut(s) | 39, 48, 79, 129, 726 |
| BstDEI | CTNAG | 3 cut(s) | 20, 608, 641 |
| BstDSI | CCRYGG | 2 cut(s) | 93, 705 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 686, 797 |
| BstF5I | GGATG | 4 cut(s) | 619, 673, 715, 808 |
| BstFNI | CGCG | 2 cut(s) | 275, 707 |
| BstH2I | RGCGCY | 2 cut(s) | 167, 682 |
| BstHHI | GCGC | 3 cut(s) | 103, 166, 681 |
| BstKTI | GATC | 5 cut(s) | 195, 391, 514, 837, 881 |
| BstMAI | GTCTC | 3 cut(s) | 296, 632, 738 |
| BstMBI | GATC | 5 cut(s) | 192, 388, 511, 834, 878 |
| BstNI | CCWGG | 5 cut(s) | 89, 231, 494, 572, 716 |
| BstNSI | RCATGY | 1 cut(s) | 457 |
| BstSCI | CCNGG | 8 cut(s) | 87, 229, 239, 492, 570, 590, 591, 714 |
| BstSFI | CTRYAG | 1 cut(s) | 523 |
| BstSLI | GKGCMC | 2 cut(s) | 129, 147 |
| BstUI | CGCG | 2 cut(s) | 275, 707 |
| BstV1I | GCAGC | 7 cut(s) | 85, 302, 391, 587, 598, 616, 688 |
| BstX2I | RGATCY | 2 cut(s) | 834, 878 |
| BstYI | RGATCY | 2 cut(s) | 834, 878 |
| BsuI | GTATCC | 1 cut(s) | 799 |
| BsuRI | GGCC | 8 cut(s) | 92, 145, 227, 332, 341, 362, 506, 815 |
| BtgI | CCRYGG | 2 cut(s) | 93, 705 |
| BtrI | CACGTC | 1 cut(s) | 766 |
| BtsCI | GGATG | 4 cut(s) | 619, 673, 715, 808 |
| BtsI | GCAGTG | 1 cut(s) | 48 |
| BtsIMutI | CAGTG | 4 cut(s) | 28, 48, 186, 363 |
| Cac8I | GCNNGC | 5 cut(s) | 39, 48, 79, 129, 726 |
| CaiI | CAGNNNCTG | 1 cut(s) | 682 |
| CfoI | GCGC | 3 cut(s) | 103, 166, 681 |
| Cfr13I | GGNCC | 6 cut(s) | 143, 144, 226, 313, 340, 490 |
| Cfr42I | CCGCGG | 1 cut(s) | 708 |
| Cfr9I | CCCGGG | 1 cut(s) | 591 |
| CseI | GACGC | 2 cut(s) | 251, 281 |
| Csp6I | GTAC | 1 cut(s) | 377 |
| CviAII | CATG | 3 cut(s) | 431, 454, 560 |
| CviQI | GTAC | 1 cut(s) | 377 |
| DdeI | CTNAG | 3 cut(s) | 20, 608, 641 |
| DinI | GGCGCC | 1 cut(s) | 165 |
| DpnI | GATC | 5 cut(s) | 194, 390, 513, 836, 880 |
| DpnII | GATC | 5 cut(s) | 192, 388, 511, 834, 878 |
| EaeI | YGGCCR | 3 cut(s) | 360, 504, 813 |
| Eam1104I | CTCTTC | 1 cut(s) | 251 |
| EarI | CTCTTC | 1 cut(s) | 251 |
| EciI | GGCGGA | 2 cut(s) | 305, 314 |
| Ecl136II | GAGCTC | 1 cut(s) | 619 |
| Eco130I | CCWWGG | 3 cut(s) | 622, 687, 816 |
| Eco24I | GRGCYC | 3 cut(s) | 147, 558, 621 |
| Eco31I | GGTCTC | 2 cut(s) | 632, 738 |
| Eco47I | GGWCC | 2 cut(s) | 313, 490 |
| Eco53kI | GAGCTC | 1 cut(s) | 619 |
| Eco57I | CTGAAG | 2 cut(s) | 818, 824 |
| Eco88I | CYCGRG | 1 cut(s) | 591 |
| EcoICRI | GAGCTC | 1 cut(s) | 619 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 686, 797 |
| EcoO109I | RGGNCCY | 1 cut(s) | 340 |
| EcoRII | CCWGG | 5 cut(s) | 87, 229, 492, 570, 714 |
| EcoT14I | CCWWGG | 3 cut(s) | 622, 687, 816 |
| EcoT38I | GRGCYC | 3 cut(s) | 147, 558, 621 |
| EgeI | GGCGCC | 1 cut(s) | 165 |
| EheI | GGCGCC | 1 cut(s) | 165 |
| ErhI | CCWWGG | 3 cut(s) | 622, 687, 816 |
| FaeI | CATG | 3 cut(s) | 434, 457, 563 |
| FaiI | YATR | 8 cut(s) | 74, 149, 411, 432, 455, 525, 561, 886 |
| FatI | CATG | 3 cut(s) | 430, 453, 559 |
| FauI | CCCGC | 4 cut(s) | 43, 136, 376, 429 |
| FbaI | TGATCA | 1 cut(s) | 511 |
| FokI | GGATG | 4 cut(s) | 626, 680, 722, 815 |
| FriOI | GRGCYC | 3 cut(s) | 147, 558, 621 |
| FspBI | CTAG | 2 cut(s) | 197, 651 |
| FspI | TGCGCA | 1 cut(s) | 102 |
| GlaI | GCGC | 3 cut(s) | 102, 165, 680 |
| GsaI | CCCAGC | 1 cut(s) | 470 |
| GsuI | CTGGAG | 3 cut(s) | 503, 614, 848 |
| HaeII | RGCGCY | 2 cut(s) | 167, 682 |
| HaeIII | GGCC | 8 cut(s) | 92, 145, 227, 332, 341, 362, 506, 815 |
| HapII | CCGG | 3 cut(s) | 241, 366, 592 |
| HgaI | GACGC | 2 cut(s) | 251, 281 |
| HhaI | GCGC | 3 cut(s) | 103, 166, 681 |
| Hin1I | GRCGYC | 2 cut(s) | 164, 262 |
| Hin1II | CATG | 3 cut(s) | 434, 457, 563 |
| Hin6I | GCGC | 3 cut(s) | 101, 164, 679 |
| HinP1I | GCGC | 3 cut(s) | 101, 164, 679 |
| HincII | GTYRAC | 1 cut(s) | 501 |
| HindII | GTYRAC | 1 cut(s) | 501 |
| HinfI | GANTC | 2 cut(s) | 109, 395 |
| HpaII | CCGG | 3 cut(s) | 241, 366, 592 |
| HphI | GGTGA | 1 cut(s) | 398 |
| Hpy166II | GTNNAC | 1 cut(s) | 501 |
| Hpy188I | TCNGA | 2 cut(s) | 114, 855 |
| Hpy188III | TCNNGA | 5 cut(s) | 392, 482, 631, 832, 865 |
| Hpy8I | GTNNAC | 1 cut(s) | 501 |
| Hpy99I | CGWCG | 2 cut(s) | 141, 770 |
| HpyAV | CCTTC | 6 cut(s) | 109, 322, 544, 793, 820, 848 |
| HpyCH4III | ACNGT | 3 cut(s) | 187, 247, 358 |
| HpyCH4IV | ACGT | 2 cut(s) | 765, 786 |
| HpyCH4V | TGCA | 2 cut(s) | 46, 250 |
| HpyF3I | CTNAG | 3 cut(s) | 20, 608, 641 |
| HpySE526I | ACGT | 2 cut(s) | 765, 786 |
| Hsp92I | GRCGYC | 2 cut(s) | 164, 262 |
| Hsp92II | CATG | 3 cut(s) | 434, 457, 563 |
| HspAI | GCGC | 3 cut(s) | 101, 164, 679 |
| KasI | GGCGCC | 1 cut(s) | 163 |
| Ksp22I | TGATCA | 1 cut(s) | 511 |
| KspI | CCGCGG | 1 cut(s) | 708 |
| Kzo9I | GATC | 5 cut(s) | 192, 388, 511, 834, 878 |
| LmnI | GCTCC | 6 cut(s) | 84, 561, 624, 637, 778, 849 |
| Lsp1109I | GCAGC | 7 cut(s) | 85, 302, 391, 587, 598, 616, 688 |
| LweI | GCATC | 3 cut(s) | 550, 691, 700 |
| MaeI | CTAG | 2 cut(s) | 197, 651 |
| MaeII | ACGT | 2 cut(s) | 765, 786 |
| MaeIII | GTNAC | 2 cut(s) | 181, 352 |
| MalI | GATC | 5 cut(s) | 194, 390, 513, 836, 880 |
| MbiI | CCGCTC | 4 cut(s) | 436, 463, 601, 754 |
| MboI | GATC | 5 cut(s) | 192, 388, 511, 834, 878 |
| MboII | GAAGA | 4 cut(s) | 80, 265, 268, 337 |
| MflI | RGATCY | 2 cut(s) | 834, 878 |
| MhlI | GDGCHC | 4 cut(s) | 129, 147, 558, 621 |
| Mly113I | GGCGCC | 1 cut(s) | 164 |
| MslI | CAYNNNNRTG | 2 cut(s) | 21, 456 |
| MspA1I | CMGCKG | 2 cut(s) | 607, 707 |
| MspI | CCGG | 3 cut(s) | 241, 366, 592 |
| MspR9I | CCNGG | 8 cut(s) | 89, 231, 241, 494, 572, 592, 593, 716 |
| Mva1269I | GAATGC | 1 cut(s) | 763 |
| MvaI | CCWGG | 5 cut(s) | 89, 231, 494, 572, 716 |
| MvnI | CGCG | 2 cut(s) | 275, 707 |
| NarI | GGCGCC | 1 cut(s) | 164 |
| NciI | CCSGG | 3 cut(s) | 241, 592, 593 |
| NdeII | GATC | 5 cut(s) | 192, 388, 511, 834, 878 |
| NlaIII | CATG | 3 cut(s) | 434, 457, 563 |
| NmeAIII | GCCGAG | 2 cut(s) | 319, 439 |
| NmuCI | GTSAC | 1 cut(s) | 181 |
| NsbI | TGCGCA | 1 cut(s) | 102 |
| NspI | RCATGY | 1 cut(s) | 457 |
| OliI | CACNNNNGTG | 1 cut(s) | 456 |
| PasI | CCCWGGG | 1 cut(s) | 715 |
| PciI | ACATGT | 1 cut(s) | 453 |
| PctI | GAATGC | 1 cut(s) | 763 |
| PfeI | GAWTC | 2 cut(s) | 109, 395 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 94 |
| PluTI | GGCGCC | 1 cut(s) | 167 |
| PscI | ACATGT | 1 cut(s) | 453 |
| Psp124BI | GAGCTC | 1 cut(s) | 621 |
| Psp6I | CCWGG | 5 cut(s) | 87, 229, 492, 570, 714 |
| PspFI | CCCAGC | 1 cut(s) | 466 |
| PspGI | CCWGG | 5 cut(s) | 87, 229, 492, 570, 714 |
| PspOMI | GGGCCC | 1 cut(s) | 143 |
| PspPI | GGNCC | 6 cut(s) | 143, 144, 226, 313, 340, 490 |
| PstNI | CAGNNNCTG | 1 cut(s) | 682 |
| PsuI | RGATCY | 2 cut(s) | 834, 878 |
| PvuII | CAGCTG | 1 cut(s) | 607 |
| RsaI | GTAC | 1 cut(s) | 378 |
| RsaNI | GTAC | 1 cut(s) | 377 |
| RseI | CAYNNNNRTG | 2 cut(s) | 21, 456 |
| SacI | GAGCTC | 1 cut(s) | 621 |
| SacII | CCGCGG | 1 cut(s) | 708 |
| Sau3AI | GATC | 5 cut(s) | 192, 388, 511, 834, 878 |
| Sau96I | GGNCC | 6 cut(s) | 143, 144, 226, 313, 340, 490 |
| ScrFI | CCNGG | 8 cut(s) | 89, 231, 241, 494, 572, 592, 593, 716 |
| SduI | GDGCHC | 4 cut(s) | 129, 147, 558, 621 |
| SfaNI | GCATC | 3 cut(s) | 550, 691, 700 |
| SfcI | CTRYAG | 1 cut(s) | 523 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 338 |
| SfoI | GGCGCC | 1 cut(s) | 165 |
| Sfr303I | CCGCGG | 1 cut(s) | 708 |
| SgrBI | CCGCGG | 1 cut(s) | 708 |
| SinI | GGWCC | 2 cut(s) | 313, 490 |
| SmaI | CCCGGG | 1 cut(s) | 593 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 21, 456 |
| SmlI | CTYRAG | 1 cut(s) | 749 |
| SmoI | CTYRAG | 1 cut(s) | 749 |
| SspDI | GGCGCC | 1 cut(s) | 163 |
| SspMI | CTAG | 2 cut(s) | 197, 651 |
| SstI | GAGCTC | 1 cut(s) | 621 |
| StyD4I | CCNGG | 8 cut(s) | 87, 229, 239, 492, 570, 590, 591, 714 |
| StyI | CCWWGG | 3 cut(s) | 622, 687, 816 |
| TaaI | ACNGT | 3 cut(s) | 187, 247, 358 |
| TaiI | ACGT | 2 cut(s) | 768, 789 |
| TaqI | TCGA | 4 cut(s) | 107, 170, 530, 831 |
| TatI | WGTACW | 1 cut(s) | 376 |
| TauI | GCSGC | 8 cut(s) | 7, 65, 205, 365, 466, 604, 707, 815 |
| TfiI | GAWTC | 2 cut(s) | 109, 395 |
| TscAI | CASTG | 4 cut(s) | 28, 48, 186, 363 |
| TseFI | GTSAC | 1 cut(s) | 181 |
| TseI | GCWGC | 7 cut(s) | 98, 290, 404, 575, 586, 604, 676 |
| Tsp45I | GTSAC | 1 cut(s) | 181 |
| TspDTI | ATGAA | 1 cut(s) | 433 |
| TspGWI | ACGGA | 1 cut(s) | 538 |
| TspMI | CCCGGG | 1 cut(s) | 591 |
| TspRI | CASTG | 4 cut(s) | 28, 48, 186, 363 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 94 |
| VpaK11BI | GGWCC | 2 cut(s) | 313, 490 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 686, 797 |
| XceI | RCATGY | 1 cut(s) | 457 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 355 |
| XmaI | CCCGGG | 1 cut(s) | 591 |
| XspI | CTAG | 2 cut(s) | 197, 651 |