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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 151, 322 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 606 |
| AccBSI | CCGCTC | 2 cut(s) | 547, 619 |
| AccI | GTMKAC | 1 cut(s) | 456 |
| AccII | CGCG | 1 cut(s) | 329 |
| AclWI | GGATC | 1 cut(s) | 694 |
| AcoI | YGGCCR | 3 cut(s) | 570, 591, 675 |
| AcuI | CTGAAG | 2 cut(s) | 454, 689 |
| AfaI | GTAC | 2 cut(s) | 356, 441 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 55, 186, 187, 217, 606, 709, 790 |
| AflIII | ACRYGT | 1 cut(s) | 309 |
| AgsI | TTSAA | 2 cut(s) | 529, 814 |
| AjiI | CACGTC | 2 cut(s) | 256, 310 |
| AjnI | CCWGG | 3 cut(s) | 612, 722, 765 |
| AluBI | AGCT | 4 cut(s) | 299, 412, 553, 640 |
| AluI | AGCT | 4 cut(s) | 299, 412, 553, 640 |
| Alw21I | GWGCWC | 2 cut(s) | 195, 555 |
| Alw26I | GTCTC | 1 cut(s) | 26 |
| Alw44I | GTGCAC | 1 cut(s) | 191 |
| AlwI | GGATC | 1 cut(s) | 694 |
| Ama87I | CYCGRG | 2 cut(s) | 413, 537 |
| AoxI | GGCC | 5 cut(s) | 219, 570, 591, 675, 763 |
| ApaLI | GTGCAC | 1 cut(s) | 191 |
| ApeKI | GCWGC | 5 cut(s) | 109, 409, 661, 719, 758 |
| AspLEI | GCGC | 4 cut(s) | 43, 172, 186, 210 |
| AspS9I | GGNCC | 1 cut(s) | 610 |
| AsuC2I | CCSGG | 3 cut(s) | 29, 181, 785 |
| AsuHPI | GGTGA | 8 cut(s) | 113, 146, 169, 217, 263, 389, 577, 764 |
| AvaI | CYCGRG | 2 cut(s) | 413, 537 |
| AvaII | GGWCC | 1 cut(s) | 610 |
| BaeGI | GKGCMC | 2 cut(s) | 195, 327 |
| BanI | GGYRCC | 2 cut(s) | 151, 322 |
| BanII | GRGCYC | 1 cut(s) | 555 |
| BauI | CACGAG | 1 cut(s) | 506 |
| Bbv12I | GWGCWC | 2 cut(s) | 195, 555 |
| BbvCI | CCTCAGC | 1 cut(s) | 774 |
| BbvI | GCAGC | 5 cut(s) | 96, 421, 648, 731, 745 |
| BccI | CCATC | 1 cut(s) | 99 |
| BceAI | ACGGC | 6 cut(s) | 101, 206, 437, 578, 585, 662 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 304, 338 |
| BciT130I | CCWGG | 3 cut(s) | 614, 724, 767 |
| BcnI | CCSGG | 3 cut(s) | 29, 181, 785 |
| BcoDI | GTCTC | 1 cut(s) | 26 |
| BfmI | CTRYAG | 1 cut(s) | 717 |
| BfoI | RGCGCY | 2 cut(s) | 44, 173 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 122, 728 |
| BisI | GCNGC | 8 cut(s) | 80, 110, 155, 410, 662, 720, 759, 798 |
| BlsI | GCNGC | 8 cut(s) | 81, 111, 156, 411, 663, 721, 760, 799 |
| Bme1390I | CCNGG | 6 cut(s) | 29, 181, 614, 724, 767, 785 |
| Bme18I | GGWCC | 1 cut(s) | 610 |
| BmeT110I | CYCGRG | 2 cut(s) | 413, 537 |
| BmgBI | CACGTC | 2 cut(s) | 256, 310 |
| BmgT120I | GGNCC | 1 cut(s) | 610 |
| BmiI | GGNNCC | 5 cut(s) | 60, 153, 324, 611, 782 |
| BmrFI | CCNGG | 6 cut(s) | 29, 181, 614, 724, 767, 785 |
| BmrI | ACTGGG | 1 cut(s) | 276 |
| BmsI | GCATC | 1 cut(s) | 565 |
| BmuI | ACTGGG | 1 cut(s) | 276 |
| BpmI | CTGGAG | 3 cut(s) | 449, 635, 662 |
| Bpu10I | CCTNAGC | 2 cut(s) | 554, 774 |
| BpuMI | CCSGG | 3 cut(s) | 29, 181, 785 |
| BsaJI | CCNNGG | 5 cut(s) | 54, 63, 216, 536, 766 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 326, 356 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 55, 186, 187, 217, 606, 709, 790 |
| Bse1I | ACTGG | 3 cut(s) | 136, 271, 432 |
| Bse3DI | GCAATG | 1 cut(s) | 228 |
| BseBI | CCWGG | 3 cut(s) | 614, 724, 767 |
| BseDI | CCNNGG | 5 cut(s) | 54, 63, 216, 536, 766 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 55, 186, 187, 217, 606, 709, 790 |
| BseMI | GCAATG | 1 cut(s) | 228 |
| BseMII | CTCAG | 2 cut(s) | 568, 765 |
| BseNI | ACTGG | 3 cut(s) | 136, 271, 432 |
| BseRI | GAGGAG | 2 cut(s) | 260, 575 |
| BseSI | GKGCMC | 2 cut(s) | 195, 327 |
| BseX3I | CGGCCG | 1 cut(s) | 570 |
| BseXI | GCAGC | 5 cut(s) | 96, 421, 648, 731, 745 |
| BseYI | CCCAGC | 1 cut(s) | 211 |
| Bsh1236I | CGCG | 1 cut(s) | 329 |
| Bsh1285I | CGRYCG | 3 cut(s) | 450, 573, 795 |
| BshFI | GGCC | 5 cut(s) | 221, 572, 593, 677, 765 |
| BshNI | GGYRCC | 2 cut(s) | 151, 322 |
| BsiEI | CGRYCG | 3 cut(s) | 450, 573, 795 |
| BsiHKAI | GWGCWC | 2 cut(s) | 195, 555 |
| BsiHKCI | CYCGRG | 2 cut(s) | 413, 537 |
| BsiSI | CCGG | 3 cut(s) | 29, 181, 784 |
| BslFI | GGGAC | 3 cut(s) | 142, 623, 640 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 55, 186, 187, 217, 606, 709, 790 |
| BsmAI | GTCTC | 1 cut(s) | 26 |
| BsmBI | CGTCTC | 1 cut(s) | 26 |
| BsmFI | GGGAC | 3 cut(s) | 142, 623, 640 |
| BsnI | GGCC | 5 cut(s) | 221, 572, 593, 677, 765 |
| BsoBI | CYCGRG | 2 cut(s) | 413, 537 |
| Bsp1286I | GDGCHC | 3 cut(s) | 195, 327, 555 |
| Bsp143I | GATC | 1 cut(s) | 699 |
| BspANI | GGCC | 5 cut(s) | 221, 572, 593, 677, 765 |
| BspCNI | CTCAG | 2 cut(s) | 567, 766 |
| BspFNI | CGCG | 1 cut(s) | 329 |
| BspLI | GGNNCC | 5 cut(s) | 60, 153, 324, 611, 782 |
| BspMAI | CTGCAG | 1 cut(s) | 721 |
| BspPI | GGATC | 1 cut(s) | 694 |
| BspT107I | GGYRCC | 2 cut(s) | 151, 322 |
| BsrBI | CCGCTC | 2 cut(s) | 547, 619 |
| BsrDI | GCAATG | 1 cut(s) | 228 |
| BsrI | ACTGG | 3 cut(s) | 136, 271, 432 |
| BssECI | CCNNGG | 5 cut(s) | 54, 63, 216, 536, 766 |
| BssMI | GATC | 1 cut(s) | 699 |
| BssSI | CACGAG | 1 cut(s) | 506 |
| Bst2BI | CACGAG | 1 cut(s) | 506 |
| Bst2UI | CCWGG | 3 cut(s) | 614, 724, 767 |
| Bst4CI | ACNGT | 3 cut(s) | 19, 205, 377 |
| Bst6I | CTCTTC | 1 cut(s) | 237 |
| BstC8I | GCNNGC | 9 cut(s) | 39, 114, 235, 278, 327, 331, 407, 729, 763 |
| BstDEI | CTNAG | 3 cut(s) | 337, 554, 774 |
| BstDSI | CCRYGG | 1 cut(s) | 63 |
| BstFNI | CGCG | 1 cut(s) | 329 |
| BstH2I | RGCGCY | 2 cut(s) | 44, 173 |
| BstHHI | GCGC | 4 cut(s) | 43, 172, 186, 210 |
| BstKTI | GATC | 1 cut(s) | 702 |
| BstMAI | GTCTC | 1 cut(s) | 26 |
| BstMBI | GATC | 1 cut(s) | 699 |
| BstMCI | CGRYCG | 3 cut(s) | 450, 573, 795 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 76, 122, 190, 296, 356, 728, 797 |
| BstNI | CCWGG | 3 cut(s) | 614, 724, 767 |
| BstSCI | CCNGG | 6 cut(s) | 27, 179, 612, 722, 765, 783 |
| BstSFI | CTRYAG | 1 cut(s) | 717 |
| BstSLI | GKGCMC | 2 cut(s) | 195, 327 |
| BstUI | CGCG | 1 cut(s) | 329 |
| BstV1I | GCAGC | 5 cut(s) | 96, 421, 648, 731, 745 |
| BstX2I | RGATCY | 1 cut(s) | 699 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 98 |
| BstYI | RGATCY | 1 cut(s) | 699 |
| BstZI | CGGCCG | 1 cut(s) | 570 |
| BsuRI | GGCC | 5 cut(s) | 221, 572, 593, 677, 765 |
| BtgI | CCRYGG | 1 cut(s) | 63 |
| BtrI | CACGTC | 2 cut(s) | 256, 310 |
| BtsI | GCAGTG | 1 cut(s) | 357 |
| BtsIMutI | CAGTG | 2 cut(s) | 210, 357 |
| Cac8I | GCNNGC | 9 cut(s) | 39, 114, 235, 278, 327, 331, 407, 729, 763 |
| CfoI | GCGC | 4 cut(s) | 43, 172, 186, 210 |
| Cfr13I | GGNCC | 1 cut(s) | 610 |
| CseI | GACGC | 1 cut(s) | 43 |
| Csp6I | GTAC | 2 cut(s) | 355, 440 |
| CviAII | CATG | 1 cut(s) | 76 |
| CviQI | GTAC | 2 cut(s) | 355, 440 |
| DdeI | CTNAG | 3 cut(s) | 337, 554, 774 |
| DpnI | GATC | 1 cut(s) | 701 |
| DpnII | GATC | 1 cut(s) | 699 |
| EaeI | YGGCCR | 3 cut(s) | 570, 591, 675 |
| EagI | CGGCCG | 1 cut(s) | 570 |
| Eam1104I | CTCTTC | 1 cut(s) | 237 |
| EarI | CTCTTC | 1 cut(s) | 237 |
| EciI | GGCGGA | 2 cut(s) | 438, 746 |
| Ecl136II | GAGCTC | 1 cut(s) | 553 |
| EclXI | CGGCCG | 1 cut(s) | 570 |
| Eco24I | GRGCYC | 1 cut(s) | 555 |
| Eco47I | GGWCC | 1 cut(s) | 610 |
| Eco52I | CGGCCG | 1 cut(s) | 570 |
| Eco53kI | GAGCTC | 1 cut(s) | 553 |
| Eco57I | CTGAAG | 2 cut(s) | 454, 689 |
| Eco88I | CYCGRG | 2 cut(s) | 413, 537 |
| EcoICRI | GAGCTC | 1 cut(s) | 553 |
| EcoO109I | RGGNCCY | 1 cut(s) | 610 |
| EcoRII | CCWGG | 3 cut(s) | 612, 722, 765 |
| EcoT38I | GRGCYC | 1 cut(s) | 555 |
| Esp3I | CGTCTC | 1 cut(s) | 26 |
| FaeI | CATG | 1 cut(s) | 79 |
| FaiI | YATR | 4 cut(s) | 77, 489, 518, 653 |
| FaqI | GGGAC | 3 cut(s) | 142, 623, 640 |
| FatI | CATG | 1 cut(s) | 75 |
| FauI | CCCGC | 6 cut(s) | 118, 226, 230, 334, 540, 702 |
| FblI | GTMKAC | 1 cut(s) | 456 |
| Fnu4HI | GCNGC | 8 cut(s) | 80, 110, 155, 410, 662, 720, 759, 798 |
| FriOI | GRGCYC | 1 cut(s) | 555 |
| Fsp4HI | GCNGC | 8 cut(s) | 80, 110, 155, 410, 662, 720, 759, 798 |
| GlaI | GCGC | 4 cut(s) | 42, 171, 185, 209 |
| GluI | GCNGC | 8 cut(s) | 80, 110, 155, 410, 662, 720, 759, 798 |
| GsaI | CCCAGC | 1 cut(s) | 215 |
| GsuI | CTGGAG | 3 cut(s) | 449, 635, 662 |
| HaeII | RGCGCY | 2 cut(s) | 44, 173 |
| HaeIII | GGCC | 5 cut(s) | 221, 572, 593, 677, 765 |
| HapII | CCGG | 3 cut(s) | 29, 181, 784 |
| HgaI | GACGC | 1 cut(s) | 43 |
| HhaI | GCGC | 4 cut(s) | 43, 172, 186, 210 |
| Hin1II | CATG | 1 cut(s) | 79 |
| Hin6I | GCGC | 4 cut(s) | 41, 170, 184, 208 |
| HinP1I | GCGC | 4 cut(s) | 41, 170, 184, 208 |
| HinfI | GANTC | 4 cut(s) | 7, 341, 713, 806 |
| HpaII | CCGG | 3 cut(s) | 29, 181, 784 |
| HphI | GGTGA | 8 cut(s) | 113, 146, 169, 217, 263, 389, 577, 764 |
| Hpy166II | GTNNAC | 4 cut(s) | 25, 193, 355, 457 |
| Hpy188I | TCNGA | 1 cut(s) | 55 |
| Hpy8I | GTNNAC | 4 cut(s) | 25, 193, 355, 457 |
| Hpy99I | CGWCG | 1 cut(s) | 599 |
| HpyAV | CCTTC | 3 cut(s) | 478, 685, 713 |
| HpyCH4III | ACNGT | 3 cut(s) | 19, 205, 377 |
| HpyCH4IV | ACGT | 2 cut(s) | 255, 309 |
| HpyCH4V | TGCA | 3 cut(s) | 193, 350, 719 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 76, 122, 190, 296, 356, 728, 797 |
| HpyF3I | CTNAG | 3 cut(s) | 337, 554, 774 |
| HpySE526I | ACGT | 2 cut(s) | 255, 309 |
| Hsp92II | CATG | 1 cut(s) | 79 |
| HspAI | GCGC | 4 cut(s) | 41, 170, 184, 208 |
| Kzo9I | GATC | 1 cut(s) | 699 |
| LmnI | GCTCC | 5 cut(s) | 304, 550, 616, 643, 780 |
| Lsp1109I | GCAGC | 5 cut(s) | 96, 421, 648, 731, 745 |
| LweI | GCATC | 1 cut(s) | 565 |
| MaeII | ACGT | 2 cut(s) | 255, 309 |
| MaeIII | GTNAC | 5 cut(s) | 101, 175, 223, 251, 565 |
| MalI | GATC | 1 cut(s) | 701 |
| MbiI | CCGCTC | 2 cut(s) | 547, 619 |
| MboI | GATC | 1 cut(s) | 699 |
| MboII | GAAGA | 2 cut(s) | 254, 295 |
| MflI | RGATCY | 1 cut(s) | 699 |
| MhlI | GDGCHC | 3 cut(s) | 195, 327, 555 |
| MluCI | AATT | 1 cut(s) | 629 |
| MlyI | GAGTC | 3 cut(s) | 335, 722, 815 |
| MmeI | TCCRAC | 2 cut(s) | 478, 726 |
| MseI | TTAA | 3 cut(s) | 45, 368, 738 |
| MslI | CAYNNNNRTG | 1 cut(s) | 96 |
| MspA1I | CMGCKG | 2 cut(s) | 709, 800 |
| MspI | CCGG | 3 cut(s) | 29, 181, 784 |
| MspR9I | CCNGG | 6 cut(s) | 29, 181, 614, 724, 767, 785 |
| MvaI | CCWGG | 3 cut(s) | 614, 724, 767 |
| MvnI | CGCG | 1 cut(s) | 329 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 76, 122, 190, 296, 356, 728, 797 |
| NciI | CCSGG | 3 cut(s) | 29, 181, 785 |
| NdeII | GATC | 1 cut(s) | 699 |
| NlaIII | CATG | 1 cut(s) | 79 |
| NlaIV | GGNNCC | 5 cut(s) | 60, 153, 324, 611, 782 |
| NmeAIII | GCCGAG | 2 cut(s) | 241, 385 |
| NmuCI | GTSAC | 5 cut(s) | 101, 175, 223, 251, 565 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 606 |
| PkrI | GCNGC | 8 cut(s) | 81, 111, 156, 411, 663, 721, 760, 799 |
| PleI | GAGTC | 3 cut(s) | 335, 721, 814 |
| PpsI | GAGTC | 3 cut(s) | 335, 721, 814 |
| PpuMI | RGGWCCY | 1 cut(s) | 610 |
| Psp124BI | GAGCTC | 1 cut(s) | 555 |
| Psp5II | RGGWCCY | 1 cut(s) | 610 |
| Psp6I | CCWGG | 3 cut(s) | 612, 722, 765 |
| PspFI | CCCAGC | 1 cut(s) | 211 |
| PspGI | CCWGG | 3 cut(s) | 612, 722, 765 |
| PspN4I | GGNNCC | 5 cut(s) | 60, 153, 324, 611, 782 |
| PspPI | GGNCC | 1 cut(s) | 610 |
| PspPPI | RGGWCCY | 1 cut(s) | 610 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 347, 379 |
| PstI | CTGCAG | 1 cut(s) | 721 |
| PsuI | RGATCY | 1 cut(s) | 699 |
| RsaI | GTAC | 2 cut(s) | 356, 441 |
| RsaNI | GTAC | 2 cut(s) | 355, 440 |
| RseI | CAYNNNNRTG | 1 cut(s) | 96 |
| SacI | GAGCTC | 1 cut(s) | 555 |
| SaqAI | TTAA | 3 cut(s) | 45, 368, 738 |
| SatI | GCNGC | 8 cut(s) | 80, 110, 155, 410, 662, 720, 759, 798 |
| Sau3AI | GATC | 1 cut(s) | 699 |
| Sau96I | GGNCC | 1 cut(s) | 610 |
| SchI | GAGTC | 3 cut(s) | 335, 722, 815 |
| ScrFI | CCNGG | 6 cut(s) | 29, 181, 614, 724, 767, 785 |
| SduI | GDGCHC | 3 cut(s) | 195, 327, 555 |
| SfaNI | GCATC | 1 cut(s) | 565 |
| SfcI | CTRYAG | 1 cut(s) | 717 |
| SinI | GGWCC | 1 cut(s) | 610 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 96 |
| Sse9I | AATT | 1 cut(s) | 629 |
| SstI | GAGCTC | 1 cut(s) | 555 |
| StyD4I | CCNGG | 6 cut(s) | 27, 179, 612, 722, 765, 783 |
| TaaI | ACNGT | 3 cut(s) | 19, 205, 377 |
| TaiI | ACGT | 2 cut(s) | 258, 312 |
| TaqI | TCGA | 2 cut(s) | 314, 446 |
| TasI | AATT | 1 cut(s) | 629 |
| TauI | GCSGC | 3 cut(s) | 82, 157, 800 |
| Tru1I | TTAA | 3 cut(s) | 45, 368, 738 |
| Tru9I | TTAA | 3 cut(s) | 45, 368, 738 |
| TscAI | CASTG | 2 cut(s) | 210, 357 |
| TseFI | GTSAC | 5 cut(s) | 101, 175, 223, 251, 565 |
| TseI | GCWGC | 5 cut(s) | 109, 409, 661, 719, 758 |
| Tsp45I | GTSAC | 5 cut(s) | 101, 175, 223, 251, 565 |
| TspGWI | ACGGA | 1 cut(s) | 484 |
| TspRI | CASTG | 2 cut(s) | 210, 357 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 606 |
| VneI | GTGCAC | 1 cut(s) | 191 |
| VpaK11BI | GGWCC | 1 cut(s) | 610 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 92 |
| XmiI | GTMKAC | 1 cut(s) | 456 |