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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 639 |
| AccB1I | GGYRCC | 2 cut(s) | 647, 818 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 657 |
| AccBSI | CCGCTC | 1 cut(s) | 845 |
| AccI | GTMKAC | 2 cut(s) | 276, 318 |
| AciI | CCGC | 8 cut(s) | 86, 253, 312, 599, 678, 711, 748, 843 |
| AclWI | GGATC | 1 cut(s) | 436 |
| AcoI | YGGCCR | 2 cut(s) | 348, 461 |
| AcvI | CACGTG | 1 cut(s) | 104 |
| AcyI | GRCGYC | 4 cut(s) | 194, 228, 315, 648 |
| AfaI | GTAC | 1 cut(s) | 784 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 657, 807 |
| AjnI | CCWGG | 5 cut(s) | 247, 509, 680, 806, 870 |
| AleI | CACNNNNGTG | 1 cut(s) | 65 |
| AluBI | AGCT | 4 cut(s) | 25, 40, 356, 521 |
| AluI | AGCT | 4 cut(s) | 25, 40, 356, 521 |
| Alw21I | GWGCWC | 1 cut(s) | 700 |
| Alw26I | GTCTC | 3 cut(s) | 150, 367, 710 |
| AlwI | GGATC | 1 cut(s) | 436 |
| Ama87I | CYCGRG | 1 cut(s) | 846 |
| AoxI | GGCC | 4 cut(s) | 166, 348, 461, 798 |
| ApeKI | GCWGC | 3 cut(s) | 233, 614, 617 |
| AspLEI | GCGC | 1 cut(s) | 650 |
| AspS9I | GGNCC | 3 cut(s) | 166, 628, 728 |
| AsuHPI | GGTGA | 6 cut(s) | 79, 107, 277, 293, 496, 673 |
| AvaI | CYCGRG | 1 cut(s) | 846 |
| AvaII | GGWCC | 2 cut(s) | 628, 728 |
| BanI | GGYRCC | 2 cut(s) | 647, 818 |
| BanII | GRGCYC | 1 cut(s) | 119 |
| BbrPI | CACGTG | 1 cut(s) | 104 |
| Bbv12I | GWGCWC | 1 cut(s) | 700 |
| BbvI | GCAGC | 3 cut(s) | 220, 601, 604 |
| BccI | CCATC | 4 cut(s) | 209, 365, 491, 586 |
| BceAI | ACGGC | 1 cut(s) | 99 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 523, 557 |
| BciT130I | CCWGG | 5 cut(s) | 249, 511, 682, 808, 872 |
| BcoDI | GTCTC | 3 cut(s) | 150, 367, 710 |
| BfaI | CTAG | 2 cut(s) | 494, 515 |
| BfoI | RGCGCY | 1 cut(s) | 651 |
| BfuAI | ACCTGC | 1 cut(s) | 639 |
| BisI | GCNGC | 5 cut(s) | 87, 234, 313, 615, 618 |
| BlpI | GCTNAGC | 1 cut(s) | 41 |
| BlsI | GCNGC | 5 cut(s) | 88, 235, 314, 616, 619 |
| Bme1390I | CCNGG | 5 cut(s) | 249, 511, 682, 808, 872 |
| Bme18I | GGWCC | 2 cut(s) | 628, 728 |
| BmeT110I | CYCGRG | 1 cut(s) | 846 |
| BmgT120I | GGNCC | 3 cut(s) | 166, 628, 728 |
| BmiI | GGNNCC | 3 cut(s) | 288, 649, 820 |
| BmrFI | CCNGG | 5 cut(s) | 249, 511, 682, 808, 872 |
| BmrI | ACTGGG | 1 cut(s) | 667 |
| BmsI | GCATC | 1 cut(s) | 258 |
| BmuI | ACTGGG | 1 cut(s) | 667 |
| BpmI | CTGGAG | 2 cut(s) | 273, 378 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 41 |
| BpuEI | CTTGAG | 2 cut(s) | 41, 688 |
| Bsa29I | ATCGAT | 1 cut(s) | 431 |
| BsaAI | YACGTR | 1 cut(s) | 104 |
| BsaHI | GRCGYC | 4 cut(s) | 194, 228, 315, 648 |
| BsaJI | CCNNGG | 6 cut(s) | 205, 247, 248, 480, 807, 822 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 319, 345, 349, 375, 458, 488, 742, 772 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 657, 807 |
| Bse1I | ACTGG | 4 cut(s) | 108, 290, 326, 662 |
| Bse3DI | GCAATG | 1 cut(s) | 96 |
| BseBI | CCWGG | 5 cut(s) | 249, 511, 682, 808, 872 |
| BseCI | ATCGAT | 1 cut(s) | 431 |
| BseDI | CCNNGG | 6 cut(s) | 205, 247, 248, 480, 807, 822 |
| BseGI | GGATG | 1 cut(s) | 201 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 657, 807 |
| BseMI | GCAATG | 1 cut(s) | 96 |
| BseMII | CTCAG | 4 cut(s) | 513, 681, 758, 867 |
| BseNI | ACTGG | 4 cut(s) | 108, 290, 326, 662 |
| BseRI | GAGGAG | 1 cut(s) | 343 |
| BseXI | GCAGC | 3 cut(s) | 220, 601, 604 |
| BshFI | GGCC | 4 cut(s) | 168, 350, 463, 800 |
| BshNI | GGYRCC | 2 cut(s) | 647, 818 |
| BshVI | ATCGAT | 1 cut(s) | 431 |
| BsiHKAI | GWGCWC | 1 cut(s) | 700 |
| BsiHKCI | CYCGRG | 1 cut(s) | 846 |
| BsiSI | CCGG | 4 cut(s) | 177, 351, 366, 464 |
| BslFI | GGGAC | 3 cut(s) | 455, 655, 763 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 657, 807 |
| BsmAI | GTCTC | 3 cut(s) | 150, 367, 710 |
| BsmFI | GGGAC | 3 cut(s) | 455, 655, 763 |
| BsnI | GGCC | 4 cut(s) | 168, 350, 463, 800 |
| BsoBI | CYCGRG | 1 cut(s) | 846 |
| Bsp1286I | GDGCHC | 2 cut(s) | 119, 700 |
| Bsp143I | GATC | 3 cut(s) | 386, 428, 856 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 41 |
| BspACI | CCGC | 8 cut(s) | 86, 253, 312, 599, 678, 711, 748, 843 |
| BspANI | GGCC | 4 cut(s) | 168, 350, 463, 800 |
| BspCNI | CTCAG | 4 cut(s) | 514, 682, 757, 866 |
| BspDI | ATCGAT | 1 cut(s) | 431 |
| BspLI | GGNNCC | 3 cut(s) | 288, 649, 820 |
| BspMI | ACCTGC | 1 cut(s) | 639 |
| BspPI | GGATC | 1 cut(s) | 436 |
| BspT107I | GGYRCC | 2 cut(s) | 647, 818 |
| BsrBI | CCGCTC | 1 cut(s) | 845 |
| BsrDI | GCAATG | 1 cut(s) | 96 |
| BsrI | ACTGG | 4 cut(s) | 108, 290, 326, 662 |
| BssECI | CCNNGG | 6 cut(s) | 205, 247, 248, 480, 807, 822 |
| BssMI | GATC | 3 cut(s) | 386, 428, 856 |
| BssNI | GRCGYC | 4 cut(s) | 194, 228, 315, 648 |
| Bst2UI | CCWGG | 5 cut(s) | 249, 511, 682, 808, 872 |
| Bst4CI | ACNGT | 5 cut(s) | 64, 224, 281, 446, 826 |
| Bst6I | CTCTTC | 1 cut(s) | 482 |
| BstACI | GRCGYC | 4 cut(s) | 194, 228, 315, 648 |
| BstBAI | YACGTR | 1 cut(s) | 104 |
| BstC8I | GCNNGC | 1 cut(s) | 585 |
| BstDEI | CTNAG | 5 cut(s) | 41, 522, 690, 744, 853 |
| BstDSI | CCRYGG | 1 cut(s) | 822 |
| BstEII | GGTNACC | 1 cut(s) | 95 |
| BstF5I | GGATG | 1 cut(s) | 201 |
| BstH2I | RGCGCY | 1 cut(s) | 651 |
| BstHHI | GCGC | 1 cut(s) | 650 |
| BstKTI | GATC | 3 cut(s) | 389, 431, 859 |
| BstMAI | GTCTC | 3 cut(s) | 150, 367, 710 |
| BstMBI | GATC | 3 cut(s) | 386, 428, 856 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 605, 614 |
| BstNI | CCWGG | 5 cut(s) | 249, 511, 682, 808, 872 |
| BstNSI | RCATGY | 1 cut(s) | 275 |
| BstPI | GGTNACC | 1 cut(s) | 95 |
| BstSCI | CCNGG | 5 cut(s) | 247, 509, 680, 806, 870 |
| BstV1I | GCAGC | 3 cut(s) | 220, 601, 604 |
| Bsu15I | ATCGAT | 1 cut(s) | 431 |
| BsuRI | GGCC | 4 cut(s) | 168, 350, 463, 800 |
| BsuTUI | ATCGAT | 1 cut(s) | 431 |
| BtgI | CCRYGG | 1 cut(s) | 822 |
| BtgZI | GCGATG | 1 cut(s) | 384 |
| BtsCI | GGATG | 1 cut(s) | 201 |
| BtsIMutI | CAGTG | 2 cut(s) | 115, 229 |
| BveI | ACCTGC | 1 cut(s) | 639 |
| Cac8I | GCNNGC | 1 cut(s) | 585 |
| CfoI | GCGC | 1 cut(s) | 650 |
| Cfr13I | GGNCC | 3 cut(s) | 166, 628, 728 |
| ClaI | ATCGAT | 1 cut(s) | 431 |
| CseI | GACGC | 4 cut(s) | 183, 217, 304, 657 |
| Csp6I | GTAC | 1 cut(s) | 783 |
| CviAII | CATG | 5 cut(s) | 170, 272, 589, 725, 793 |
| CviQI | GTAC | 1 cut(s) | 783 |
| DdeI | CTNAG | 5 cut(s) | 41, 522, 690, 744, 853 |
| DinI | GGCGCC | 1 cut(s) | 649 |
| DpnI | GATC | 3 cut(s) | 388, 430, 858 |
| DpnII | GATC | 3 cut(s) | 386, 428, 856 |
| EaeI | YGGCCR | 2 cut(s) | 348, 461 |
| Eam1104I | CTCTTC | 1 cut(s) | 482 |
| EarI | CTCTTC | 1 cut(s) | 482 |
| EciI | GGCGGA | 3 cut(s) | 268, 614, 667 |
| Eco24I | GRGCYC | 1 cut(s) | 119 |
| Eco47I | GGWCC | 2 cut(s) | 628, 728 |
| Eco72I | CACGTG | 1 cut(s) | 104 |
| Eco88I | CYCGRG | 1 cut(s) | 846 |
| Eco91I | GGTNACC | 1 cut(s) | 95 |
| EcoO65I | GGTNACC | 1 cut(s) | 95 |
| EcoRII | CCWGG | 5 cut(s) | 247, 509, 680, 806, 870 |
| EcoT22I | ATGCAT | 1 cut(s) | 273 |
| EcoT38I | GRGCYC | 1 cut(s) | 119 |
| EgeI | GGCGCC | 1 cut(s) | 649 |
| EheI | GGCGCC | 1 cut(s) | 649 |
| FaeI | CATG | 5 cut(s) | 173, 275, 592, 728, 796 |
| FaiI | YATR | 8 cut(s) | 171, 273, 579, 590, 726, 794, 816, 883 |
| FaqI | GGGAC | 3 cut(s) | 455, 655, 763 |
| FatI | CATG | 5 cut(s) | 169, 271, 588, 724, 792 |
| FblI | GTMKAC | 2 cut(s) | 276, 318 |
| Fnu4HI | GCNGC | 5 cut(s) | 87, 234, 313, 615, 618 |
| FokI | GGATG | 1 cut(s) | 188 |
| FriOI | GRGCYC | 1 cut(s) | 119 |
| Fsp4HI | GCNGC | 5 cut(s) | 87, 234, 313, 615, 618 |
| FspBI | CTAG | 2 cut(s) | 494, 515 |
| GlaI | GCGC | 1 cut(s) | 649 |
| GluI | GCNGC | 5 cut(s) | 87, 234, 313, 615, 618 |
| GsuI | CTGGAG | 2 cut(s) | 273, 378 |
| HaeII | RGCGCY | 1 cut(s) | 651 |
| HaeIII | GGCC | 4 cut(s) | 168, 350, 463, 800 |
| HapII | CCGG | 4 cut(s) | 177, 351, 366, 464 |
| HgaI | GACGC | 4 cut(s) | 183, 217, 304, 657 |
| HhaI | GCGC | 1 cut(s) | 650 |
| Hin1I | GRCGYC | 4 cut(s) | 194, 228, 315, 648 |
| Hin1II | CATG | 5 cut(s) | 173, 275, 592, 728, 796 |
| Hin6I | GCGC | 1 cut(s) | 648 |
| HinP1I | GCGC | 1 cut(s) | 648 |
| HincII | GTYRAC | 2 cut(s) | 277, 319 |
| HindII | GTYRAC | 2 cut(s) | 277, 319 |
| HinfI | GANTC | 7 cut(s) | 173, 360, 529, 740, 751, 865, 877 |
| HpaII | CCGG | 4 cut(s) | 177, 351, 366, 464 |
| HphI | GGTGA | 6 cut(s) | 79, 107, 277, 293, 496, 673 |
| Hpy166II | GTNNAC | 3 cut(s) | 81, 277, 319 |
| Hpy188III | TCNNGA | 1 cut(s) | 240 |
| Hpy8I | GTNNAC | 3 cut(s) | 81, 277, 319 |
| Hpy99I | CGWCG | 6 cut(s) | 199, 220, 233, 281, 320, 736 |
| HpyAV | CCTTC | 2 cut(s) | 548, 598 |
| HpyCH4III | ACNGT | 5 cut(s) | 64, 224, 281, 446, 826 |
| HpyCH4IV | ACGT | 1 cut(s) | 103 |
| HpyCH4V | TGCA | 2 cut(s) | 60, 271 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 605, 614 |
| HpyF3I | CTNAG | 5 cut(s) | 41, 522, 690, 744, 853 |
| HpySE526I | ACGT | 1 cut(s) | 103 |
| Hsp92I | GRCGYC | 4 cut(s) | 194, 228, 315, 648 |
| Hsp92II | CATG | 5 cut(s) | 173, 275, 592, 728, 796 |
| HspAI | GCGC | 1 cut(s) | 648 |
| KasI | GGCGCC | 1 cut(s) | 647 |
| Kzo9I | GATC | 3 cut(s) | 386, 428, 856 |
| LmnI | GCTCC | 2 cut(s) | 292, 353 |
| Lsp1109I | GCAGC | 3 cut(s) | 220, 601, 604 |
| LweI | GCATC | 1 cut(s) | 258 |
| MaeI | CTAG | 2 cut(s) | 494, 515 |
| MaeII | ACGT | 1 cut(s) | 103 |
| MaeIII | GTNAC | 2 cut(s) | 95, 826 |
| MalI | GATC | 3 cut(s) | 388, 430, 858 |
| MbiI | CCGCTC | 1 cut(s) | 845 |
| MboI | GATC | 3 cut(s) | 386, 428, 856 |
| MboII | GAAGA | 2 cut(s) | 396, 499 |
| MhlI | GDGCHC | 2 cut(s) | 119, 700 |
| MluCI | AATT | 1 cut(s) | 127 |
| Mly113I | GGCGCC | 1 cut(s) | 648 |
| MlyI | GAGTC | 4 cut(s) | 167, 369, 745, 874 |
| MmeI | TCCRAC | 4 cut(s) | 118, 240, 393, 755 |
| Mph1103I | ATGCAT | 1 cut(s) | 273 |
| MseI | TTAA | 1 cut(s) | 561 |
| MslI | CAYNNNNRTG | 1 cut(s) | 65 |
| MspA1I | CMGCKG | 1 cut(s) | 748 |
| MspI | CCGG | 4 cut(s) | 177, 351, 366, 464 |
| MspR9I | CCNGG | 5 cut(s) | 249, 511, 682, 808, 872 |
| MvaI | CCWGG | 5 cut(s) | 249, 511, 682, 808, 872 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 605, 614 |
| NarI | GGCGCC | 1 cut(s) | 648 |
| NdeII | GATC | 3 cut(s) | 386, 428, 856 |
| NlaIII | CATG | 5 cut(s) | 173, 275, 592, 728, 796 |
| NlaIV | GGNNCC | 3 cut(s) | 288, 649, 820 |
| NmuCI | GTSAC | 1 cut(s) | 95 |
| NsiI | ATGCAT | 1 cut(s) | 273 |
| NspI | RCATGY | 1 cut(s) | 275 |
| OliI | CACNNNNGTG | 1 cut(s) | 65 |
| PaeR7I | CTCGAG | 1 cut(s) | 846 |
| PasI | CCCWGGG | 1 cut(s) | 248 |
| PfeI | GAWTC | 3 cut(s) | 529, 740, 877 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 657 |
| PkrI | GCNGC | 5 cut(s) | 88, 235, 314, 616, 619 |
| PleI | GAGTC | 4 cut(s) | 167, 368, 745, 873 |
| PluTI | GGCGCC | 1 cut(s) | 651 |
| PmaCI | CACGTG | 1 cut(s) | 104 |
| PmlI | CACGTG | 1 cut(s) | 104 |
| PpsI | GAGTC | 4 cut(s) | 167, 368, 745, 873 |
| Ppu21I | YACGTR | 1 cut(s) | 104 |
| Psp6I | CCWGG | 5 cut(s) | 247, 509, 680, 806, 870 |
| PspCI | CACGTG | 1 cut(s) | 104 |
| PspEI | GGTNACC | 1 cut(s) | 95 |
| PspGI | CCWGG | 5 cut(s) | 247, 509, 680, 806, 870 |
| PspN4I | GGNNCC | 3 cut(s) | 288, 649, 820 |
| PspPI | GGNCC | 3 cut(s) | 166, 628, 728 |
| PspXI | VCTCGAGB | 1 cut(s) | 846 |
| RsaI | GTAC | 1 cut(s) | 784 |
| RsaNI | GTAC | 1 cut(s) | 783 |
| RseI | CAYNNNNRTG | 1 cut(s) | 65 |
| SalI | GTCGAC | 2 cut(s) | 275, 317 |
| SaqAI | TTAA | 1 cut(s) | 561 |
| SatI | GCNGC | 5 cut(s) | 87, 234, 313, 615, 618 |
| Sau3AI | GATC | 3 cut(s) | 386, 428, 856 |
| Sau96I | GGNCC | 3 cut(s) | 166, 628, 728 |
| SchI | GAGTC | 4 cut(s) | 167, 369, 745, 874 |
| ScrFI | CCNGG | 5 cut(s) | 249, 511, 682, 808, 872 |
| SduI | GDGCHC | 2 cut(s) | 119, 700 |
| SfaNI | GCATC | 1 cut(s) | 258 |
| SfoI | GGCGCC | 1 cut(s) | 649 |
| Sfr274I | CTCGAG | 1 cut(s) | 846 |
| SinI | GGWCC | 2 cut(s) | 628, 728 |
| SlaI | CTCGAG | 1 cut(s) | 846 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 65 |
| SmlI | CTYRAG | 3 cut(s) | 20, 703, 846 |
| SmoI | CTYRAG | 3 cut(s) | 20, 703, 846 |
| Sse9I | AATT | 1 cut(s) | 127 |
| SsiI | CCGC | 8 cut(s) | 86, 253, 312, 599, 678, 711, 748, 843 |
| SspDI | GGCGCC | 1 cut(s) | 647 |
| SspMI | CTAG | 2 cut(s) | 494, 515 |
| StyD4I | CCNGG | 5 cut(s) | 247, 509, 680, 806, 870 |
| TaaI | ACNGT | 5 cut(s) | 64, 224, 281, 446, 826 |
| TaiI | ACGT | 1 cut(s) | 106 |
| TaqI | TCGA | 6 cut(s) | 16, 239, 276, 318, 431, 847 |
| TasI | AATT | 1 cut(s) | 127 |
| TauI | GCSGC | 2 cut(s) | 89, 315 |
| TfiI | GAWTC | 3 cut(s) | 529, 740, 877 |
| Tru1I | TTAA | 1 cut(s) | 561 |
| Tru9I | TTAA | 1 cut(s) | 561 |
| TscAI | CASTG | 2 cut(s) | 115, 229 |
| TseFI | GTSAC | 1 cut(s) | 95 |
| TseI | GCWGC | 3 cut(s) | 233, 614, 617 |
| Tsp45I | GTSAC | 1 cut(s) | 95 |
| TspDTI | ATGAA | 1 cut(s) | 781 |
| TspGWI | ACGGA | 2 cut(s) | 551, 749 |
| TspRI | CASTG | 2 cut(s) | 115, 229 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 657 |
| VpaK11BI | GGWCC | 2 cut(s) | 628, 728 |
| XceI | RCATGY | 1 cut(s) | 275 |
| XhoI | CTCGAG | 1 cut(s) | 846 |
| XmiI | GTMKAC | 2 cut(s) | 276, 318 |
| XspI | CTAG | 2 cut(s) | 494, 515 |
| Zsp2I | ATGCAT | 1 cut(s) | 273 |