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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 147, 562 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 858 |
| Acc36I | ACCTGC | 3 cut(s) | 147, 562, 1261 |
| Acc65I | GGTACC | 1 cut(s) | 1406 |
| AccB1I | GGYRCC | 2 cut(s) | 1286, 1406 |
| AccBSI | CCGCTC | 2 cut(s) | 997, 1400 |
| AccI | GTMKAC | 2 cut(s) | 165, 872 |
| AccII | CGCG | 3 cut(s) | 183, 785, 1371 |
| AclWI | GGATC | 3 cut(s) | 252, 311, 794 |
| AcoI | YGGCCR | 2 cut(s) | 876, 1383 |
| AcsI | RAATTY | 1 cut(s) | 1362 |
| AcuI | CTGAAG | 2 cut(s) | 1061, 1067 |
| AfaI | GTAC | 2 cut(s) | 1208, 1408 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 69, 256, 475, 984, 1168, 1462 |
| AgsI | TTSAA | 3 cut(s) | 620, 983, 1192 |
| AhlI | ACTAGT | 1 cut(s) | 1051 |
| AjiI | CACGTC | 1 cut(s) | 1009 |
| AjnI | CCWGG | 1 cut(s) | 762 |
| AluBI | AGCT | 4 cut(s) | 157, 900, 967, 1151 |
| AluI | AGCT | 4 cut(s) | 157, 900, 967, 1151 |
| Alw26I | GTCTC | 4 cut(s) | 341, 516, 668, 1015 |
| AlwI | GGATC | 3 cut(s) | 252, 311, 794 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 328, 422 |
| Ama87I | CYCGRG | 2 cut(s) | 470, 1229 |
| AoxI | GGCC | 9 cut(s) | 297, 462, 584, 684, 702, 711, 760, 876, 1383 |
| ApaI | GGGCCC | 1 cut(s) | 688 |
| ApeKI | GCWGC | 3 cut(s) | 718, 751, 1202 |
| ApoI | RAATTY | 1 cut(s) | 1362 |
| Asp718I | GGTACC | 1 cut(s) | 1406 |
| AspLEI | GCGC | 5 cut(s) | 39, 183, 185, 392, 1373 |
| AspS9I | GGNCC | 7 cut(s) | 56, 298, 684, 685, 988, 1045, 1250 |
| AsuC2I | CCSGG | 2 cut(s) | 1230, 1231 |
| AsuNHI | GCTAGC | 1 cut(s) | 1256 |
| AvaI | CYCGRG | 2 cut(s) | 470, 1229 |
| AvaII | GGWCC | 4 cut(s) | 56, 988, 1045, 1250 |
| BaeGI | GKGCMC | 2 cut(s) | 495, 688 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1398, 1431 |
| BalI | TGGCCA | 1 cut(s) | 1385 |
| BanI | GGYRCC | 2 cut(s) | 1286, 1406 |
| BanII | GRGCYC | 2 cut(s) | 688, 1427 |
| BauI | CACGAG | 1 cut(s) | 1434 |
| BbvCI | CCTCAGC | 1 cut(s) | 1110 |
| BbvI | GCAGC | 3 cut(s) | 730, 763, 1214 |
| BccI | CCATC | 2 cut(s) | 389, 1397 |
| BceAI | ACGGC | 3 cut(s) | 489, 891, 962 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 9, 43, 212, 246 |
| BciT130I | CCWGG | 1 cut(s) | 764 |
| BclI | TGATCA | 1 cut(s) | 1444 |
| BcnI | CCSGG | 2 cut(s) | 1230, 1231 |
| BcoDI | GTCTC | 4 cut(s) | 341, 516, 668, 1015 |
| BcuI | ACTAGT | 1 cut(s) | 1051 |
| BfaI | CTAG | 6 cut(s) | 741, 839, 1019, 1052, 1257, 1452 |
| BfmI | CTRYAG | 3 cut(s) | 170, 351, 1200 |
| BfoI | RGCGCY | 1 cut(s) | 40 |
| BfuAI | ACCTGC | 3 cut(s) | 147, 562, 1261 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 608, 710 |
| Bme1390I | CCNGG | 3 cut(s) | 764, 1230, 1231 |
| Bme18I | GGWCC | 4 cut(s) | 56, 988, 1045, 1250 |
| BmeT110I | CYCGRG | 2 cut(s) | 470, 1229 |
| BmgBI | CACGTC | 1 cut(s) | 1009 |
| BmgT120I | GGNCC | 7 cut(s) | 56, 298, 684, 685, 988, 1045, 1250 |
| BmrFI | CCNGG | 3 cut(s) | 764, 1230, 1231 |
| BmsI | GCATC | 6 cut(s) | 351, 357, 391, 649, 658, 943 |
| BmtI | GCTAGC | 1 cut(s) | 1260 |
| BoxI | GACNNNNGTC | 1 cut(s) | 916 |
| BpmI | CTGGAG | 1 cut(s) | 444 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1110 |
| BpuEI | CTTGAG | 4 cut(s) | 601, 908, 1013, 1260 |
| BpuMI | CCSGG | 2 cut(s) | 1230, 1231 |
| Bsa29I | ATCGAT | 1 cut(s) | 315 |
| BsaI | GGTCTC | 2 cut(s) | 516, 668 |
| BsaJI | CCNNGG | 8 cut(s) | 240, 405, 505, 933, 1228, 1229, 1230, 1410 |
| BsaWI | WCCGGW | 1 cut(s) | 44 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 263, 293, 995, 1025 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 69, 256, 475, 984, 1168, 1462 |
| Bse118I | RCCGGY | 2 cut(s) | 443, 721 |
| Bse1I | ACTGG | 6 cut(s) | 192, 333, 340, 427, 597, 1149 |
| Bse3DI | GCAATG | 1 cut(s) | 564 |
| BseBI | CCWGG | 1 cut(s) | 764 |
| BseCI | ATCGAT | 1 cut(s) | 315 |
| BseDI | CCNNGG | 8 cut(s) | 240, 405, 505, 933, 1228, 1229, 1230, 1410 |
| BseGI | GGATG | 3 cut(s) | 196, 958, 1408 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 69, 256, 475, 984, 1168, 1462 |
| BseMI | GCAATG | 1 cut(s) | 564 |
| BseMII | CTCAG | 6 cut(s) | 527, 795, 1101, 1143, 1308, 1349 |
| BseNI | ACTGG | 6 cut(s) | 192, 333, 340, 427, 597, 1149 |
| BsePI | GCGCGC | 1 cut(s) | 181 |
| BseSI | GKGCMC | 2 cut(s) | 495, 688 |
| BseXI | GCAGC | 3 cut(s) | 730, 763, 1214 |
| BseYI | CCCAGC | 2 cut(s) | 287, 435 |
| BsgI | GTGCAG | 2 cut(s) | 479, 770 |
| Bsh1236I | CGCG | 3 cut(s) | 183, 785, 1371 |
| Bsh1285I | CGRYCG | 1 cut(s) | 872 |
| BshFI | GGCC | 9 cut(s) | 299, 464, 586, 686, 704, 713, 762, 878, 1385 |
| BshNI | GGYRCC | 2 cut(s) | 1286, 1406 |
| BshVI | ATCGAT | 1 cut(s) | 315 |
| BsiEI | CGRYCG | 1 cut(s) | 872 |
| BsiHKCI | CYCGRG | 2 cut(s) | 470, 1229 |
| BsiSI | CCGG | 4 cut(s) | 45, 444, 722, 1230 |
| BslFI | GGGAC | 6 cut(s) | 846, 904, 1001, 1103, 1204, 1263 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 69, 256, 475, 984, 1168, 1462 |
| BsmAI | GTCTC | 4 cut(s) | 341, 516, 668, 1015 |
| BsmBI | CGTCTC | 1 cut(s) | 1015 |
| BsmFI | GGGAC | 6 cut(s) | 846, 904, 1001, 1103, 1204, 1263 |
| BsmI | GAATGC | 1 cut(s) | 944 |
| BsnI | GGCC | 9 cut(s) | 299, 464, 586, 686, 704, 713, 762, 878, 1385 |
| Bso31I | GGTCTC | 2 cut(s) | 516, 668 |
| BsoBI | CYCGRG | 2 cut(s) | 470, 1229 |
| Bsp120I | GGGCCC | 1 cut(s) | 684 |
| Bsp1286I | GDGCHC | 3 cut(s) | 495, 688, 1427 |
| Bsp143I | GATC | 4 cut(s) | 244, 316, 799, 1444 |
| Bsp19I | CCATGG | 2 cut(s) | 240, 1410 |
| BspANI | GGCC | 9 cut(s) | 299, 464, 586, 686, 704, 713, 762, 878, 1385 |
| BspCNI | CTCAG | 6 cut(s) | 526, 796, 1102, 1144, 1307, 1348 |
| BspDI | ATCGAT | 1 cut(s) | 315 |
| BspFNI | CGCG | 3 cut(s) | 183, 785, 1371 |
| BspMAI | CTGCAG | 2 cut(s) | 355, 1204 |
| BspMI | ACCTGC | 3 cut(s) | 147, 562, 1261 |
| BspOI | GCTAGC | 1 cut(s) | 1260 |
| BspPI | GGATC | 3 cut(s) | 252, 311, 794 |
| BspT107I | GGYRCC | 2 cut(s) | 1286, 1406 |
| BspTNI | GGTCTC | 2 cut(s) | 516, 668 |
| BsrBI | CCGCTC | 2 cut(s) | 997, 1400 |
| BsrDI | GCAATG | 1 cut(s) | 564 |
| BsrFI | RCCGGY | 2 cut(s) | 443, 721 |
| BsrI | ACTGG | 6 cut(s) | 192, 333, 340, 427, 597, 1149 |
| BssAI | RCCGGY | 2 cut(s) | 443, 721 |
| BssECI | CCNNGG | 8 cut(s) | 240, 405, 505, 933, 1228, 1229, 1230, 1410 |
| BssHII | GCGCGC | 1 cut(s) | 181 |
| BssMI | GATC | 4 cut(s) | 244, 316, 799, 1444 |
| BssSI | CACGAG | 1 cut(s) | 1434 |
| BssT1I | CCWWGG | 2 cut(s) | 240, 1410 |
| Bst2BI | CACGAG | 1 cut(s) | 1434 |
| Bst2UI | CCWGG | 1 cut(s) | 764 |
| Bst4CI | ACNGT | 4 cut(s) | 64, 174, 310, 553 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 668 |
| BstDEI | CTNAG | 7 cut(s) | 513, 804, 1065, 1110, 1152, 1294, 1335 |
| BstDSI | CCRYGG | 4 cut(s) | 240, 405, 505, 1410 |
| BstEII | GGTNACC | 1 cut(s) | 574 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1460 |
| BstF5I | GGATG | 3 cut(s) | 196, 958, 1408 |
| BstFNI | CGCG | 3 cut(s) | 183, 785, 1371 |
| BstH2I | RGCGCY | 1 cut(s) | 40 |
| BstHHI | GCGC | 5 cut(s) | 39, 183, 185, 392, 1373 |
| BstKTI | GATC | 4 cut(s) | 247, 319, 802, 1447 |
| BstMAI | GTCTC | 4 cut(s) | 341, 516, 668, 1015 |
| BstMBI | GATC | 4 cut(s) | 244, 316, 799, 1444 |
| BstMCI | CGRYCG | 1 cut(s) | 872 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 293, 599, 608, 668, 710, 715, 953, 1106 |
| BstNI | CCWGG | 1 cut(s) | 764 |
| BstNSI | RCATGY | 1 cut(s) | 280 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 916 |
| BstPI | GGTNACC | 1 cut(s) | 574 |
| BstSCI | CCNGG | 3 cut(s) | 762, 1228, 1229 |
| BstSFI | CTRYAG | 3 cut(s) | 170, 351, 1200 |
| BstSLI | GKGCMC | 2 cut(s) | 495, 688 |
| BstUI | CGCG | 3 cut(s) | 183, 785, 1371 |
| BstV1I | GCAGC | 3 cut(s) | 730, 763, 1214 |
| BstX2I | RGATCY | 1 cut(s) | 244 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 241 |
| BstYI | RGATCY | 1 cut(s) | 244 |
| Bsu15I | ATCGAT | 1 cut(s) | 315 |
| BsuRI | GGCC | 9 cut(s) | 299, 464, 586, 686, 704, 713, 762, 878, 1385 |
| BsuTUI | ATCGAT | 1 cut(s) | 315 |
| BtgI | CCRYGG | 4 cut(s) | 240, 405, 505, 1410 |
| BtrI | CACGTC | 1 cut(s) | 1009 |
| BtsCI | GGATG | 3 cut(s) | 196, 958, 1408 |
| BtsI | GCAGTG | 2 cut(s) | 360, 1267 |
| BtsIMutI | CAGTG | 5 cut(s) | 185, 326, 360, 604, 1267 |
| BveI | ACCTGC | 3 cut(s) | 147, 562, 1261 |
| CaiI | CAGNNNCTG | 2 cut(s) | 328, 422 |
| CfoI | GCGC | 5 cut(s) | 39, 183, 185, 392, 1373 |
| Cfr10I | RCCGGY | 2 cut(s) | 443, 721 |
| Cfr13I | GGNCC | 7 cut(s) | 56, 298, 684, 685, 988, 1045, 1250 |
| Cfr9I | CCCGGG | 1 cut(s) | 1229 |
| ClaI | ATCGAT | 1 cut(s) | 315 |
| CseI | GACGC | 1 cut(s) | 233 |
| Csp6I | GTAC | 2 cut(s) | 1207, 1407 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 48, 83, 487, 522 |
| CviAII | CATG | 4 cut(s) | 241, 277, 1381, 1411 |
| CviQI | GTAC | 2 cut(s) | 1207, 1407 |
| DdeI | CTNAG | 7 cut(s) | 513, 804, 1065, 1110, 1152, 1294, 1335 |
| DpnI | GATC | 4 cut(s) | 246, 318, 801, 1446 |
| DpnII | GATC | 4 cut(s) | 244, 316, 799, 1444 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 858 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 858 |
| EaeI | YGGCCR | 2 cut(s) | 876, 1383 |
| EciI | GGCGGA | 3 cut(s) | 127, 189, 864 |
| Eco130I | CCWWGG | 2 cut(s) | 240, 1410 |
| Eco147I | AGGCCT | 2 cut(s) | 586, 713 |
| Eco24I | GRGCYC | 2 cut(s) | 688, 1427 |
| Eco31I | GGTCTC | 2 cut(s) | 516, 668 |
| Eco47I | GGWCC | 4 cut(s) | 56, 988, 1045, 1250 |
| Eco57I | CTGAAG | 2 cut(s) | 1061, 1067 |
| Eco88I | CYCGRG | 2 cut(s) | 470, 1229 |
| Eco91I | GGTNACC | 1 cut(s) | 574 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1460 |
| EcoO109I | RGGNCCY | 3 cut(s) | 684, 988, 1250 |
| EcoO65I | GGTNACC | 1 cut(s) | 574 |
| EcoRII | CCWGG | 1 cut(s) | 762 |
| EcoT14I | CCWWGG | 2 cut(s) | 240, 1410 |
| EcoT38I | GRGCYC | 2 cut(s) | 688, 1427 |
| ErhI | CCWWGG | 2 cut(s) | 240, 1410 |
| Esp3I | CGTCTC | 1 cut(s) | 1015 |
| FaeI | CATG | 4 cut(s) | 244, 280, 1384, 1414 |
| FaiI | YATR | 8 cut(s) | 34, 242, 278, 282, 950, 1031, 1382, 1412 |
| FaqI | GGGAC | 6 cut(s) | 846, 904, 1001, 1103, 1204, 1263 |
| FatI | CATG | 4 cut(s) | 240, 276, 1380, 1410 |
| FauI | CCCGC | 5 cut(s) | 440, 502, 695, 1080, 1376 |
| FbaI | TGATCA | 1 cut(s) | 1444 |
| FblI | GTMKAC | 2 cut(s) | 165, 872 |
| FokI | GGATG | 3 cut(s) | 203, 965, 1415 |
| FriOI | GRGCYC | 2 cut(s) | 688, 1427 |
| FspBI | CTAG | 6 cut(s) | 741, 839, 1019, 1052, 1257, 1452 |
| GlaI | GCGC | 5 cut(s) | 38, 182, 184, 391, 1372 |
| GsaI | CCCAGC | 2 cut(s) | 291, 439 |
| GsuI | CTGGAG | 1 cut(s) | 444 |
| HaeII | RGCGCY | 1 cut(s) | 40 |
| HaeIII | GGCC | 9 cut(s) | 299, 464, 586, 686, 704, 713, 762, 878, 1385 |
| HapII | CCGG | 4 cut(s) | 45, 444, 722, 1230 |
| HgaI | GACGC | 1 cut(s) | 233 |
| HhaI | GCGC | 5 cut(s) | 39, 183, 185, 392, 1373 |
| Hin1II | CATG | 4 cut(s) | 244, 280, 1384, 1414 |
| Hin6I | GCGC | 5 cut(s) | 37, 181, 183, 390, 1371 |
| HinP1I | GCGC | 5 cut(s) | 37, 181, 183, 390, 1371 |
| HincII | GTYRAC | 2 cut(s) | 166, 873 |
| HindII | GTYRAC | 2 cut(s) | 166, 873 |
| HpaII | CCGG | 4 cut(s) | 45, 444, 722, 1230 |
| Hpy166II | GTNNAC | 2 cut(s) | 166, 873 |
| Hpy188I | TCNGA | 9 cut(s) | 346, 516, 795, 937, 1168, 1323, 1360, 1444, 1449 |
| Hpy188III | TCNNGA | 2 cut(s) | 803, 1277 |
| Hpy8I | GTNNAC | 2 cut(s) | 166, 873 |
| Hpy99I | CGWCG | 2 cut(s) | 227, 877 |
| HpyAV | CCTTC | 6 cut(s) | 143, 469, 694, 1036, 1054, 1300 |
| HpyCH4III | ACNGT | 4 cut(s) | 64, 174, 310, 553 |
| HpyCH4IV | ACGT | 2 cut(s) | 1008, 1217 |
| HpyCH4V | TGCA | 6 cut(s) | 353, 460, 557, 662, 751, 1202 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 293, 599, 608, 668, 710, 715, 953, 1106 |
| HpyF3I | CTNAG | 7 cut(s) | 513, 804, 1065, 1110, 1152, 1294, 1335 |
| HpySE526I | ACGT | 2 cut(s) | 1008, 1217 |
| Hsp92II | CATG | 4 cut(s) | 244, 280, 1384, 1414 |
| HspAI | GCGC | 5 cut(s) | 37, 181, 183, 390, 1371 |
| KpnI | GGTACC | 1 cut(s) | 1410 |
| Ksp22I | TGATCA | 1 cut(s) | 1444 |
| Kzo9I | GATC | 4 cut(s) | 244, 316, 799, 1444 |
| LmnI | GCTCC | 4 cut(s) | 154, 425, 450, 565 |
| Lsp1109I | GCAGC | 3 cut(s) | 730, 763, 1214 |
| LweI | GCATC | 6 cut(s) | 351, 357, 391, 649, 658, 943 |
| MaeI | CTAG | 6 cut(s) | 741, 839, 1019, 1052, 1257, 1452 |
| MaeII | ACGT | 2 cut(s) | 1008, 1217 |
| MaeIII | GTNAC | 5 cut(s) | 75, 206, 547, 574, 1414 |
| MalI | GATC | 4 cut(s) | 246, 318, 801, 1446 |
| MbiI | CCGCTC | 2 cut(s) | 997, 1400 |
| MboI | GATC | 4 cut(s) | 244, 316, 799, 1444 |
| MboII | GAAGA | 3 cut(s) | 608, 665, 1073 |
| MflI | RGATCY | 1 cut(s) | 244 |
| MhlI | GDGCHC | 3 cut(s) | 495, 688, 1427 |
| MlsI | TGGCCA | 1 cut(s) | 1385 |
| MluCI | AATT | 3 cut(s) | 89, 254, 1362 |
| MluNI | TGGCCA | 1 cut(s) | 1385 |
| MlyI | GAGTC | 6 cut(s) | 846, 1085, 1193, 1244, 1325, 1336 |
| MmeI | TCCRAC | 2 cut(s) | 83, 543 |
| Mox20I | TGGCCA | 1 cut(s) | 1385 |
| MscI | TGGCCA | 1 cut(s) | 1385 |
| MseI | TTAA | 1 cut(s) | 99 |
| Msp20I | TGGCCA | 1 cut(s) | 1385 |
| MspA1I | CMGCKG | 4 cut(s) | 287, 960, 1087, 1339 |
| MspI | CCGG | 4 cut(s) | 45, 444, 722, 1230 |
| MspR9I | CCNGG | 3 cut(s) | 764, 1230, 1231 |
| Mva1269I | GAATGC | 1 cut(s) | 944 |
| MvaI | CCWGG | 1 cut(s) | 764 |
| MvnI | CGCG | 3 cut(s) | 183, 785, 1371 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 293, 599, 608, 668, 710, 715, 953, 1106 |
| NciI | CCSGG | 2 cut(s) | 1230, 1231 |
| NcoI | CCATGG | 2 cut(s) | 240, 1410 |
| NdeII | GATC | 4 cut(s) | 244, 316, 799, 1444 |
| NheI | GCTAGC | 1 cut(s) | 1256 |
| NlaIII | CATG | 4 cut(s) | 244, 280, 1384, 1414 |
| NmeAIII | GCCGAG | 1 cut(s) | 228 |
| NmuCI | GTSAC | 2 cut(s) | 574, 1414 |
| NspI | RCATGY | 1 cut(s) | 280 |
| PaqCI | CACCTGC | 2 cut(s) | 147, 562 |
| PauI | GCGCGC | 1 cut(s) | 181 |
| PceI | AGGCCT | 2 cut(s) | 586, 713 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 852, 861 |
| PctI | GAATGC | 1 cut(s) | 944 |
| PfeI | GAWTC | 4 cut(s) | 115, 194, 767, 1078 |
| PleI | GAGTC | 6 cut(s) | 846, 1085, 1192, 1243, 1325, 1336 |
| PpsI | GAGTC | 6 cut(s) | 846, 1085, 1192, 1243, 1325, 1336 |
| PpuMI | RGGWCCY | 2 cut(s) | 988, 1250 |
| PshAI | GACNNNNGTC | 1 cut(s) | 916 |
| Psp5II | RGGWCCY | 2 cut(s) | 988, 1250 |
| Psp6I | CCWGG | 1 cut(s) | 762 |
| PspEI | GGTNACC | 1 cut(s) | 574 |
| PspFI | CCCAGC | 2 cut(s) | 287, 435 |
| PspGI | CCWGG | 1 cut(s) | 762 |
| PspOMI | GGGCCC | 1 cut(s) | 684 |
| PspPI | GGNCC | 7 cut(s) | 56, 298, 684, 685, 988, 1045, 1250 |
| PspPPI | RGGWCCY | 2 cut(s) | 988, 1250 |
| PstI | CTGCAG | 2 cut(s) | 355, 1204 |
| PstNI | CAGNNNCTG | 2 cut(s) | 328, 422 |
| PsuI | RGATCY | 1 cut(s) | 244 |
| PteI | GCGCGC | 1 cut(s) | 181 |
| RsaI | GTAC | 2 cut(s) | 1208, 1408 |
| RsaNI | GTAC | 2 cut(s) | 1207, 1407 |
| SalI | GTCGAC | 2 cut(s) | 164, 871 |
| SaqAI | TTAA | 1 cut(s) | 99 |
| Sau3AI | GATC | 4 cut(s) | 244, 316, 799, 1444 |
| Sau96I | GGNCC | 7 cut(s) | 56, 298, 684, 685, 988, 1045, 1250 |
| SchI | GAGTC | 6 cut(s) | 846, 1085, 1193, 1244, 1325, 1336 |
| ScrFI | CCNGG | 3 cut(s) | 764, 1230, 1231 |
| SduI | GDGCHC | 3 cut(s) | 495, 688, 1427 |
| SfaNI | GCATC | 6 cut(s) | 351, 357, 391, 649, 658, 943 |
| SfcI | CTRYAG | 3 cut(s) | 170, 351, 1200 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 710 |
| SinI | GGWCC | 4 cut(s) | 56, 988, 1045, 1250 |
| SmaI | CCCGGG | 1 cut(s) | 1231 |
| SmlI | CTYRAG | 4 cut(s) | 580, 923, 992, 1275 |
| SmoI | CTYRAG | 4 cut(s) | 580, 923, 992, 1275 |
| SpeI | ACTAGT | 1 cut(s) | 1051 |
| Sse9I | AATT | 3 cut(s) | 89, 254, 1362 |
| SseBI | AGGCCT | 2 cut(s) | 586, 713 |
| SspMI | CTAG | 6 cut(s) | 741, 839, 1019, 1052, 1257, 1452 |
| StuI | AGGCCT | 2 cut(s) | 586, 713 |
| StyD4I | CCNGG | 3 cut(s) | 762, 1228, 1229 |
| StyI | CCWWGG | 2 cut(s) | 240, 1410 |
| TaaI | ACNGT | 4 cut(s) | 64, 174, 310, 553 |
| TaiI | ACGT | 2 cut(s) | 1011, 1220 |
| TaqI | TCGA | 4 cut(s) | 165, 315, 855, 872 |
| TaqII | GACCGA | 2 cut(s) | 812, 858 |
| TasI | AATT | 3 cut(s) | 89, 254, 1362 |
| TauI | GCSGC | 9 cut(s) | 287, 299, 467, 571, 596, 631, 762, 963, 1100 |
| TfiI | GAWTC | 4 cut(s) | 115, 194, 767, 1078 |
| Tru1I | TTAA | 1 cut(s) | 99 |
| Tru9I | TTAA | 1 cut(s) | 99 |
| TscAI | CASTG | 5 cut(s) | 192, 333, 360, 604, 1267 |
| TseFI | GTSAC | 2 cut(s) | 574, 1414 |
| TseI | GCWGC | 3 cut(s) | 718, 751, 1202 |
| Tsp45I | GTSAC | 2 cut(s) | 574, 1414 |
| TspDTI | ATGAA | 1 cut(s) | 1369 |
| TspGWI | ACGGA | 1 cut(s) | 533 |
| TspMI | CCCGGG | 1 cut(s) | 1229 |
| TspRI | CASTG | 5 cut(s) | 192, 333, 360, 604, 1267 |
| VpaK11BI | GGWCC | 4 cut(s) | 56, 988, 1045, 1250 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1460 |
| XapI | RAATTY | 1 cut(s) | 1362 |
| XceI | RCATGY | 1 cut(s) | 280 |
| XmaI | CCCGGG | 1 cut(s) | 1229 |
| XmiI | GTMKAC | 2 cut(s) | 165, 872 |
| XspI | CTAG | 6 cut(s) | 741, 839, 1019, 1052, 1257, 1452 |