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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 275, 311 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 321 |
| AccBSI | CCGCTC | 3 cut(s) | 19, 31, 435 |
| AclI | AACGTT | 1 cut(s) | 6 |
| AclWI | GGATC | 2 cut(s) | 87, 106 |
| AcoI | YGGCCR | 2 cut(s) | 87, 204 |
| AcuI | CTGAAG | 2 cut(s) | 101, 651 |
| AcyI | GRCGYC | 2 cut(s) | 312, 485 |
| AfaI | GTAC | 3 cut(s) | 242, 348, 382 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 18, 75, 76, 121, 202, 321, 499, 535 |
| AflIII | ACRYGT | 1 cut(s) | 63 |
| AgsI | TTSAA | 1 cut(s) | 425 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 561 |
| AjnI | CCWGG | 1 cut(s) | 412 |
| AluBI | AGCT | 3 cut(s) | 52, 284, 365 |
| AluI | AGCT | 3 cut(s) | 52, 284, 365 |
| Alw26I | GTCTC | 2 cut(s) | 510, 548 |
| AlwI | GGATC | 2 cut(s) | 87, 106 |
| Ama87I | CYCGRG | 3 cut(s) | 436, 534, 573 |
| AoxI | GGCC | 4 cut(s) | 87, 204, 270, 612 |
| ApeKI | GCWGC | 4 cut(s) | 73, 263, 298, 301 |
| AspLEI | GCGC | 1 cut(s) | 314 |
| AsuC2I | CCSGG | 2 cut(s) | 535, 536 |
| AsuHPI | GGTGA | 1 cut(s) | 176 |
| AvaI | CYCGRG | 3 cut(s) | 436, 534, 573 |
| BaeGI | GKGCMC | 1 cut(s) | 280 |
| BanI | GGYRCC | 2 cut(s) | 275, 311 |
| BanII | GRGCYC | 1 cut(s) | 433 |
| BbvCI | CCTCAGC | 1 cut(s) | 186 |
| BbvI | GCAGC | 4 cut(s) | 60, 275, 285, 313 |
| BccI | CCATC | 2 cut(s) | 361, 536 |
| BceAI | ACGGC | 2 cut(s) | 180, 579 |
| BciT130I | CCWGG | 1 cut(s) | 414 |
| BcnI | CCSGG | 2 cut(s) | 535, 536 |
| BcoDI | GTCTC | 2 cut(s) | 510, 548 |
| BfaI | CTAG | 3 cut(s) | 158, 281, 561 |
| BfmI | CTRYAG | 1 cut(s) | 299 |
| BfoI | RGCGCY | 1 cut(s) | 315 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 140 |
| Bme1390I | CCNGG | 3 cut(s) | 414, 535, 536 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 561 |
| BmeT110I | CYCGRG | 3 cut(s) | 436, 534, 573 |
| BmiI | GGNNCC | 4 cut(s) | 277, 313, 430, 643 |
| BmrFI | CCNGG | 3 cut(s) | 414, 535, 536 |
| BmrI | ACTGGG | 2 cut(s) | 331, 487 |
| BmsI | GCATC | 2 cut(s) | 327, 616 |
| BmuI | ACTGGG | 2 cut(s) | 331, 487 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 633, 665 |
| BpmI | CTGGAG | 1 cut(s) | 74 |
| Bpu10I | CCTNAGC | 1 cut(s) | 186 |
| BpuMI | CCSGG | 2 cut(s) | 535, 536 |
| BsaHI | GRCGYC | 2 cut(s) | 312, 485 |
| BsaI | GGTCTC | 1 cut(s) | 548 |
| BsaJI | CCNNGG | 5 cut(s) | 93, 412, 498, 534, 574 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 18, 75, 76, 121, 202, 321, 499, 535 |
| Bse118I | RCCGGY | 1 cut(s) | 272 |
| Bse1I | ACTGG | 4 cut(s) | 326, 341, 493, 618 |
| BseBI | CCWGG | 1 cut(s) | 414 |
| BseDI | CCNNGG | 5 cut(s) | 93, 412, 498, 534, 574 |
| BseGI | GGATG | 2 cut(s) | 547, 601 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 18, 75, 76, 121, 202, 321, 499, 535 |
| BseMII | CTCAG | 3 cut(s) | 135, 177, 491 |
| BseNI | ACTGG | 4 cut(s) | 326, 341, 493, 618 |
| BseRI | GAGGAG | 1 cut(s) | 203 |
| BseSI | GKGCMC | 1 cut(s) | 280 |
| BseX3I | CGGCCG | 1 cut(s) | 204 |
| BseXI | GCAGC | 4 cut(s) | 60, 275, 285, 313 |
| BseYI | CCCAGC | 1 cut(s) | 512 |
| Bsh1285I | CGRYCG | 1 cut(s) | 207 |
| BshFI | GGCC | 4 cut(s) | 89, 206, 272, 614 |
| BshNI | GGYRCC | 2 cut(s) | 275, 311 |
| BsiEI | CGRYCG | 1 cut(s) | 207 |
| BsiHKCI | CYCGRG | 3 cut(s) | 436, 534, 573 |
| BsiSI | CCGG | 2 cut(s) | 273, 535 |
| BslFI | GGGAC | 2 cut(s) | 52, 549 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 18, 75, 76, 121, 202, 321, 499, 535 |
| BsmAI | GTCTC | 2 cut(s) | 510, 548 |
| BsmFI | GGGAC | 2 cut(s) | 52, 549 |
| BsnI | GGCC | 4 cut(s) | 89, 206, 272, 614 |
| Bso31I | GGTCTC | 1 cut(s) | 548 |
| BsoBI | CYCGRG | 3 cut(s) | 436, 534, 573 |
| Bsp1286I | GDGCHC | 2 cut(s) | 280, 433 |
| Bsp143I | GATC | 3 cut(s) | 79, 111, 147 |
| BspANI | GGCC | 4 cut(s) | 89, 206, 272, 614 |
| BspCNI | CTCAG | 3 cut(s) | 136, 178, 490 |
| BspLI | GGNNCC | 4 cut(s) | 277, 313, 430, 643 |
| BspMAI | CTGCAG | 1 cut(s) | 303 |
| BspPI | GGATC | 2 cut(s) | 87, 106 |
| BspT107I | GGYRCC | 2 cut(s) | 275, 311 |
| BspTNI | GGTCTC | 1 cut(s) | 548 |
| BsrBI | CCGCTC | 3 cut(s) | 19, 31, 435 |
| BsrFI | RCCGGY | 1 cut(s) | 272 |
| BsrI | ACTGG | 4 cut(s) | 326, 341, 493, 618 |
| BssAI | RCCGGY | 1 cut(s) | 272 |
| BssECI | CCNNGG | 5 cut(s) | 93, 412, 498, 534, 574 |
| BssMI | GATC | 3 cut(s) | 79, 111, 147 |
| BssNI | GRCGYC | 2 cut(s) | 312, 485 |
| BssT1I | CCWWGG | 1 cut(s) | 93 |
| Bst2UI | CCWGG | 1 cut(s) | 414 |
| Bst4CI | ACNGT | 1 cut(s) | 550 |
| BstACI | GRCGYC | 2 cut(s) | 312, 485 |
| BstC8I | GCNNGC | 3 cut(s) | 175, 433, 612 |
| BstDEI | CTNAG | 4 cut(s) | 144, 186, 357, 477 |
| BstF5I | GGATG | 2 cut(s) | 547, 601 |
| BstH2I | RGCGCY | 1 cut(s) | 315 |
| BstHHI | GCGC | 1 cut(s) | 314 |
| BstKTI | GATC | 3 cut(s) | 82, 114, 150 |
| BstMAI | GTCTC | 2 cut(s) | 510, 548 |
| BstMBI | GATC | 3 cut(s) | 79, 111, 147 |
| BstMCI | CGRYCG | 1 cut(s) | 207 |
| BstNI | CCWGG | 1 cut(s) | 414 |
| BstNSI | RCATGY | 1 cut(s) | 67 |
| BstSCI | CCNGG | 3 cut(s) | 412, 533, 534 |
| BstSFI | CTRYAG | 1 cut(s) | 299 |
| BstSLI | GKGCMC | 1 cut(s) | 280 |
| BstV1I | GCAGC | 4 cut(s) | 60, 275, 285, 313 |
| BstX2I | RGATCY | 1 cut(s) | 111 |
| BstYI | RGATCY | 1 cut(s) | 111 |
| BstZI | CGGCCG | 1 cut(s) | 204 |
| BsuRI | GGCC | 4 cut(s) | 89, 206, 272, 614 |
| BtsCI | GGATG | 2 cut(s) | 547, 601 |
| BtsI | GCAGTG | 1 cut(s) | 402 |
| BtsIMutI | CAGTG | 3 cut(s) | 251, 402, 625 |
| Cac8I | GCNNGC | 3 cut(s) | 175, 433, 612 |
| CciNI | GCGGCCGC | 1 cut(s) | 204 |
| CfoI | GCGC | 1 cut(s) | 314 |
| Cfr10I | RCCGGY | 1 cut(s) | 272 |
| Cfr9I | CCCGGG | 1 cut(s) | 534 |
| CseI | GACGC | 2 cut(s) | 321, 493 |
| Csp6I | GTAC | 3 cut(s) | 241, 347, 381 |
| CviAII | CATG | 1 cut(s) | 64 |
| CviQI | GTAC | 3 cut(s) | 241, 347, 381 |
| DdeI | CTNAG | 4 cut(s) | 144, 186, 357, 477 |
| DinI | GGCGCC | 1 cut(s) | 313 |
| DpnI | GATC | 3 cut(s) | 81, 113, 149 |
| DpnII | GATC | 3 cut(s) | 79, 111, 147 |
| DriI | GACNNNNNGTC | 1 cut(s) | 561 |
| EaeI | YGGCCR | 2 cut(s) | 87, 204 |
| EagI | CGGCCG | 1 cut(s) | 204 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 561 |
| EciI | GGCGGA | 4 cut(s) | 118, 357, 471, 554 |
| EclXI | CGGCCG | 1 cut(s) | 204 |
| Eco130I | CCWWGG | 1 cut(s) | 93 |
| Eco24I | GRGCYC | 1 cut(s) | 433 |
| Eco31I | GGTCTC | 1 cut(s) | 548 |
| Eco52I | CGGCCG | 1 cut(s) | 204 |
| Eco57I | CTGAAG | 2 cut(s) | 101, 651 |
| Eco88I | CYCGRG | 3 cut(s) | 436, 534, 573 |
| EcoRII | CCWGG | 1 cut(s) | 412 |
| EcoT14I | CCWWGG | 1 cut(s) | 93 |
| EcoT38I | GRGCYC | 1 cut(s) | 433 |
| EgeI | GGCGCC | 1 cut(s) | 313 |
| EheI | GGCGCC | 1 cut(s) | 313 |
| ErhI | CCWWGG | 1 cut(s) | 93 |
| FaeI | CATG | 1 cut(s) | 67 |
| FaiI | YATR | 2 cut(s) | 65, 223 |
| FaqI | GGGAC | 2 cut(s) | 52, 549 |
| FatI | CATG | 1 cut(s) | 63 |
| FauI | CCCGC | 4 cut(s) | 69, 114, 437, 440 |
| FokI | GGATG | 2 cut(s) | 554, 588 |
| FriOI | GRGCYC | 1 cut(s) | 433 |
| FspBI | CTAG | 3 cut(s) | 158, 281, 561 |
| GlaI | GCGC | 1 cut(s) | 313 |
| GsaI | CCCAGC | 1 cut(s) | 516 |
| GsuI | CTGGAG | 1 cut(s) | 74 |
| HaeII | RGCGCY | 1 cut(s) | 315 |
| HaeIII | GGCC | 4 cut(s) | 89, 206, 272, 614 |
| HapII | CCGG | 2 cut(s) | 273, 535 |
| HgaI | GACGC | 2 cut(s) | 321, 493 |
| HhaI | GCGC | 1 cut(s) | 314 |
| Hin1I | GRCGYC | 2 cut(s) | 312, 485 |
| Hin1II | CATG | 1 cut(s) | 67 |
| Hin6I | GCGC | 1 cut(s) | 312 |
| HinP1I | GCGC | 1 cut(s) | 312 |
| HinfI | GANTC | 3 cut(s) | 125, 218, 473 |
| HpaII | CCGG | 2 cut(s) | 273, 535 |
| HphI | GGTGA | 1 cut(s) | 176 |
| Hpy166II | GTNNAC | 2 cut(s) | 529, 599 |
| Hpy188I | TCNGA | 2 cut(s) | 499, 583 |
| Hpy8I | GTNNAC | 2 cut(s) | 529, 599 |
| Hpy99I | CGWCG | 1 cut(s) | 337 |
| HpyAV | CCTTC | 6 cut(s) | 125, 241, 262, 301, 419, 626 |
| HpyCH4III | ACNGT | 1 cut(s) | 550 |
| HpyCH4IV | ACGT | 1 cut(s) | 6 |
| HpyCH4V | TGCA | 1 cut(s) | 301 |
| HpyF3I | CTNAG | 4 cut(s) | 144, 186, 357, 477 |
| HpySE526I | ACGT | 1 cut(s) | 6 |
| Hsp92I | GRCGYC | 2 cut(s) | 312, 485 |
| Hsp92II | CATG | 1 cut(s) | 67 |
| HspAI | GCGC | 1 cut(s) | 312 |
| KasI | GGCGCC | 1 cut(s) | 311 |
| Kzo9I | GATC | 3 cut(s) | 79, 111, 147 |
| LmnI | GCTCC | 5 cut(s) | 28, 55, 370, 428, 641 |
| Lsp1109I | GCAGC | 4 cut(s) | 60, 275, 285, 313 |
| LweI | GCATC | 2 cut(s) | 327, 616 |
| MaeI | CTAG | 3 cut(s) | 158, 281, 561 |
| MaeII | ACGT | 1 cut(s) | 6 |
| MalI | GATC | 3 cut(s) | 81, 113, 149 |
| MbiI | CCGCTC | 3 cut(s) | 19, 31, 435 |
| MboI | GATC | 3 cut(s) | 79, 111, 147 |
| MboII | GAAGA | 1 cut(s) | 112 |
| MflI | RGATCY | 1 cut(s) | 111 |
| MhlI | GDGCHC | 2 cut(s) | 280, 433 |
| Mly113I | GGCGCC | 1 cut(s) | 312 |
| MlyI | GAGTC | 3 cut(s) | 134, 227, 467 |
| MnlI | CCTC | 8 cut(s) | 154, 175, 181, 409, 418, 493, 569, 659 |
| MseI | TTAA | 1 cut(s) | 108 |
| MspA1I | CMGCKG | 4 cut(s) | 121, 212, 236, 481 |
| MspI | CCGG | 2 cut(s) | 273, 535 |
| MspR9I | CCNGG | 3 cut(s) | 414, 535, 536 |
| MvaI | CCWGG | 1 cut(s) | 414 |
| NarI | GGCGCC | 1 cut(s) | 312 |
| NciI | CCSGG | 2 cut(s) | 535, 536 |
| NdeII | GATC | 3 cut(s) | 79, 111, 147 |
| NlaIII | CATG | 1 cut(s) | 67 |
| NlaIV | GGNNCC | 4 cut(s) | 277, 313, 430, 643 |
| NotI | GCGGCCGC | 1 cut(s) | 204 |
| NspI | RCATGY | 1 cut(s) | 67 |
| PciI | ACATGT | 1 cut(s) | 63 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 321 |
| PleI | GAGTC | 3 cut(s) | 133, 226, 467 |
| PluTI | GGCGCC | 1 cut(s) | 315 |
| PpsI | GAGTC | 3 cut(s) | 133, 226, 467 |
| PscI | ACATGT | 1 cut(s) | 63 |
| Psp1406I | AACGTT | 1 cut(s) | 6 |
| Psp6I | CCWGG | 1 cut(s) | 412 |
| PspFI | CCCAGC | 1 cut(s) | 512 |
| PspGI | CCWGG | 1 cut(s) | 412 |
| PspN4I | GGNNCC | 4 cut(s) | 277, 313, 430, 643 |
| PstI | CTGCAG | 1 cut(s) | 303 |
| PsuI | RGATCY | 1 cut(s) | 111 |
| RsaI | GTAC | 3 cut(s) | 242, 348, 382 |
| RsaNI | GTAC | 3 cut(s) | 241, 347, 381 |
| SaqAI | TTAA | 1 cut(s) | 108 |
| Sau3AI | GATC | 3 cut(s) | 79, 111, 147 |
| SchI | GAGTC | 3 cut(s) | 134, 227, 467 |
| ScrFI | CCNGG | 3 cut(s) | 414, 535, 536 |
| SduI | GDGCHC | 2 cut(s) | 280, 433 |
| SetI | ASST | 7 cut(s) | 9, 54, 286, 367, 504, 637, 651 |
| SfaNI | GCATC | 2 cut(s) | 327, 616 |
| SfcI | CTRYAG | 1 cut(s) | 299 |
| SfoI | GGCGCC | 1 cut(s) | 313 |
| SmaI | CCCGGG | 1 cut(s) | 536 |
| SspDI | GGCGCC | 1 cut(s) | 311 |
| SspMI | CTAG | 3 cut(s) | 158, 281, 561 |
| StyD4I | CCNGG | 3 cut(s) | 412, 533, 534 |
| StyI | CCWWGG | 1 cut(s) | 93 |
| TaaI | ACNGT | 1 cut(s) | 550 |
| TaiI | ACGT | 1 cut(s) | 9 |
| TaqI | TCGA | 1 cut(s) | 335 |
| TaqII | GACCGA | 1 cut(s) | 272 |
| TatI | WGTACW | 1 cut(s) | 240 |
| TauI | GCSGC | 9 cut(s) | 22, 92, 134, 157, 206, 209, 212, 398, 617 |
| Tru1I | TTAA | 1 cut(s) | 108 |
| Tru9I | TTAA | 1 cut(s) | 108 |
| TscAI | CASTG | 3 cut(s) | 258, 409, 625 |
| TseI | GCWGC | 4 cut(s) | 73, 263, 298, 301 |
| TspMI | CCCGGG | 1 cut(s) | 534 |
| TspRI | CASTG | 3 cut(s) | 258, 409, 625 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 321 |
| XceI | RCATGY | 1 cut(s) | 67 |
| XmaI | CCCGGG | 1 cut(s) | 534 |
| XspI | CTAG | 3 cut(s) | 158, 281, 561 |