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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 164 |
| AccB1I | GGYRCC | 2 cut(s) | 164, 464 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 544 |
| AccBSI | CCGCTC | 1 cut(s) | 53 |
| AccII | CGCG | 3 cut(s) | 170, 339, 436 |
| AcoI | YGGCCR | 1 cut(s) | 201 |
| AcyI | GRCGYC | 2 cut(s) | 465, 575 |
| AfaI | GTAC | 1 cut(s) | 166 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 111, 276, 298, 452, 544, 654 |
| AgeI | ACCGGT | 1 cut(s) | 399 |
| AluBI | AGCT | 1 cut(s) | 410 |
| AluI | AGCT | 1 cut(s) | 410 |
| Alw26I | GTCTC | 2 cut(s) | 590, 602 |
| Ama87I | CYCGRG | 3 cut(s) | 20, 147, 447 |
| AoxI | GGCC | 4 cut(s) | 201, 443, 618, 645 |
| AsiGI | ACCGGT | 1 cut(s) | 399 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 481 |
| Asp718I | GGTACC | 1 cut(s) | 164 |
| AspLEI | GCGC | 3 cut(s) | 309, 438, 467 |
| AspS9I | GGNCC | 2 cut(s) | 444, 618 |
| AsuC2I | CCSGG | 3 cut(s) | 148, 149, 240 |
| AsuHPI | GGTGA | 3 cut(s) | 140, 259, 389 |
| AvaI | CYCGRG | 3 cut(s) | 20, 147, 447 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 156, 189 |
| BanI | GGYRCC | 2 cut(s) | 164, 464 |
| BauI | CACGAG | 1 cut(s) | 323 |
| BccI | CCATC | 1 cut(s) | 397 |
| BceAI | ACGGC | 1 cut(s) | 191 |
| BcnI | CCSGG | 3 cut(s) | 148, 149, 240 |
| BcoDI | GTCTC | 2 cut(s) | 590, 602 |
| BfaI | CTAG | 2 cut(s) | 30, 96 |
| BfoI | RGCGCY | 1 cut(s) | 468 |
| BisI | GCNGC | 6 cut(s) | 51, 93, 204, 267, 563, 621 |
| BlsI | GCNGC | 6 cut(s) | 52, 94, 205, 268, 564, 622 |
| Bme1390I | CCNGG | 3 cut(s) | 148, 149, 240 |
| BmeT110I | CYCGRG | 3 cut(s) | 20, 147, 447 |
| BmgT120I | GGNCC | 2 cut(s) | 444, 618 |
| BmiI | GGNNCC | 8 cut(s) | 103, 166, 446, 466, 478, 502, 536, 619 |
| BmrFI | CCNGG | 3 cut(s) | 148, 149, 240 |
| BmsI | GCATC | 2 cut(s) | 499, 591 |
| BpuMI | CCSGG | 3 cut(s) | 148, 149, 240 |
| BsaHI | GRCGYC | 2 cut(s) | 465, 575 |
| BsaI | GGTCTC | 1 cut(s) | 602 |
| BsaJI | CCNNGG | 5 cut(s) | 147, 168, 198, 440, 504 |
| BsaWI | WCCGGW | 2 cut(s) | 399, 531 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 111, 276, 298, 452, 544, 654 |
| Bse118I | RCCGGY | 2 cut(s) | 399, 623 |
| BseDI | CCNNGG | 5 cut(s) | 147, 168, 198, 440, 504 |
| BseGI | GGATG | 2 cut(s) | 231, 514 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 111, 276, 298, 452, 544, 654 |
| BseRI | GAGGAG | 2 cut(s) | 83, 194 |
| Bsh1236I | CGCG | 3 cut(s) | 170, 339, 436 |
| BshFI | GGCC | 4 cut(s) | 203, 445, 620, 647 |
| BshNI | GGYRCC | 2 cut(s) | 164, 464 |
| BshTI | ACCGGT | 1 cut(s) | 399 |
| BsiHKCI | CYCGRG | 3 cut(s) | 20, 147, 447 |
| BsiSI | CCGG | 6 cut(s) | 148, 240, 292, 400, 532, 624 |
| BslFI | GGGAC | 2 cut(s) | 3, 202 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 111, 276, 298, 452, 544, 654 |
| BsmAI | GTCTC | 2 cut(s) | 590, 602 |
| BsmBI | CGTCTC | 1 cut(s) | 590 |
| BsmFI | GGGAC | 2 cut(s) | 3, 202 |
| BsnI | GGCC | 4 cut(s) | 203, 445, 620, 647 |
| Bso31I | GGTCTC | 1 cut(s) | 602 |
| BsoBI | CYCGRG | 3 cut(s) | 20, 147, 447 |
| BspANI | GGCC | 4 cut(s) | 203, 445, 620, 647 |
| BspFNI | CGCG | 3 cut(s) | 170, 339, 436 |
| BspLI | GGNNCC | 8 cut(s) | 103, 166, 446, 466, 478, 502, 536, 619 |
| BspT107I | GGYRCC | 2 cut(s) | 164, 464 |
| BspTNI | GGTCTC | 1 cut(s) | 602 |
| BsrBI | CCGCTC | 1 cut(s) | 53 |
| BsrFI | RCCGGY | 2 cut(s) | 399, 623 |
| BssAI | RCCGGY | 2 cut(s) | 399, 623 |
| BssECI | CCNNGG | 5 cut(s) | 147, 168, 198, 440, 504 |
| BssNI | GRCGYC | 2 cut(s) | 465, 575 |
| BssSI | CACGAG | 1 cut(s) | 323 |
| BssT1I | CCWWGG | 1 cut(s) | 440 |
| Bst2BI | CACGAG | 1 cut(s) | 323 |
| Bst4CI | ACNGT | 3 cut(s) | 164, 199, 544 |
| Bst6I | CTCTTC | 1 cut(s) | 126 |
| BstACI | GRCGYC | 2 cut(s) | 465, 575 |
| BstC8I | GCNNGC | 6 cut(s) | 78, 82, 264, 301, 305, 625 |
| BstDSI | CCRYGG | 3 cut(s) | 168, 198, 504 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 652 |
| BstF5I | GGATG | 2 cut(s) | 231, 514 |
| BstFNI | CGCG | 3 cut(s) | 170, 339, 436 |
| BstH2I | RGCGCY | 1 cut(s) | 468 |
| BstHHI | GCGC | 3 cut(s) | 309, 438, 467 |
| BstMAI | GTCTC | 2 cut(s) | 590, 602 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 442, 509, 518, 644 |
| BstSCI | CCNGG | 3 cut(s) | 146, 147, 238 |
| BstUI | CGCG | 3 cut(s) | 170, 339, 436 |
| BsuRI | GGCC | 4 cut(s) | 203, 445, 620, 647 |
| BtgI | CCRYGG | 3 cut(s) | 168, 198, 504 |
| BtsCI | GGATG | 2 cut(s) | 231, 514 |
| Cac8I | GCNNGC | 6 cut(s) | 78, 82, 264, 301, 305, 625 |
| CfoI | GCGC | 3 cut(s) | 309, 438, 467 |
| Cfr10I | RCCGGY | 2 cut(s) | 399, 623 |
| Cfr13I | GGNCC | 2 cut(s) | 444, 618 |
| Cfr42I | CCGCGG | 1 cut(s) | 171 |
| Cfr9I | CCCGGG | 1 cut(s) | 147 |
| CseI | GACGC | 3 cut(s) | 245, 328, 583 |
| Csp6I | GTAC | 1 cut(s) | 165 |
| CspAI | ACCGGT | 1 cut(s) | 399 |
| CviAII | CATG | 1 cut(s) | 65 |
| CviQI | GTAC | 1 cut(s) | 165 |
| DinI | GGCGCC | 1 cut(s) | 466 |
| EaeI | YGGCCR | 1 cut(s) | 201 |
| Eam1104I | CTCTTC | 1 cut(s) | 126 |
| EarI | CTCTTC | 1 cut(s) | 126 |
| EciI | GGCGGA | 3 cut(s) | 94, 133, 249 |
| Eco130I | CCWWGG | 1 cut(s) | 440 |
| Eco147I | AGGCCT | 1 cut(s) | 647 |
| Eco31I | GGTCTC | 1 cut(s) | 602 |
| Eco88I | CYCGRG | 3 cut(s) | 20, 147, 447 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 652 |
| EcoT14I | CCWWGG | 1 cut(s) | 440 |
| EgeI | GGCGCC | 1 cut(s) | 466 |
| EheI | GGCGCC | 1 cut(s) | 466 |
| ErhI | CCWWGG | 1 cut(s) | 440 |
| Esp3I | CGTCTC | 1 cut(s) | 590 |
| FaeI | CATG | 1 cut(s) | 68 |
| FaiI | YATR | 3 cut(s) | 66, 312, 540 |
| FaqI | GGGAC | 2 cut(s) | 3, 202 |
| FatI | CATG | 1 cut(s) | 64 |
| FauI | CCCGC | 6 cut(s) | 216, 243, 271, 292, 485, 490 |
| Fnu4HI | GCNGC | 6 cut(s) | 51, 93, 204, 267, 563, 621 |
| FokI | GGATG | 2 cut(s) | 218, 521 |
| Fsp4HI | GCNGC | 6 cut(s) | 51, 93, 204, 267, 563, 621 |
| FspBI | CTAG | 2 cut(s) | 30, 96 |
| GlaI | GCGC | 3 cut(s) | 308, 437, 466 |
| GluI | GCNGC | 6 cut(s) | 51, 93, 204, 267, 563, 621 |
| HaeII | RGCGCY | 1 cut(s) | 468 |
| HaeIII | GGCC | 4 cut(s) | 203, 445, 620, 647 |
| HapII | CCGG | 6 cut(s) | 148, 240, 292, 400, 532, 624 |
| HgaI | GACGC | 3 cut(s) | 245, 328, 583 |
| HhaI | GCGC | 3 cut(s) | 309, 438, 467 |
| Hin1I | GRCGYC | 2 cut(s) | 465, 575 |
| Hin1II | CATG | 1 cut(s) | 68 |
| Hin6I | GCGC | 3 cut(s) | 307, 436, 465 |
| HinP1I | GCGC | 3 cut(s) | 307, 436, 465 |
| HinfI | GANTC | 3 cut(s) | 140, 431, 482 |
| HpaII | CCGG | 6 cut(s) | 148, 240, 292, 400, 532, 624 |
| HphI | GGTGA | 3 cut(s) | 140, 259, 389 |
| Hpy188III | TCNNGA | 1 cut(s) | 20 |
| Hpy99I | CGWCG | 4 cut(s) | 113, 528, 570, 583 |
| HpyAV | CCTTC | 3 cut(s) | 446, 467, 648 |
| HpyCH4III | ACNGT | 3 cut(s) | 164, 199, 544 |
| HpyCH4V | TGCA | 1 cut(s) | 512 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 442, 509, 518, 644 |
| Hsp92I | GRCGYC | 2 cut(s) | 465, 575 |
| Hsp92II | CATG | 1 cut(s) | 68 |
| HspAI | GCGC | 3 cut(s) | 307, 436, 465 |
| KasI | GGCGCC | 1 cut(s) | 464 |
| KpnI | GGTACC | 1 cut(s) | 168 |
| KroI | GCCGGC | 1 cut(s) | 623 |
| KroNI | GCCGGC | 1 cut(s) | 625 |
| KspI | CCGCGG | 1 cut(s) | 171 |
| LmnI | GCTCC | 2 cut(s) | 407, 500 |
| LpnPI | CCDG | 7 cut(s) | 161, 253, 305, 413, 545, 629, 637 |
| LweI | GCATC | 2 cut(s) | 499, 591 |
| MaeI | CTAG | 2 cut(s) | 30, 96 |
| MaeIII | GTNAC | 3 cut(s) | 158, 371, 549 |
| MbiI | CCGCTC | 1 cut(s) | 53 |
| MboII | GAAGA | 6 cut(s) | 53, 143, 341, 384, 595, 598 |
| MfeI | CAATTG | 1 cut(s) | 426 |
| MluCI | AATT | 1 cut(s) | 426 |
| Mly113I | GGCGCC | 1 cut(s) | 465 |
| MlyI | GAGTC | 2 cut(s) | 149, 425 |
| MmeI | TCCRAC | 1 cut(s) | 103 |
| MreI | CGCCGGCG | 1 cut(s) | 623 |
| MroNI | GCCGGC | 1 cut(s) | 623 |
| MroXI | GAANNNNTTC | 1 cut(s) | 481 |
| MseI | TTAA | 1 cut(s) | 155 |
| MspA1I | CMGCKG | 1 cut(s) | 170 |
| MspI | CCGG | 6 cut(s) | 148, 240, 292, 400, 532, 624 |
| MspR9I | CCNGG | 3 cut(s) | 148, 149, 240 |
| MunI | CAATTG | 1 cut(s) | 426 |
| MvnI | CGCG | 3 cut(s) | 170, 339, 436 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 442, 509, 518, 644 |
| NaeI | GCCGGC | 1 cut(s) | 625 |
| NarI | GGCGCC | 1 cut(s) | 465 |
| NciI | CCSGG | 3 cut(s) | 148, 149, 240 |
| NgoMIV | GCCGGC | 1 cut(s) | 623 |
| NlaIII | CATG | 1 cut(s) | 68 |
| NlaIV | GGNNCC | 8 cut(s) | 103, 166, 446, 466, 478, 502, 536, 619 |
| NmuCI | GTSAC | 2 cut(s) | 158, 549 |
| PceI | AGGCCT | 1 cut(s) | 647 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 13, 477 |
| PdiI | GCCGGC | 1 cut(s) | 625 |
| PdmI | GAANNNNTTC | 1 cut(s) | 481 |
| PfeI | GAWTC | 1 cut(s) | 482 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 544 |
| PinAI | ACCGGT | 1 cut(s) | 399 |
| PkrI | GCNGC | 6 cut(s) | 52, 94, 205, 268, 564, 622 |
| PleI | GAGTC | 2 cut(s) | 148, 425 |
| PluTI | GGCGCC | 1 cut(s) | 468 |
| PpsI | GAGTC | 2 cut(s) | 148, 425 |
| PspN4I | GGNNCC | 8 cut(s) | 103, 166, 446, 466, 478, 502, 536, 619 |
| PspPI | GGNCC | 2 cut(s) | 444, 618 |
| RsaI | GTAC | 1 cut(s) | 166 |
| RsaNI | GTAC | 1 cut(s) | 165 |
| SacII | CCGCGG | 1 cut(s) | 171 |
| SaqAI | TTAA | 1 cut(s) | 155 |
| SatI | GCNGC | 6 cut(s) | 51, 93, 204, 267, 563, 621 |
| Sau96I | GGNCC | 2 cut(s) | 444, 618 |
| SchI | GAGTC | 2 cut(s) | 149, 425 |
| ScrFI | CCNGG | 3 cut(s) | 148, 149, 240 |
| SetI | ASST | 6 cut(s) | 123, 130, 358, 388, 412, 659 |
| SfaNI | GCATC | 2 cut(s) | 499, 591 |
| SfoI | GGCGCC | 1 cut(s) | 466 |
| Sfr303I | CCGCGG | 1 cut(s) | 171 |
| SgrAI | CRCCGGYG | 1 cut(s) | 623 |
| SgrBI | CCGCGG | 1 cut(s) | 171 |
| SmaI | CCCGGG | 1 cut(s) | 149 |
| Sse9I | AATT | 1 cut(s) | 426 |
| SseBI | AGGCCT | 1 cut(s) | 647 |
| SspDI | GGCGCC | 1 cut(s) | 464 |
| SspMI | CTAG | 2 cut(s) | 30, 96 |
| StuI | AGGCCT | 1 cut(s) | 647 |
| StyD4I | CCNGG | 3 cut(s) | 146, 147, 238 |
| StyI | CCWWGG | 1 cut(s) | 440 |
| TaaI | ACNGT | 3 cut(s) | 164, 199, 544 |
| TaqI | TCGA | 2 cut(s) | 471, 516 |
| TasI | AATT | 1 cut(s) | 426 |
| TauI | GCSGC | 6 cut(s) | 53, 95, 206, 269, 565, 623 |
| TfiI | GAWTC | 1 cut(s) | 482 |
| Tru1I | TTAA | 1 cut(s) | 155 |
| Tru9I | TTAA | 1 cut(s) | 155 |
| TseFI | GTSAC | 2 cut(s) | 158, 549 |
| Tsp45I | GTSAC | 2 cut(s) | 158, 549 |
| TspDTI | ATGAA | 1 cut(s) | 220 |
| TspGWI | ACGGA | 2 cut(s) | 521, 568 |
| TspMI | CCCGGG | 1 cut(s) | 147 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 544 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 652 |
| XmaI | CCCGGG | 1 cut(s) | 147 |
| XmnI | GAANNNNTTC | 1 cut(s) | 481 |
| XspI | CTAG | 2 cut(s) | 30, 96 |