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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 699 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 626 |
| AccBSI | CCGCTC | 2 cut(s) | 758, 835 |
| AccII | CGCG | 7 cut(s) | 9, 18, 79, 103, 105, 135, 307 |
| AclI | AACGTT | 1 cut(s) | 655 |
| AclWI | GGATC | 5 cut(s) | 124, 137, 279, 291, 656 |
| AcoI | YGGCCR | 2 cut(s) | 123, 424 |
| AcsI | RAATTY | 1 cut(s) | 575 |
| AcuI | CTGAAG | 1 cut(s) | 324 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 306, 586, 626, 672, 688 |
| AgsI | TTSAA | 4 cut(s) | 575, 610, 660, 671 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 640, 672 |
| AluBI | AGCT | 2 cut(s) | 170, 687 |
| AluI | AGCT | 2 cut(s) | 170, 687 |
| Alw26I | GTCTC | 5 cut(s) | 272, 296, 396, 789, 800 |
| AlwI | GGATC | 5 cut(s) | 124, 137, 279, 291, 656 |
| Ama87I | CYCGRG | 1 cut(s) | 765 |
| AoxI | GGCC | 6 cut(s) | 123, 192, 424, 588, 690, 735 |
| ApeKI | GCWGC | 4 cut(s) | 85, 251, 512, 522 |
| ApoI | RAATTY | 1 cut(s) | 575 |
| AspLEI | GCGC | 7 cut(s) | 11, 20, 90, 105, 461, 746, 840 |
| AspS9I | GGNCC | 2 cut(s) | 493, 528 |
| AsuC2I | CCSGG | 2 cut(s) | 127, 160 |
| AsuHPI | GGTGA | 4 cut(s) | 46, 301, 557, 669 |
| AvaI | CYCGRG | 1 cut(s) | 765 |
| AvaII | GGWCC | 2 cut(s) | 493, 528 |
| BaeGI | GKGCMC | 1 cut(s) | 702 |
| BamHI | GGATCC | 1 cut(s) | 129 |
| BanI | GGYRCC | 1 cut(s) | 699 |
| BauI | CACGAG | 2 cut(s) | 275, 358 |
| BbvI | GCAGC | 4 cut(s) | 72, 263, 509, 524 |
| BccI | CCATC | 2 cut(s) | 630, 770 |
| BceAI | ACGGC | 1 cut(s) | 500 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 542, 576 |
| BciVI | GTATCC | 1 cut(s) | 475 |
| BcnI | CCSGG | 2 cut(s) | 127, 160 |
| BcoDI | GTCTC | 5 cut(s) | 272, 296, 396, 789, 800 |
| BfaI | CTAG | 2 cut(s) | 30, 171 |
| BfoI | RGCGCY | 2 cut(s) | 747, 841 |
| BfuI | GTATCC | 1 cut(s) | 475 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 82, 245, 408 |
| Bme1390I | CCNGG | 2 cut(s) | 127, 160 |
| Bme18I | GGWCC | 2 cut(s) | 493, 528 |
| BmeT110I | CYCGRG | 1 cut(s) | 765 |
| BmgT120I | GGNCC | 2 cut(s) | 493, 528 |
| BmiI | GGNNCC | 3 cut(s) | 131, 494, 701 |
| BmrFI | CCNGG | 2 cut(s) | 127, 160 |
| BmsI | GCATC | 2 cut(s) | 311, 409 |
| BpmI | CTGGAG | 3 cut(s) | 245, 724, 821 |
| BpuMI | CCSGG | 2 cut(s) | 127, 160 |
| BsaI | GGTCTC | 1 cut(s) | 789 |
| BsaJI | CCNNGG | 4 cut(s) | 77, 133, 487, 846 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 218, 248 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 306, 586, 626, 672, 688 |
| Bse118I | RCCGGY | 3 cut(s) | 11, 402, 422 |
| Bse3DI | GCAATG | 1 cut(s) | 393 |
| BseDI | CCNNGG | 4 cut(s) | 77, 133, 487, 846 |
| BseGI | GGATG | 2 cut(s) | 49, 424 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 306, 586, 626, 672, 688 |
| BseMI | GCAATG | 1 cut(s) | 393 |
| BseRI | GAGGAG | 3 cut(s) | 125, 786, 818 |
| BseSI | GKGCMC | 1 cut(s) | 702 |
| BseXI | GCAGC | 4 cut(s) | 72, 263, 509, 524 |
| Bsh1236I | CGCG | 7 cut(s) | 9, 18, 79, 103, 105, 135, 307 |
| Bsh1285I | CGRYCG | 1 cut(s) | 16 |
| BshFI | GGCC | 6 cut(s) | 125, 194, 426, 590, 692, 737 |
| BshNI | GGYRCC | 1 cut(s) | 699 |
| BsiEI | CGRYCG | 1 cut(s) | 16 |
| BsiHKCI | CYCGRG | 1 cut(s) | 765 |
| BsiSI | CCGG | 7 cut(s) | 12, 126, 159, 403, 423, 526, 596 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 306, 586, 626, 672, 688 |
| BsmAI | GTCTC | 5 cut(s) | 272, 296, 396, 789, 800 |
| BsmBI | CGTCTC | 1 cut(s) | 296 |
| BsnI | GGCC | 6 cut(s) | 125, 194, 426, 590, 692, 737 |
| Bso31I | GGTCTC | 1 cut(s) | 789 |
| BsoBI | CYCGRG | 1 cut(s) | 765 |
| Bsp1286I | GDGCHC | 1 cut(s) | 702 |
| Bsp143I | GATC | 5 cut(s) | 129, 210, 271, 296, 648 |
| BspANI | GGCC | 6 cut(s) | 125, 194, 426, 590, 692, 737 |
| BspFNI | CGCG | 7 cut(s) | 9, 18, 79, 103, 105, 135, 307 |
| BspHI | TCATGA | 2 cut(s) | 55, 175 |
| BspLI | GGNNCC | 3 cut(s) | 131, 494, 701 |
| BspPI | GGATC | 5 cut(s) | 124, 137, 279, 291, 656 |
| BspT107I | GGYRCC | 1 cut(s) | 699 |
| BspTNI | GGTCTC | 1 cut(s) | 789 |
| BsrBI | CCGCTC | 2 cut(s) | 758, 835 |
| BsrDI | GCAATG | 1 cut(s) | 393 |
| BsrFI | RCCGGY | 3 cut(s) | 11, 402, 422 |
| BssAI | RCCGGY | 3 cut(s) | 11, 402, 422 |
| BssECI | CCNNGG | 4 cut(s) | 77, 133, 487, 846 |
| BssMI | GATC | 5 cut(s) | 129, 210, 271, 296, 648 |
| BssSI | CACGAG | 2 cut(s) | 275, 358 |
| BssT1I | CCWWGG | 2 cut(s) | 487, 846 |
| Bst2BI | CACGAG | 2 cut(s) | 275, 358 |
| Bst4CI | ACNGT | 3 cut(s) | 203, 625, 675 |
| Bst6I | CTCTTC | 3 cut(s) | 63, 102, 332 |
| BstC8I | GCNNGC | 2 cut(s) | 241, 424 |
| BstDEI | CTNAG | 1 cut(s) | 810 |
| BstDSI | CCRYGG | 2 cut(s) | 77, 133 |
| BstEII | GGTNACC | 2 cut(s) | 545, 675 |
| BstF5I | GGATG | 2 cut(s) | 49, 424 |
| BstFNI | CGCG | 7 cut(s) | 9, 18, 79, 103, 105, 135, 307 |
| BstH2I | RGCGCY | 2 cut(s) | 747, 841 |
| BstHHI | GCGC | 7 cut(s) | 11, 20, 90, 105, 461, 746, 840 |
| BstKTI | GATC | 5 cut(s) | 132, 213, 274, 299, 651 |
| BstMAI | GTCTC | 5 cut(s) | 272, 296, 396, 789, 800 |
| BstMBI | GATC | 5 cut(s) | 129, 210, 271, 296, 648 |
| BstMCI | CGRYCG | 1 cut(s) | 16 |
| BstNSI | RCATGY | 1 cut(s) | 235 |
| BstPI | GGTNACC | 2 cut(s) | 545, 675 |
| BstSCI | CCNGG | 2 cut(s) | 125, 158 |
| BstSLI | GKGCMC | 1 cut(s) | 702 |
| BstUI | CGCG | 7 cut(s) | 9, 18, 79, 103, 105, 135, 307 |
| BstV1I | GCAGC | 4 cut(s) | 72, 263, 509, 524 |
| BstX2I | RGATCY | 1 cut(s) | 129 |
| BstYI | RGATCY | 1 cut(s) | 129 |
| BsuI | GTATCC | 1 cut(s) | 475 |
| BsuRI | GGCC | 6 cut(s) | 125, 194, 426, 590, 692, 737 |
| BtgI | CCRYGG | 2 cut(s) | 77, 133 |
| BtsCI | GGATG | 2 cut(s) | 49, 424 |
| Cac8I | GCNNGC | 2 cut(s) | 241, 424 |
| CciI | TCATGA | 2 cut(s) | 55, 175 |
| CfoI | GCGC | 7 cut(s) | 11, 20, 90, 105, 461, 746, 840 |
| Cfr10I | RCCGGY | 3 cut(s) | 11, 402, 422 |
| Cfr13I | GGNCC | 2 cut(s) | 493, 528 |
| Cfr42I | CCGCGG | 2 cut(s) | 80, 136 |
| CpoI | CGGWCCG | 1 cut(s) | 528 |
| CseI | GACGC | 2 cut(s) | 109, 313 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 553, 588 |
| CspI | CGGWCCG | 1 cut(s) | 528 |
| CviAII | CATG | 5 cut(s) | 56, 176, 196, 232, 719 |
| DdeI | CTNAG | 1 cut(s) | 810 |
| DpnI | GATC | 5 cut(s) | 131, 212, 273, 298, 650 |
| DpnII | GATC | 5 cut(s) | 129, 210, 271, 296, 648 |
| EaeI | YGGCCR | 2 cut(s) | 123, 424 |
| Eam1104I | CTCTTC | 3 cut(s) | 63, 102, 332 |
| EarI | CTCTTC | 3 cut(s) | 63, 102, 332 |
| EciI | GGCGGA | 2 cut(s) | 426, 517 |
| Eco130I | CCWWGG | 2 cut(s) | 487, 846 |
| Eco31I | GGTCTC | 1 cut(s) | 789 |
| Eco47I | GGWCC | 2 cut(s) | 493, 528 |
| Eco57I | CTGAAG | 1 cut(s) | 324 |
| Eco88I | CYCGRG | 1 cut(s) | 765 |
| Eco91I | GGTNACC | 2 cut(s) | 545, 675 |
| EcoO65I | GGTNACC | 2 cut(s) | 545, 675 |
| EcoRI | GAATTC | 1 cut(s) | 575 |
| EcoT14I | CCWWGG | 2 cut(s) | 487, 846 |
| ErhI | CCWWGG | 2 cut(s) | 487, 846 |
| Esp3I | CGTCTC | 1 cut(s) | 296 |
| FaeI | CATG | 5 cut(s) | 59, 179, 199, 235, 722 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 803, 835 |
| FatI | CATG | 5 cut(s) | 55, 175, 195, 231, 718 |
| FauI | CCCGC | 3 cut(s) | 57, 72, 236 |
| FauNDI | CATATG | 1 cut(s) | 568 |
| FokI | GGATG | 2 cut(s) | 56, 431 |
| FspBI | CTAG | 2 cut(s) | 30, 171 |
| GlaI | GCGC | 7 cut(s) | 10, 19, 89, 104, 460, 745, 839 |
| GsuI | CTGGAG | 3 cut(s) | 245, 724, 821 |
| HaeII | RGCGCY | 2 cut(s) | 747, 841 |
| HaeIII | GGCC | 6 cut(s) | 125, 194, 426, 590, 692, 737 |
| HapII | CCGG | 7 cut(s) | 12, 126, 159, 403, 423, 526, 596 |
| HgaI | GACGC | 2 cut(s) | 109, 313 |
| HhaI | GCGC | 7 cut(s) | 11, 20, 90, 105, 461, 746, 840 |
| Hin1II | CATG | 5 cut(s) | 59, 179, 199, 235, 722 |
| Hin6I | GCGC | 7 cut(s) | 9, 18, 88, 103, 459, 744, 838 |
| HinP1I | GCGC | 7 cut(s) | 9, 18, 88, 103, 459, 744, 838 |
| HinfI | GANTC | 1 cut(s) | 554 |
| HpaII | CCGG | 7 cut(s) | 12, 126, 159, 403, 423, 526, 596 |
| HphI | GGTGA | 4 cut(s) | 46, 301, 557, 669 |
| Hpy166II | GTNNAC | 1 cut(s) | 292 |
| Hpy188I | TCNGA | 3 cut(s) | 99, 301, 789 |
| Hpy188III | TCNNGA | 6 cut(s) | 56, 176, 187, 224, 275, 580 |
| Hpy8I | GTNNAC | 1 cut(s) | 292 |
| Hpy99I | CGWCG | 3 cut(s) | 103, 501, 586 |
| HpyAV | CCTTC | 3 cut(s) | 184, 440, 502 |
| HpyCH4III | ACNGT | 3 cut(s) | 203, 625, 675 |
| HpyCH4IV | ACGT | 1 cut(s) | 655 |
| HpyCH4V | TGCA | 1 cut(s) | 366 |
| HpyF3I | CTNAG | 1 cut(s) | 810 |
| HpySE526I | ACGT | 1 cut(s) | 655 |
| Hsp92II | CATG | 5 cut(s) | 59, 179, 199, 235, 722 |
| HspAI | GCGC | 7 cut(s) | 9, 18, 88, 103, 459, 744, 838 |
| KroI | GCCGGC | 1 cut(s) | 422 |
| KroNI | GCCGGC | 1 cut(s) | 424 |
| KspI | CCGCGG | 2 cut(s) | 80, 136 |
| Kzo9I | GATC | 5 cut(s) | 129, 210, 271, 296, 648 |
| LmnI | GCTCC | 1 cut(s) | 755 |
| Lsp1109I | GCAGC | 4 cut(s) | 72, 263, 509, 524 |
| LweI | GCATC | 2 cut(s) | 311, 409 |
| MaeI | CTAG | 2 cut(s) | 30, 171 |
| MaeII | ACGT | 1 cut(s) | 655 |
| MaeIII | GTNAC | 2 cut(s) | 545, 675 |
| MalI | GATC | 5 cut(s) | 131, 212, 273, 298, 650 |
| MbiI | CCGCTC | 2 cut(s) | 758, 835 |
| MboI | GATC | 5 cut(s) | 129, 210, 271, 296, 648 |
| MboII | GAAGA | 6 cut(s) | 80, 119, 145, 319, 517, 598 |
| MflI | RGATCY | 1 cut(s) | 129 |
| MhlI | GDGCHC | 1 cut(s) | 702 |
| MluCI | AATT | 2 cut(s) | 217, 575 |
| MlyI | GAGTC | 1 cut(s) | 548 |
| MmeI | TCCRAC | 1 cut(s) | 122 |
| MroNI | GCCGGC | 1 cut(s) | 422 |
| MspA1I | CMGCKG | 2 cut(s) | 79, 135 |
| MspI | CCGG | 7 cut(s) | 12, 126, 159, 403, 423, 526, 596 |
| MspR9I | CCNGG | 2 cut(s) | 127, 160 |
| MvnI | CGCG | 7 cut(s) | 9, 18, 79, 103, 105, 135, 307 |
| NaeI | GCCGGC | 1 cut(s) | 424 |
| NciI | CCSGG | 2 cut(s) | 127, 160 |
| NdeI | CATATG | 1 cut(s) | 568 |
| NdeII | GATC | 5 cut(s) | 129, 210, 271, 296, 648 |
| NgoMIV | GCCGGC | 1 cut(s) | 422 |
| NlaIII | CATG | 5 cut(s) | 59, 179, 199, 235, 722 |
| NlaIV | GGNNCC | 3 cut(s) | 131, 494, 701 |
| NmeAIII | GCCGAG | 4 cut(s) | 46, 232, 616, 668 |
| NmuCI | GTSAC | 2 cut(s) | 545, 675 |
| NspI | RCATGY | 1 cut(s) | 235 |
| PagI | TCATGA | 2 cut(s) | 55, 175 |
| PdiI | GCCGGC | 1 cut(s) | 424 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 626 |
| PleI | GAGTC | 1 cut(s) | 548 |
| PpsI | GAGTC | 1 cut(s) | 548 |
| Psp1406I | AACGTT | 1 cut(s) | 655 |
| PspEI | GGTNACC | 2 cut(s) | 545, 675 |
| PspN4I | GGNNCC | 3 cut(s) | 131, 494, 701 |
| PspPI | GGNCC | 2 cut(s) | 493, 528 |
| PsuI | RGATCY | 1 cut(s) | 129 |
| Rsr2I | CGGWCCG | 1 cut(s) | 528 |
| RsrII | CGGWCCG | 1 cut(s) | 528 |
| SacII | CCGCGG | 2 cut(s) | 80, 136 |
| Sau3AI | GATC | 5 cut(s) | 129, 210, 271, 296, 648 |
| Sau96I | GGNCC | 2 cut(s) | 493, 528 |
| SchI | GAGTC | 1 cut(s) | 548 |
| ScrFI | CCNGG | 2 cut(s) | 127, 160 |
| SduI | GDGCHC | 1 cut(s) | 702 |
| SetI | ASST | 9 cut(s) | 55, 172, 372, 539, 552, 615, 658, 689, 705 |
| SfaNI | GCATC | 2 cut(s) | 311, 409 |
| Sfr303I | CCGCGG | 2 cut(s) | 80, 136 |
| SgrBI | CCGCGG | 2 cut(s) | 80, 136 |
| SinI | GGWCC | 2 cut(s) | 493, 528 |
| Sse9I | AATT | 2 cut(s) | 217, 575 |
| SspMI | CTAG | 2 cut(s) | 30, 171 |
| StyD4I | CCNGG | 2 cut(s) | 125, 158 |
| StyI | CCWWGG | 2 cut(s) | 487, 846 |
| TaaI | ACNGT | 3 cut(s) | 203, 625, 675 |
| TaiI | ACGT | 1 cut(s) | 658 |
| TaqI | TCGA | 4 cut(s) | 186, 552, 634, 651 |
| TaqII | GACCGA | 1 cut(s) | 545 |
| TasI | AATT | 2 cut(s) | 217, 575 |
| TauI | GCSGC | 7 cut(s) | 79, 251, 411, 737, 761, 764, 838 |
| TseFI | GTSAC | 2 cut(s) | 545, 675 |
| TseI | GCWGC | 4 cut(s) | 85, 251, 512, 522 |
| Tsp45I | GTSAC | 2 cut(s) | 545, 675 |
| TspDTI | ATGAA | 2 cut(s) | 212, 592 |
| TspGWI | ACGGA | 3 cut(s) | 485, 599, 697 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 626 |
| VpaK11BI | GGWCC | 2 cut(s) | 493, 528 |
| XapI | RAATTY | 1 cut(s) | 575 |
| XceI | RCATGY | 1 cut(s) | 235 |
| XspI | CTAG | 2 cut(s) | 30, 171 |