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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 729 |
| AatII | GACGTC | 1 cut(s) | 1380 |
| Acc16I | TGCGCA | 1 cut(s) | 1209 |
| Acc36I | ACCTGC | 2 cut(s) | 729, 1065 |
| AccB1I | GGYRCC | 4 cut(s) | 920, 1276, 1958, 2108 |
| AccBSI | CCGCTC | 4 cut(s) | 559, 1543, 1570, 1624 |
| AccII | CGCG | 6 cut(s) | 552, 1242, 1406, 2100, 2102, 2207 |
| AclWI | GGATC | 2 cut(s) | 1770, 1789 |
| AcoI | YGGCCR | 1 cut(s) | 1947 |
| AcsI | RAATTY | 4 cut(s) | 899, 938, 1523, 2077 |
| AcuI | CTGAAG | 2 cut(s) | 725, 1784 |
| AcvI | CACGTG | 1 cut(s) | 76 |
| AcyI | GRCGYC | 5 cut(s) | 32, 921, 1377, 1959, 2015 |
| AfaI | GTAC | 4 cut(s) | 80, 111, 788, 1517 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 546, 597, 914, 1293, 1476, 1543, 1804, 1885, 2186 |
| AflIII | ACRYGT | 2 cut(s) | 75, 363 |
| AgeI | ACCGGT | 1 cut(s) | 1079 |
| AgsI | TTSAA | 8 cut(s) | 137, 155, 944, 1148, 1759, 1909, 1975, 1984 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1726 |
| AjiI | CACGTC | 1 cut(s) | 364 |
| AjnI | CCWGG | 6 cut(s) | 292, 816, 913, 960, 1613, 2160 |
| AleI | CACNNNNGTG | 1 cut(s) | 2114 |
| Alw21I | GWGCWC | 3 cut(s) | 170, 180, 515 |
| Alw26I | GTCTC | 6 cut(s) | 340, 961, 1272, 1655, 1734, 2071 |
| AlwI | GGATC | 2 cut(s) | 1770, 1789 |
| Ama87I | CYCGRG | 3 cut(s) | 173, 337, 1538 |
| ApaI | GGGCCC | 1 cut(s) | 1423 |
| ApeKI | GCWGC | 7 cut(s) | 533, 791, 1017, 1210, 1627, 1814, 1834 |
| ApoI | RAATTY | 4 cut(s) | 899, 938, 1523, 2077 |
| AsiGI | ACCGGT | 1 cut(s) | 1079 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 767, 948 |
| AspLEI | GCGC | 9 cut(s) | 552, 578, 923, 1210, 1242, 1961, 1997, 2102, 2209 |
| AspS9I | GGNCC | 5 cut(s) | 674, 825, 982, 1419, 1420 |
| AsuC2I | CCSGG | 2 cut(s) | 50, 726 |
| AsuII | TTCGAA | 1 cut(s) | 272 |
| AsuNHI | GCTAGC | 2 cut(s) | 320, 2057 |
| AvaI | CYCGRG | 3 cut(s) | 173, 337, 1538 |
| AvaII | GGWCC | 1 cut(s) | 825 |
| BaeGI | GKGCMC | 3 cut(s) | 75, 1230, 1423 |
| BalI | TGGCCA | 1 cut(s) | 1949 |
| BanI | GGYRCC | 4 cut(s) | 920, 1276, 1958, 2108 |
| BanII | GRGCYC | 2 cut(s) | 515, 1423 |
| BbrPI | CACGTG | 1 cut(s) | 76 |
| BbsI | GAAGAC | 2 cut(s) | 167, 1415 |
| Bbv12I | GWGCWC | 3 cut(s) | 170, 180, 515 |
| BbvI | GCAGC | 7 cut(s) | 520, 778, 1004, 1222, 1639, 1801, 1846 |
| BccI | CCATC | 8 cut(s) | 200, 310, 641, 1421, 1678, 1933, 2099, 2180 |
| BceAI | ACGGC | 5 cut(s) | 97, 128, 892, 1880, 2017 |
| BciT130I | CCWGG | 6 cut(s) | 294, 818, 915, 962, 1615, 2162 |
| BclI | TGATCA | 1 cut(s) | 1165 |
| BcnI | CCSGG | 2 cut(s) | 50, 726 |
| BcoDI | GTCTC | 6 cut(s) | 340, 961, 1272, 1655, 1734, 2071 |
| BfaI | CTAG | 6 cut(s) | 117, 321, 446, 516, 582, 2058 |
| BfmI | CTRYAG | 5 cut(s) | 461, 654, 792, 884, 1464 |
| BfoI | RGCGCY | 4 cut(s) | 579, 924, 1962, 1998 |
| BfuAI | ACCTGC | 2 cut(s) | 729, 1065 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 1901, 2038 |
| BglII | AGATCT | 2 cut(s) | 235, 970 |
| BlpI | GCTNAGC | 2 cut(s) | 2028, 2123 |
| BmcAI | AGTACT | 1 cut(s) | 1517 |
| Bme1390I | CCNGG | 8 cut(s) | 50, 294, 726, 818, 915, 962, 1615, 2162 |
| Bme18I | GGWCC | 1 cut(s) | 825 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1726 |
| BmeT110I | CYCGRG | 3 cut(s) | 173, 337, 1538 |
| BmgBI | CACGTC | 1 cut(s) | 364 |
| BmgT120I | GGNCC | 5 cut(s) | 674, 825, 982, 1419, 1420 |
| BmrFI | CCNGG | 8 cut(s) | 50, 294, 726, 818, 915, 962, 1615, 2162 |
| BmrI | ACTGGG | 1 cut(s) | 2014 |
| BmsI | GCATC | 2 cut(s) | 990, 2191 |
| BmtI | GCTAGC | 2 cut(s) | 324, 2061 |
| BmuI | ACTGGG | 1 cut(s) | 2014 |
| BpiI | GAAGAC | 2 cut(s) | 167, 1415 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1177, 1209, 2035, 2067 |
| BpmI | CTGGAG | 4 cut(s) | 1173, 1319, 1637, 1757 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1631 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 2028, 2123 |
| Bpu14I | TTCGAA | 1 cut(s) | 272 |
| BpuEI | CTTGAG | 1 cut(s) | 1610 |
| BpuMI | CCSGG | 2 cut(s) | 50, 726 |
| Bsa29I | ATCGAT | 1 cut(s) | 128 |
| BsaAI | YACGTR | 1 cut(s) | 76 |
| BsaBI | GATNNNNATC | 1 cut(s) | 124 |
| BsaHI | GRCGYC | 5 cut(s) | 32, 921, 1377, 1959, 2015 |
| BsaI | GGTCTC | 2 cut(s) | 340, 1655 |
| BsaWI | WCCGGW | 1 cut(s) | 1079 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 546, 597, 914, 1293, 1476, 1543, 1804, 1885, 2186 |
| Bse118I | RCCGGY | 3 cut(s) | 1079, 1178, 2179 |
| Bse1I | ACTGG | 4 cut(s) | 498, 779, 1139, 2020 |
| Bse3DI | GCAATG | 3 cut(s) | 99, 492, 1287 |
| Bse8I | GATNNNNATC | 1 cut(s) | 124 |
| BseBI | CCWGG | 6 cut(s) | 294, 818, 915, 962, 1615, 2162 |
| BseCI | ATCGAT | 1 cut(s) | 128 |
| BseGI | GGATG | 2 cut(s) | 2110, 2191 |
| BseJI | GATNNNNATC | 1 cut(s) | 124 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 546, 597, 914, 1293, 1476, 1543, 1804, 1885, 2186 |
| BseMI | GCAATG | 3 cut(s) | 99, 492, 1287 |
| BseMII | CTCAG | 4 cut(s) | 53, 1611, 1745, 2019 |
| BseNI | ACTGG | 4 cut(s) | 498, 779, 1139, 2020 |
| BseRI | GAGGAG | 2 cut(s) | 1652, 1883 |
| BseSI | GKGCMC | 3 cut(s) | 75, 1230, 1423 |
| BseXI | GCAGC | 7 cut(s) | 520, 778, 1004, 1222, 1639, 1801, 1846 |
| BseYI | CCCAGC | 2 cut(s) | 1663, 1857 |
| BsgI | GTGCAG | 2 cut(s) | 1505, 1853 |
| Bsh1236I | CGCG | 6 cut(s) | 552, 1242, 1406, 2100, 2102, 2207 |
| Bsh1285I | CGRYCG | 2 cut(s) | 132, 2170 |
| BshNI | GGYRCC | 4 cut(s) | 920, 1276, 1958, 2108 |
| BshTI | ACCGGT | 1 cut(s) | 1079 |
| BshVI | ATCGAT | 1 cut(s) | 128 |
| BsiEI | CGRYCG | 2 cut(s) | 132, 2170 |
| BsiHKAI | GWGCWC | 3 cut(s) | 170, 180, 515 |
| BsiHKCI | CYCGRG | 3 cut(s) | 173, 337, 1538 |
| BsiSI | CCGG | 5 cut(s) | 49, 726, 1080, 1179, 2180 |
| BsiWI | CGTACG | 1 cut(s) | 109 |
| BslFI | GGGAC | 2 cut(s) | 1231, 2002 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 546, 597, 914, 1293, 1476, 1543, 1804, 1885, 2186 |
| BsmAI | GTCTC | 6 cut(s) | 340, 961, 1272, 1655, 1734, 2071 |
| BsmFI | GGGAC | 2 cut(s) | 1231, 2002 |
| Bso31I | GGTCTC | 2 cut(s) | 340, 1655 |
| BsoBI | CYCGRG | 3 cut(s) | 173, 337, 1538 |
| Bsp119I | TTCGAA | 1 cut(s) | 272 |
| Bsp120I | GGGCCC | 1 cut(s) | 1419 |
| Bsp1286I | GDGCHC | 6 cut(s) | 75, 170, 180, 515, 1230, 1423 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 2028, 2123 |
| Bsp19I | CCATGG | 1 cut(s) | 2112 |
| BspCNI | CTCAG | 4 cut(s) | 52, 1612, 1744, 2020 |
| BspDI | ATCGAT | 1 cut(s) | 128 |
| BspFNI | CGCG | 6 cut(s) | 552, 1242, 1406, 2100, 2102, 2207 |
| BspHI | TCATGA | 1 cut(s) | 799 |
| BspMAI | CTGCAG | 3 cut(s) | 658, 796, 888 |
| BspMI | ACCTGC | 2 cut(s) | 729, 1065 |
| BspOI | GCTAGC | 2 cut(s) | 324, 2061 |
| BspPI | GGATC | 2 cut(s) | 1770, 1789 |
| BspQI | GCTCTTC | 1 cut(s) | 549 |
| BspT104I | TTCGAA | 1 cut(s) | 272 |
| BspT107I | GGYRCC | 4 cut(s) | 920, 1276, 1958, 2108 |
| BspTNI | GGTCTC | 2 cut(s) | 340, 1655 |
| BsrBI | CCGCTC | 4 cut(s) | 559, 1543, 1570, 1624 |
| BsrDI | GCAATG | 3 cut(s) | 99, 492, 1287 |
| BsrFI | RCCGGY | 3 cut(s) | 1079, 1178, 2179 |
| BsrI | ACTGG | 4 cut(s) | 498, 779, 1139, 2020 |
| BssAI | RCCGGY | 3 cut(s) | 1079, 1178, 2179 |
| BssNI | GRCGYC | 5 cut(s) | 32, 921, 1377, 1959, 2015 |
| BssT1I | CCWWGG | 5 cut(s) | 473, 1120, 1455, 1950, 2112 |
| Bst2UI | CCWGG | 6 cut(s) | 294, 818, 915, 962, 1615, 2162 |
| Bst6I | CTCTTC | 4 cut(s) | 549, 612, 1005, 1860 |
| BstACI | GRCGYC | 5 cut(s) | 32, 921, 1377, 1959, 2015 |
| BstBAI | YACGTR | 1 cut(s) | 76 |
| BstBI | TTCGAA | 1 cut(s) | 272 |
| BstDEI | CTNAG | 7 cut(s) | 39, 303, 1620, 1631, 1731, 2028, 2123 |
| BstDSI | CCRYGG | 3 cut(s) | 832, 1896, 2112 |
| BstF5I | GGATG | 2 cut(s) | 2110, 2191 |
| BstFNI | CGCG | 6 cut(s) | 552, 1242, 1406, 2100, 2102, 2207 |
| BstH2I | RGCGCY | 4 cut(s) | 579, 924, 1962, 1998 |
| BstHHI | GCGC | 9 cut(s) | 552, 578, 923, 1210, 1242, 1961, 1997, 2102, 2209 |
| BstMAI | GTCTC | 6 cut(s) | 340, 961, 1272, 1655, 1734, 2071 |
| BstMCI | CGRYCG | 2 cut(s) | 132, 2170 |
| BstNI | CCWGG | 6 cut(s) | 294, 818, 915, 962, 1615, 2162 |
| BstSCI | CCNGG | 8 cut(s) | 48, 292, 724, 816, 913, 960, 1613, 2160 |
| BstSFI | CTRYAG | 5 cut(s) | 461, 654, 792, 884, 1464 |
| BstSLI | GKGCMC | 3 cut(s) | 75, 1230, 1423 |
| BstUI | CGCG | 6 cut(s) | 552, 1242, 1406, 2100, 2102, 2207 |
| BstV1I | GCAGC | 7 cut(s) | 520, 778, 1004, 1222, 1639, 1801, 1846 |
| BstV2I | GAAGAC | 2 cut(s) | 167, 1415 |
| BstX2I | RGATCY | 3 cut(s) | 235, 970, 1794 |
| BstYI | RGATCY | 3 cut(s) | 235, 970, 1794 |
| Bsu15I | ATCGAT | 1 cut(s) | 128 |
| BsuTUI | ATCGAT | 1 cut(s) | 128 |
| BtgI | CCRYGG | 3 cut(s) | 832, 1896, 2112 |
| BtgZI | GCGATG | 1 cut(s) | 1949 |
| BtrI | CACGTC | 1 cut(s) | 364 |
| BtsCI | GGATG | 2 cut(s) | 2110, 2191 |
| BtsI | GCAGTG | 4 cut(s) | 91, 349, 651, 893 |
| BtsIMutI | CAGTG | 5 cut(s) | 91, 349, 651, 786, 893 |
| BveI | ACCTGC | 2 cut(s) | 729, 1065 |
| CciI | TCATGA | 1 cut(s) | 799 |
| CfoI | GCGC | 9 cut(s) | 552, 578, 923, 1210, 1242, 1961, 1997, 2102, 2209 |
| Cfr10I | RCCGGY | 3 cut(s) | 1079, 1178, 2179 |
| Cfr13I | GGNCC | 5 cut(s) | 674, 825, 982, 1419, 1420 |
| ClaI | ATCGAT | 1 cut(s) | 128 |
| CseI | GACGC | 5 cut(s) | 21, 313, 395, 1412, 2004 |
| Csp6I | GTAC | 4 cut(s) | 79, 110, 787, 1516 |
| CspAI | ACCGGT | 1 cut(s) | 1079 |
| CviAII | CATG | 6 cut(s) | 67, 419, 494, 800, 953, 2113 |
| CviQI | GTAC | 4 cut(s) | 79, 110, 787, 1516 |
| DdeI | CTNAG | 7 cut(s) | 39, 303, 1620, 1631, 1731, 2028, 2123 |
| DinI | GGCGCC | 2 cut(s) | 922, 1960 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1726 |
| EaeI | YGGCCR | 1 cut(s) | 1947 |
| Eam1104I | CTCTTC | 4 cut(s) | 549, 612, 1005, 1860 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1726 |
| EarI | CTCTTC | 4 cut(s) | 549, 612, 1005, 1860 |
| EciI | GGCGGA | 5 cut(s) | 852, 1060, 1440, 1703, 1820 |
| Ecl136II | GAGCTC | 1 cut(s) | 513 |
| Eco130I | CCWWGG | 5 cut(s) | 473, 1120, 1455, 1950, 2112 |
| Eco147I | AGGCCT | 3 cut(s) | 148, 767, 1321 |
| Eco24I | GRGCYC | 2 cut(s) | 515, 1423 |
| Eco31I | GGTCTC | 2 cut(s) | 340, 1655 |
| Eco32I | GATATC | 1 cut(s) | 451 |
| Eco47I | GGWCC | 1 cut(s) | 825 |
| Eco53kI | GAGCTC | 1 cut(s) | 513 |
| Eco57I | CTGAAG | 2 cut(s) | 725, 1784 |
| Eco72I | CACGTG | 1 cut(s) | 76 |
| Eco88I | CYCGRG | 3 cut(s) | 173, 337, 1538 |
| EcoICRI | GAGCTC | 1 cut(s) | 513 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1419 |
| EcoRI | GAATTC | 1 cut(s) | 1523 |
| EcoRII | CCWGG | 6 cut(s) | 292, 816, 913, 960, 1613, 2160 |
| EcoRV | GATATC | 1 cut(s) | 451 |
| EcoT14I | CCWWGG | 5 cut(s) | 473, 1120, 1455, 1950, 2112 |
| EcoT38I | GRGCYC | 2 cut(s) | 515, 1423 |
| EgeI | GGCGCC | 2 cut(s) | 922, 1960 |
| EheI | GGCGCC | 2 cut(s) | 922, 1960 |
| ErhI | CCWWGG | 5 cut(s) | 473, 1120, 1455, 1950, 2112 |
| FaeI | CATG | 6 cut(s) | 70, 422, 497, 803, 956, 2116 |
| FaqI | GGGAC | 2 cut(s) | 1231, 2002 |
| FatI | CATG | 6 cut(s) | 66, 418, 493, 799, 952, 2112 |
| FauI | CCCGC | 9 cut(s) | 514, 661, 702, 958, 1175, 1430, 1536, 1854, 2105 |
| FbaI | TGATCA | 1 cut(s) | 1165 |
| FokI | GGATG | 2 cut(s) | 2117, 2198 |
| FriOI | GRGCYC | 2 cut(s) | 515, 1423 |
| FspBI | CTAG | 6 cut(s) | 117, 321, 446, 516, 582, 2058 |
| FspI | TGCGCA | 1 cut(s) | 1209 |
| GlaI | GCGC | 9 cut(s) | 551, 577, 922, 1209, 1241, 1960, 1996, 2101, 2208 |
| GsaI | CCCAGC | 2 cut(s) | 1667, 1861 |
| GsuI | CTGGAG | 4 cut(s) | 1173, 1319, 1637, 1757 |
| HaeII | RGCGCY | 4 cut(s) | 579, 924, 1962, 1998 |
| HapII | CCGG | 5 cut(s) | 49, 726, 1080, 1179, 2180 |
| HgaI | GACGC | 5 cut(s) | 21, 313, 395, 1412, 2004 |
| HhaI | GCGC | 9 cut(s) | 552, 578, 923, 1210, 1242, 1961, 1997, 2102, 2209 |
| Hin1I | GRCGYC | 5 cut(s) | 32, 921, 1377, 1959, 2015 |
| Hin1II | CATG | 6 cut(s) | 70, 422, 497, 803, 956, 2116 |
| Hin6I | GCGC | 9 cut(s) | 550, 576, 921, 1208, 1240, 1959, 1995, 2100, 2207 |
| HinP1I | GCGC | 9 cut(s) | 550, 576, 921, 1208, 1240, 1959, 1995, 2100, 2207 |
| HincII | GTYRAC | 2 cut(s) | 697, 1110 |
| HindII | GTYRAC | 2 cut(s) | 697, 1110 |
| HinfI | GANTC | 8 cut(s) | 214, 350, 398, 1048, 1244, 1502, 1601, 1808 |
| HpaII | CCGG | 5 cut(s) | 49, 726, 1080, 1179, 2180 |
| Hpy166II | GTNNAC | 3 cut(s) | 79, 697, 1110 |
| Hpy188III | TCNNGA | 8 cut(s) | 152, 337, 800, 935, 1499, 1528, 1654, 1783 |
| Hpy8I | GTNNAC | 3 cut(s) | 79, 697, 1110 |
| Hpy99I | CGWCG | 7 cut(s) | 37, 329, 913, 1133, 1331, 1379, 1382 |
| HpyCH4IV | ACGT | 4 cut(s) | 75, 363, 1377, 1692 |
| HpyF3I | CTNAG | 7 cut(s) | 39, 303, 1620, 1631, 1731, 2028, 2123 |
| HpySE526I | ACGT | 4 cut(s) | 75, 363, 1377, 1692 |
| Hsp92I | GRCGYC | 5 cut(s) | 32, 921, 1377, 1959, 2015 |
| Hsp92II | CATG | 6 cut(s) | 70, 422, 497, 803, 956, 2116 |
| HspAI | GCGC | 9 cut(s) | 550, 576, 921, 1208, 1240, 1959, 1995, 2100, 2207 |
| KasI | GGCGCC | 2 cut(s) | 920, 1958 |
| KroI | GCCGGC | 1 cut(s) | 1178 |
| KroNI | GCCGGC | 1 cut(s) | 1180 |
| Ksp22I | TGATCA | 1 cut(s) | 1165 |
| LguI | GCTCTTC | 1 cut(s) | 549 |
| LmnI | GCTCC | 9 cut(s) | 1121, 1130, 1154, 1185, 1300, 1453, 1660, 1738, 2056 |
| Lsp1109I | GCAGC | 7 cut(s) | 520, 778, 1004, 1222, 1639, 1801, 1846 |
| LweI | GCATC | 2 cut(s) | 990, 2191 |
| MaeI | CTAG | 6 cut(s) | 117, 321, 446, 516, 582, 2058 |
| MaeII | ACGT | 4 cut(s) | 75, 363, 1377, 1692 |
| MaeIII | GTNAC | 3 cut(s) | 22, 989, 1459 |
| MbiI | CCGCTC | 4 cut(s) | 559, 1543, 1570, 1624 |
| MflI | RGATCY | 3 cut(s) | 235, 970, 1794 |
| MhlI | GDGCHC | 6 cut(s) | 75, 170, 180, 515, 1230, 1423 |
| MlsI | TGGCCA | 1 cut(s) | 1949 |
| MluCI | AATT | 8 cut(s) | 9, 642, 899, 938, 1088, 1523, 1788, 2077 |
| MluNI | TGGCCA | 1 cut(s) | 1949 |
| Mly113I | GGCGCC | 2 cut(s) | 921, 1959 |
| MlyI | GAGTC | 4 cut(s) | 392, 1253, 1496, 1610 |
| MmeI | TCCRAC | 3 cut(s) | 852, 1152, 1821 |
| Mox20I | TGGCCA | 1 cut(s) | 1949 |
| MroNI | GCCGGC | 1 cut(s) | 1178 |
| MroXI | GAANNNNTTC | 2 cut(s) | 767, 948 |
| MscI | TGGCCA | 1 cut(s) | 1949 |
| MseI | TTAA | 3 cut(s) | 44, 198, 660 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1563, 2114 |
| Msp20I | TGGCCA | 1 cut(s) | 1949 |
| MspA1I | CMGCKG | 5 cut(s) | 593, 1213, 1735, 1837, 1861 |
| MspI | CCGG | 5 cut(s) | 49, 726, 1080, 1179, 2180 |
| MspR9I | CCNGG | 8 cut(s) | 50, 294, 726, 818, 915, 962, 1615, 2162 |
| MvaI | CCWGG | 6 cut(s) | 294, 818, 915, 962, 1615, 2162 |
| MvnI | CGCG | 6 cut(s) | 552, 1242, 1406, 2100, 2102, 2207 |
| NaeI | GCCGGC | 1 cut(s) | 1180 |
| NarI | GGCGCC | 2 cut(s) | 921, 1959 |
| NciI | CCSGG | 2 cut(s) | 50, 726 |
| NcoI | CCATGG | 1 cut(s) | 2112 |
| NgoMIV | GCCGGC | 1 cut(s) | 1178 |
| NheI | GCTAGC | 2 cut(s) | 320, 2057 |
| NlaIII | CATG | 6 cut(s) | 70, 422, 497, 803, 956, 2116 |
| NmeAIII | GCCGAG | 1 cut(s) | 1537 |
| NmuCI | GTSAC | 1 cut(s) | 1459 |
| NsbI | TGCGCA | 1 cut(s) | 1209 |
| NspV | TTCGAA | 1 cut(s) | 272 |
| OliI | CACNNNNGTG | 1 cut(s) | 2114 |
| PaeR7I | CTCGAG | 2 cut(s) | 173, 337 |
| PagI | TCATGA | 1 cut(s) | 799 |
| PaqCI | CACCTGC | 1 cut(s) | 729 |
| PceI | AGGCCT | 3 cut(s) | 148, 767, 1321 |
| PciSI | GCTCTTC | 1 cut(s) | 549 |
| PdiI | GCCGGC | 1 cut(s) | 1180 |
| PdmI | GAANNNNTTC | 2 cut(s) | 767, 948 |
| PfeI | GAWTC | 4 cut(s) | 214, 350, 1048, 1808 |
| Pfl23II | CGTACG | 1 cut(s) | 109 |
| PinAI | ACCGGT | 1 cut(s) | 1079 |
| Ple19I | CGATCG | 2 cut(s) | 132, 2170 |
| PleI | GAGTC | 4 cut(s) | 392, 1252, 1496, 1609 |
| PluTI | GGCGCC | 2 cut(s) | 924, 1962 |
| PmaCI | CACGTG | 1 cut(s) | 76 |
| PmlI | CACGTG | 1 cut(s) | 76 |
| PpsI | GAGTC | 4 cut(s) | 392, 1252, 1496, 1609 |
| Ppu21I | YACGTR | 1 cut(s) | 76 |
| Psp124BI | GAGCTC | 1 cut(s) | 515 |
| Psp6I | CCWGG | 6 cut(s) | 292, 816, 913, 960, 1613, 2160 |
| PspCI | CACGTG | 1 cut(s) | 76 |
| PspFI | CCCAGC | 2 cut(s) | 1663, 1857 |
| PspGI | CCWGG | 6 cut(s) | 292, 816, 913, 960, 1613, 2160 |
| PspLI | CGTACG | 1 cut(s) | 109 |
| PspOMI | GGGCCC | 1 cut(s) | 1419 |
| PspPI | GGNCC | 5 cut(s) | 674, 825, 982, 1419, 1420 |
| PspXI | VCTCGAGB | 1 cut(s) | 173 |
| PstI | CTGCAG | 3 cut(s) | 658, 796, 888 |
| PsuI | RGATCY | 3 cut(s) | 235, 970, 1794 |
| PvuI | CGATCG | 2 cut(s) | 132, 2170 |
| PvuII | CAGCTG | 2 cut(s) | 1213, 1735 |
| RsaI | GTAC | 4 cut(s) | 80, 111, 788, 1517 |
| RsaNI | GTAC | 4 cut(s) | 79, 110, 787, 1516 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1563, 2114 |
| SacI | GAGCTC | 1 cut(s) | 515 |
| SapI | GCTCTTC | 1 cut(s) | 549 |
| SaqAI | TTAA | 3 cut(s) | 44, 198, 660 |
| Sau96I | GGNCC | 5 cut(s) | 674, 825, 982, 1419, 1420 |
| ScaI | AGTACT | 1 cut(s) | 1517 |
| SchI | GAGTC | 4 cut(s) | 392, 1253, 1496, 1610 |
| ScrFI | CCNGG | 8 cut(s) | 50, 294, 726, 818, 915, 962, 1615, 2162 |
| SduI | GDGCHC | 6 cut(s) | 75, 170, 180, 515, 1230, 1423 |
| SfaNI | GCATC | 2 cut(s) | 990, 2191 |
| SfcI | CTRYAG | 5 cut(s) | 461, 654, 792, 884, 1464 |
| SfoI | GGCGCC | 2 cut(s) | 922, 1960 |
| Sfr274I | CTCGAG | 2 cut(s) | 173, 337 |
| SfuI | TTCGAA | 1 cut(s) | 272 |
| SgrAI | CRCCGGYG | 1 cut(s) | 2179 |
| SinI | GGWCC | 1 cut(s) | 825 |
| SlaI | CTCGAG | 2 cut(s) | 173, 337 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1563, 2114 |
| SmlI | CTYRAG | 3 cut(s) | 173, 337, 1589 |
| SmoI | CTYRAG | 3 cut(s) | 173, 337, 1589 |
| Sse9I | AATT | 8 cut(s) | 9, 642, 899, 938, 1088, 1523, 1788, 2077 |
| SseBI | AGGCCT | 3 cut(s) | 148, 767, 1321 |
| SspDI | GGCGCC | 2 cut(s) | 920, 1958 |
| SspMI | CTAG | 6 cut(s) | 117, 321, 446, 516, 582, 2058 |
| SstI | GAGCTC | 1 cut(s) | 515 |
| StuI | AGGCCT | 3 cut(s) | 148, 767, 1321 |
| StyD4I | CCNGG | 8 cut(s) | 48, 292, 724, 816, 913, 960, 1613, 2160 |
| StyI | CCWWGG | 5 cut(s) | 473, 1120, 1455, 1950, 2112 |
| TaiI | ACGT | 4 cut(s) | 78, 366, 1380, 1695 |
| TasI | AATT | 8 cut(s) | 9, 642, 899, 938, 1088, 1523, 1788, 2077 |
| TatI | WGTACW | 1 cut(s) | 1515 |
| TfiI | GAWTC | 4 cut(s) | 214, 350, 1048, 1808 |
| Tru1I | TTAA | 3 cut(s) | 44, 198, 660 |
| Tru9I | TTAA | 3 cut(s) | 44, 198, 660 |
| TscAI | CASTG | 5 cut(s) | 91, 349, 658, 786, 893 |
| TseFI | GTSAC | 1 cut(s) | 1459 |
| TseI | GCWGC | 7 cut(s) | 533, 791, 1017, 1210, 1627, 1814, 1834 |
| Tsp45I | GTSAC | 1 cut(s) | 1459 |
| TspDTI | ATGAA | 7 cut(s) | 55, 219, 678, 760, 788, 941, 1547 |
| TspGWI | ACGGA | 1 cut(s) | 682 |
| TspRI | CASTG | 5 cut(s) | 91, 349, 658, 786, 893 |
| VpaK11BI | GGWCC | 1 cut(s) | 825 |
| XapI | RAATTY | 4 cut(s) | 899, 938, 1523, 2077 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 885, 1294, 1681 |
| XhoI | CTCGAG | 2 cut(s) | 173, 337 |
| XmnI | GAANNNNTTC | 2 cut(s) | 767, 948 |
| XspI | CTAG | 6 cut(s) | 117, 321, 446, 516, 582, 2058 |
| ZraI | GACGTC | 1 cut(s) | 1378 |
| ZrmI | AGTACT | 1 cut(s) | 1517 |