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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 554 |
| AccBSI | CCGCTC | 2 cut(s) | 19, 298 |
| AccII | CGCG | 1 cut(s) | 477 |
| AcoI | YGGCCR | 3 cut(s) | 282, 366, 561 |
| AcuI | CTGAAG | 1 cut(s) | 64 |
| AcyI | GRCGYC | 2 cut(s) | 33, 134 |
| AfaI | GTAC | 2 cut(s) | 55, 503 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 190, 213, 297, 354, 355 |
| AflIII | ACRYGT | 1 cut(s) | 342 |
| AgsI | TTSAA | 1 cut(s) | 389 |
| AjiI | CACGTC | 1 cut(s) | 100 |
| AjnI | CCWGG | 4 cut(s) | 36, 126, 207, 303 |
| AluBI | AGCT | 1 cut(s) | 163 |
| AluI | AGCT | 1 cut(s) | 163 |
| Alw21I | GWGCWC | 1 cut(s) | 165 |
| AoxI | GGCC | 8 cut(s) | 181, 204, 246, 282, 366, 420, 549, 561 |
| ApeKI | GCWGC | 4 cut(s) | 352, 479, 542, 577 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 393 |
| AspLEI | GCGC | 1 cut(s) | 479 |
| AspS9I | GGNCC | 3 cut(s) | 181, 205, 301 |
| AsuHPI | GGTGA | 2 cut(s) | 439, 455 |
| AvaII | GGWCC | 1 cut(s) | 301 |
| BaeGI | GKGCMC | 1 cut(s) | 99 |
| BalI | TGGCCA | 1 cut(s) | 563 |
| BanI | GGYRCC | 1 cut(s) | 554 |
| BanII | GRGCYC | 1 cut(s) | 165 |
| Bbv12I | GWGCWC | 1 cut(s) | 165 |
| BbvI | GCAGC | 4 cut(s) | 339, 466, 554, 564 |
| BceAI | ACGGC | 4 cut(s) | 47, 89, 102, 269 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 480, 514 |
| BciT130I | CCWGG | 4 cut(s) | 38, 128, 209, 305 |
| BfmI | CTRYAG | 3 cut(s) | 185, 480, 578 |
| BisI | GCNGC | 8 cut(s) | 132, 353, 369, 475, 480, 489, 543, 578 |
| BlsI | GCNGC | 8 cut(s) | 133, 354, 370, 476, 481, 490, 544, 579 |
| Bme1390I | CCNGG | 4 cut(s) | 38, 128, 209, 305 |
| Bme18I | GGWCC | 1 cut(s) | 301 |
| BmgBI | CACGTC | 1 cut(s) | 100 |
| BmgT120I | GGNCC | 3 cut(s) | 181, 205, 301 |
| BmiI | GGNNCC | 3 cut(s) | 302, 473, 556 |
| BmrFI | CCNGG | 4 cut(s) | 38, 128, 209, 305 |
| BmsI | GCATC | 1 cut(s) | 102 |
| BpmI | CTGGAG | 2 cut(s) | 59, 326 |
| Bpu10I | CCTNAGC | 2 cut(s) | 164, 372 |
| BsaHI | GRCGYC | 2 cut(s) | 33, 134 |
| BsaJI | CCNNGG | 5 cut(s) | 207, 271, 423, 465, 558 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 190, 213, 297, 354, 355 |
| Bse118I | RCCGGY | 1 cut(s) | 551 |
| Bse3DI | GCAATG | 1 cut(s) | 537 |
| BseBI | CCWGG | 4 cut(s) | 38, 128, 209, 305 |
| BseDI | CCNNGG | 5 cut(s) | 207, 271, 423, 465, 558 |
| BseGI | GGATG | 1 cut(s) | 117 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 190, 213, 297, 354, 355 |
| BseMI | GCAATG | 1 cut(s) | 537 |
| BseMII | CTCAG | 2 cut(s) | 178, 449 |
| BseRI | GAGGAG | 1 cut(s) | 185 |
| BseSI | GKGCMC | 1 cut(s) | 99 |
| BseXI | GCAGC | 4 cut(s) | 339, 466, 554, 564 |
| Bsh1236I | CGCG | 1 cut(s) | 477 |
| BshFI | GGCC | 8 cut(s) | 183, 206, 248, 284, 368, 422, 551, 563 |
| BshNI | GGYRCC | 1 cut(s) | 554 |
| BsiHKAI | GWGCWC | 1 cut(s) | 165 |
| BsiSI | CCGG | 1 cut(s) | 552 |
| BslFI | GGGAC | 3 cut(s) | 206, 314, 331 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 190, 213, 297, 354, 355 |
| BsmFI | GGGAC | 3 cut(s) | 206, 314, 331 |
| BsnI | GGCC | 8 cut(s) | 183, 206, 248, 284, 368, 422, 551, 563 |
| Bsp1286I | GDGCHC | 2 cut(s) | 99, 165 |
| Bsp1407I | TGTACA | 1 cut(s) | 53 |
| Bsp19I | CCATGG | 1 cut(s) | 558 |
| BspANI | GGCC | 8 cut(s) | 183, 206, 248, 284, 368, 422, 551, 563 |
| BspCNI | CTCAG | 2 cut(s) | 177, 450 |
| BspFNI | CGCG | 1 cut(s) | 477 |
| BspLI | GGNNCC | 3 cut(s) | 302, 473, 556 |
| BspMAI | CTGCAG | 2 cut(s) | 484, 582 |
| BspT107I | GGYRCC | 1 cut(s) | 554 |
| BsrBI | CCGCTC | 2 cut(s) | 19, 298 |
| BsrDI | GCAATG | 1 cut(s) | 537 |
| BsrFI | RCCGGY | 1 cut(s) | 551 |
| BsrGI | TGTACA | 1 cut(s) | 53 |
| BssAI | RCCGGY | 1 cut(s) | 551 |
| BssECI | CCNNGG | 5 cut(s) | 207, 271, 423, 465, 558 |
| BssNI | GRCGYC | 2 cut(s) | 33, 134 |
| BssT1I | CCWWGG | 1 cut(s) | 558 |
| Bst2UI | CCWGG | 4 cut(s) | 38, 128, 209, 305 |
| Bst4CI | ACNGT | 2 cut(s) | 321, 435 |
| BstACI | GRCGYC | 2 cut(s) | 33, 134 |
| BstAUI | TGTACA | 1 cut(s) | 53 |
| BstC8I | GCNNGC | 3 cut(s) | 17, 181, 454 |
| BstDEI | CTNAG | 3 cut(s) | 164, 372, 458 |
| BstDSI | CCRYGG | 2 cut(s) | 271, 558 |
| BstF5I | GGATG | 1 cut(s) | 117 |
| BstFNI | CGCG | 1 cut(s) | 477 |
| BstHHI | GCGC | 1 cut(s) | 479 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 485, 488, 548 |
| BstNI | CCWGG | 4 cut(s) | 38, 128, 209, 305 |
| BstNSI | RCATGY | 1 cut(s) | 346 |
| BstSCI | CCNGG | 4 cut(s) | 36, 126, 207, 303 |
| BstSFI | CTRYAG | 3 cut(s) | 185, 480, 578 |
| BstSLI | GKGCMC | 1 cut(s) | 99 |
| BstUI | CGCG | 1 cut(s) | 477 |
| BstV1I | GCAGC | 4 cut(s) | 339, 466, 554, 564 |
| BsuRI | GGCC | 8 cut(s) | 183, 206, 248, 284, 368, 422, 551, 563 |
| BtgI | CCRYGG | 2 cut(s) | 271, 558 |
| BtrI | CACGTC | 1 cut(s) | 100 |
| BtsCI | GGATG | 1 cut(s) | 117 |
| BtsI | GCAGTG | 1 cut(s) | 498 |
| BtsIMutI | CAGTG | 1 cut(s) | 498 |
| Cac8I | GCNNGC | 3 cut(s) | 17, 181, 454 |
| CfoI | GCGC | 1 cut(s) | 479 |
| Cfr10I | RCCGGY | 1 cut(s) | 551 |
| Cfr13I | GGNCC | 3 cut(s) | 181, 205, 301 |
| CseI | GACGC | 3 cut(s) | 22, 123, 243 |
| Csp6I | GTAC | 2 cut(s) | 54, 502 |
| CviAII | CATG | 3 cut(s) | 116, 343, 559 |
| CviQI | GTAC | 2 cut(s) | 54, 502 |
| DdeI | CTNAG | 3 cut(s) | 164, 372, 458 |
| EaeI | YGGCCR | 3 cut(s) | 282, 366, 561 |
| EciI | GGCGGA | 1 cut(s) | 530 |
| Ecl136II | GAGCTC | 1 cut(s) | 163 |
| Eco130I | CCWWGG | 1 cut(s) | 558 |
| Eco24I | GRGCYC | 1 cut(s) | 165 |
| Eco47I | GGWCC | 1 cut(s) | 301 |
| Eco53kI | GAGCTC | 1 cut(s) | 163 |
| Eco57I | CTGAAG | 1 cut(s) | 64 |
| EcoICRI | GAGCTC | 1 cut(s) | 163 |
| EcoO109I | RGGNCCY | 1 cut(s) | 301 |
| EcoRII | CCWGG | 4 cut(s) | 36, 126, 207, 303 |
| EcoT14I | CCWWGG | 1 cut(s) | 558 |
| EcoT22I | ATGCAT | 1 cut(s) | 117 |
| EcoT38I | GRGCYC | 1 cut(s) | 165 |
| ErhI | CCWWGG | 1 cut(s) | 558 |
| FaeI | CATG | 3 cut(s) | 119, 346, 562 |
| FaiI | YATR | 3 cut(s) | 117, 344, 560 |
| FaqI | GGGAC | 3 cut(s) | 206, 314, 331 |
| FatI | CATG | 3 cut(s) | 115, 342, 558 |
| FauI | CCCGC | 4 cut(s) | 172, 291, 348, 461 |
| Fnu4HI | GCNGC | 8 cut(s) | 132, 353, 369, 475, 480, 489, 543, 578 |
| FokI | GGATG | 1 cut(s) | 124 |
| FriOI | GRGCYC | 1 cut(s) | 165 |
| Fsp4HI | GCNGC | 8 cut(s) | 132, 353, 369, 475, 480, 489, 543, 578 |
| GlaI | GCGC | 1 cut(s) | 478 |
| GluI | GCNGC | 8 cut(s) | 132, 353, 369, 475, 480, 489, 543, 578 |
| GsuI | CTGGAG | 2 cut(s) | 59, 326 |
| HaeIII | GGCC | 8 cut(s) | 183, 206, 248, 284, 368, 422, 551, 563 |
| HapII | CCGG | 1 cut(s) | 552 |
| HgaI | GACGC | 3 cut(s) | 22, 123, 243 |
| HhaI | GCGC | 1 cut(s) | 479 |
| Hin1I | GRCGYC | 2 cut(s) | 33, 134 |
| Hin1II | CATG | 3 cut(s) | 119, 346, 562 |
| Hin6I | GCGC | 1 cut(s) | 477 |
| HinP1I | GCGC | 1 cut(s) | 477 |
| HincII | GTYRAC | 1 cut(s) | 67 |
| HindII | GTYRAC | 1 cut(s) | 67 |
| HinfI | GANTC | 1 cut(s) | 497 |
| HpaII | CCGG | 1 cut(s) | 552 |
| HphI | GGTGA | 2 cut(s) | 439, 455 |
| Hpy166II | GTNNAC | 1 cut(s) | 67 |
| Hpy8I | GTNNAC | 1 cut(s) | 67 |
| Hpy99I | CGWCG | 2 cut(s) | 104, 237 |
| HpyAV | CCTTC | 3 cut(s) | 88, 376, 541 |
| HpyCH4III | ACNGT | 2 cut(s) | 321, 435 |
| HpyCH4IV | ACGT | 1 cut(s) | 99 |
| HpyCH4V | TGCA | 3 cut(s) | 115, 482, 580 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 485, 488, 548 |
| HpyF3I | CTNAG | 3 cut(s) | 164, 372, 458 |
| HpySE526I | ACGT | 1 cut(s) | 99 |
| Hsp92I | GRCGYC | 2 cut(s) | 33, 134 |
| Hsp92II | CATG | 3 cut(s) | 119, 346, 562 |
| HspAI | GCGC | 1 cut(s) | 477 |
| LmnI | GCTCC | 1 cut(s) | 471 |
| Lsp1109I | GCAGC | 4 cut(s) | 339, 466, 554, 564 |
| LweI | GCATC | 1 cut(s) | 102 |
| MaeII | ACGT | 1 cut(s) | 99 |
| MbiI | CCGCTC | 2 cut(s) | 19, 298 |
| MhlI | GDGCHC | 2 cut(s) | 99, 165 |
| MlsI | TGGCCA | 1 cut(s) | 563 |
| MluNI | TGGCCA | 1 cut(s) | 563 |
| MlyI | GAGTC | 1 cut(s) | 506 |
| MmeI | TCCRAC | 1 cut(s) | 417 |
| Mox20I | TGGCCA | 1 cut(s) | 563 |
| Mph1103I | ATGCAT | 1 cut(s) | 117 |
| MroXI | GAANNNNTTC | 1 cut(s) | 393 |
| MscI | TGGCCA | 1 cut(s) | 563 |
| Msp20I | TGGCCA | 1 cut(s) | 563 |
| MspI | CCGG | 1 cut(s) | 552 |
| MspR9I | CCNGG | 4 cut(s) | 38, 128, 209, 305 |
| MvaI | CCWGG | 4 cut(s) | 38, 128, 209, 305 |
| MvnI | CGCG | 1 cut(s) | 477 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 485, 488, 548 |
| NcoI | CCATGG | 1 cut(s) | 558 |
| NlaIII | CATG | 3 cut(s) | 119, 346, 562 |
| NlaIV | GGNNCC | 3 cut(s) | 302, 473, 556 |
| NmeAIII | GCCGAG | 2 cut(s) | 448, 490 |
| NsiI | ATGCAT | 1 cut(s) | 117 |
| NspI | RCATGY | 1 cut(s) | 346 |
| PciI | ACATGT | 1 cut(s) | 342 |
| PdmI | GAANNNNTTC | 1 cut(s) | 393 |
| PfoI | TCCNGGA | 1 cut(s) | 36 |
| PkrI | GCNGC | 8 cut(s) | 133, 354, 370, 476, 481, 490, 544, 579 |
| PleI | GAGTC | 1 cut(s) | 505 |
| PpsI | GAGTC | 1 cut(s) | 505 |
| PpuMI | RGGWCCY | 1 cut(s) | 301 |
| PscI | ACATGT | 1 cut(s) | 342 |
| Psp124BI | GAGCTC | 1 cut(s) | 165 |
| Psp5II | RGGWCCY | 1 cut(s) | 301 |
| Psp6I | CCWGG | 4 cut(s) | 36, 126, 207, 303 |
| PspGI | CCWGG | 4 cut(s) | 36, 126, 207, 303 |
| PspN4I | GGNNCC | 3 cut(s) | 302, 473, 556 |
| PspPI | GGNCC | 3 cut(s) | 181, 205, 301 |
| PspPPI | RGGWCCY | 1 cut(s) | 301 |
| PstI | CTGCAG | 2 cut(s) | 484, 582 |
| RsaI | GTAC | 2 cut(s) | 55, 503 |
| RsaNI | GTAC | 2 cut(s) | 54, 502 |
| SacI | GAGCTC | 1 cut(s) | 165 |
| SatI | GCNGC | 8 cut(s) | 132, 353, 369, 475, 480, 489, 543, 578 |
| Sau96I | GGNCC | 3 cut(s) | 181, 205, 301 |
| SchI | GAGTC | 1 cut(s) | 506 |
| ScrFI | CCNGG | 4 cut(s) | 38, 128, 209, 305 |
| SduI | GDGCHC | 2 cut(s) | 99, 165 |
| SetI | ASST | 8 cut(s) | 12, 102, 165, 177, 218, 306, 387, 429 |
| SfaNI | GCATC | 1 cut(s) | 102 |
| SfcI | CTRYAG | 3 cut(s) | 185, 480, 578 |
| SinI | GGWCC | 1 cut(s) | 301 |
| SstI | GAGCTC | 1 cut(s) | 165 |
| StyD4I | CCNGG | 4 cut(s) | 36, 126, 207, 303 |
| StyI | CCWWGG | 1 cut(s) | 558 |
| TaaI | ACNGT | 2 cut(s) | 321, 435 |
| TaiI | ACGT | 1 cut(s) | 102 |
| TaqI | TCGA | 1 cut(s) | 228 |
| TaqII | GACCGA | 1 cut(s) | 551 |
| TatI | WGTACW | 1 cut(s) | 53 |
| TauI | GCSGC | 4 cut(s) | 134, 371, 477, 491 |
| TscAI | CASTG | 1 cut(s) | 498 |
| TseI | GCWGC | 4 cut(s) | 352, 479, 542, 577 |
| TspDTI | ATGAA | 1 cut(s) | 132 |
| TspRI | CASTG | 1 cut(s) | 498 |
| VpaK11BI | GGWCC | 1 cut(s) | 301 |
| XceI | RCATGY | 1 cut(s) | 346 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 565 |
| XmnI | GAANNNNTTC | 1 cut(s) | 393 |
| Zsp2I | ATGCAT | 1 cut(s) | 117 |