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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 511 |
| AccBSI | CCGCTC | 2 cut(s) | 196, 525 |
| AccII | CGCG | 6 cut(s) | 98, 108, 156, 317, 512, 693 |
| AcoI | YGGCCR | 2 cut(s) | 123, 318 |
| AcuI | CTGAAG | 1 cut(s) | 434 |
| AcvI | CACGTG | 1 cut(s) | 605 |
| AcyI | GRCGYC | 1 cut(s) | 70 |
| AfaI | GTAC | 2 cut(s) | 356, 501 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 132, 190, 515, 560, 595, 669 |
| AflIII | ACRYGT | 1 cut(s) | 154 |
| AgsI | TTSAA | 1 cut(s) | 302 |
| AleI | CACNNNNGTG | 1 cut(s) | 632 |
| AluBI | AGCT | 4 cut(s) | 31, 52, 115, 220 |
| AluI | AGCT | 4 cut(s) | 31, 52, 115, 220 |
| Alw21I | GWGCWC | 1 cut(s) | 550 |
| Alw26I | GTCTC | 4 cut(s) | 163, 453, 570, 644 |
| Alw44I | GTGCAC | 1 cut(s) | 546 |
| Ama87I | CYCGRG | 2 cut(s) | 630, 669 |
| AoxI | GGCC | 4 cut(s) | 123, 318, 363, 390 |
| ApaI | GGGCCC | 1 cut(s) | 394 |
| ApaLI | GTGCAC | 1 cut(s) | 546 |
| ApeKI | GCWGC | 3 cut(s) | 187, 232, 703 |
| AspLEI | GCGC | 3 cut(s) | 428, 625, 695 |
| AspS9I | GGNCC | 3 cut(s) | 364, 390, 391 |
| AsuC2I | CCSGG | 5 cut(s) | 554, 631, 632, 670, 671 |
| AsuHPI | GGTGA | 2 cut(s) | 274, 530 |
| AvaI | CYCGRG | 2 cut(s) | 630, 669 |
| BaeGI | GKGCMC | 3 cut(s) | 394, 481, 550 |
| BalI | TGGCCA | 1 cut(s) | 125 |
| BanII | GRGCYC | 1 cut(s) | 394 |
| BbrPI | CACGTG | 1 cut(s) | 605 |
| Bbv12I | GWGCWC | 1 cut(s) | 550 |
| BbvI | GCAGC | 3 cut(s) | 174, 244, 715 |
| BccI | CCATC | 1 cut(s) | 134 |
| BceAI | ACGGC | 1 cut(s) | 83 |
| BcnI | CCSGG | 5 cut(s) | 554, 631, 632, 670, 671 |
| BcoDI | GTCTC | 4 cut(s) | 163, 453, 570, 644 |
| BfaI | CTAG | 2 cut(s) | 5, 395 |
| BfmI | CTRYAG | 1 cut(s) | 188 |
| BfoI | RGCGCY | 1 cut(s) | 429 |
| BfuAI | ACCTGC | 1 cut(s) | 511 |
| Bme1390I | CCNGG | 5 cut(s) | 554, 631, 632, 670, 671 |
| BmeT110I | CYCGRG | 2 cut(s) | 630, 669 |
| BmgT120I | GGNCC | 3 cut(s) | 364, 390, 391 |
| BmiI | GGNNCC | 2 cut(s) | 391, 392 |
| BmrFI | CCNGG | 5 cut(s) | 554, 631, 632, 670, 671 |
| BmrI | ACTGGG | 1 cut(s) | 583 |
| BmsI | GCATC | 2 cut(s) | 82, 715 |
| BmuI | ACTGGG | 1 cut(s) | 583 |
| BpmI | CTGGAG | 2 cut(s) | 293, 506 |
| Bpu10I | CCTNAGC | 2 cut(s) | 207, 526 |
| BpuMI | CCSGG | 5 cut(s) | 554, 631, 632, 670, 671 |
| BsaAI | YACGTR | 1 cut(s) | 605 |
| BsaHI | GRCGYC | 1 cut(s) | 70 |
| BsaI | GGTCTC | 2 cut(s) | 570, 644 |
| BsaJI | CCNNGG | 8 cut(s) | 96, 106, 315, 510, 630, 669, 670, 729 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 565, 595 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 132, 190, 515, 560, 595, 669 |
| Bse1I | ACTGG | 1 cut(s) | 589 |
| BseDI | CCNNGG | 8 cut(s) | 96, 106, 315, 510, 630, 669, 670, 729 |
| BseGI | GGATG | 1 cut(s) | 126 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 132, 190, 515, 560, 595, 669 |
| BseMII | CTCAG | 4 cut(s) | 284, 464, 540, 581 |
| BseNI | ACTGG | 1 cut(s) | 589 |
| BseRI | GAGGAG | 2 cut(s) | 567, 570 |
| BseSI | GKGCMC | 3 cut(s) | 394, 481, 550 |
| BseX3I | CGGCCG | 1 cut(s) | 318 |
| BseXI | GCAGC | 3 cut(s) | 174, 244, 715 |
| BseYI | CCCAGC | 1 cut(s) | 386 |
| BsgI | GTGCAG | 1 cut(s) | 251 |
| Bsh1236I | CGCG | 6 cut(s) | 98, 108, 156, 317, 512, 693 |
| Bsh1285I | CGRYCG | 1 cut(s) | 321 |
| BshFI | GGCC | 4 cut(s) | 125, 320, 365, 392 |
| BsiEI | CGRYCG | 1 cut(s) | 321 |
| BsiHKAI | GWGCWC | 1 cut(s) | 550 |
| BsiHKCI | CYCGRG | 2 cut(s) | 630, 669 |
| BsiSI | CCGG | 3 cut(s) | 554, 631, 670 |
| BslFI | GGGAC | 2 cut(s) | 149, 655 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 132, 190, 515, 560, 595, 669 |
| BsmAI | GTCTC | 4 cut(s) | 163, 453, 570, 644 |
| BsmBI | CGTCTC | 2 cut(s) | 163, 453 |
| BsmFI | GGGAC | 2 cut(s) | 149, 655 |
| BsmI | GAATGC | 1 cut(s) | 335 |
| BsnI | GGCC | 4 cut(s) | 125, 320, 365, 392 |
| Bso31I | GGTCTC | 2 cut(s) | 570, 644 |
| BsoBI | CYCGRG | 2 cut(s) | 630, 669 |
| Bsp120I | GGGCCC | 1 cut(s) | 390 |
| Bsp1286I | GDGCHC | 3 cut(s) | 394, 481, 550 |
| BspANI | GGCC | 4 cut(s) | 125, 320, 365, 392 |
| BspCNI | CTCAG | 4 cut(s) | 285, 463, 539, 580 |
| BspFNI | CGCG | 6 cut(s) | 98, 108, 156, 317, 512, 693 |
| BspLI | GGNNCC | 2 cut(s) | 391, 392 |
| BspMAI | CTGCAG | 1 cut(s) | 192 |
| BspMI | ACCTGC | 1 cut(s) | 511 |
| BspTNI | GGTCTC | 2 cut(s) | 570, 644 |
| BsrBI | CCGCTC | 2 cut(s) | 196, 525 |
| BsrI | ACTGG | 1 cut(s) | 589 |
| BssECI | CCNNGG | 8 cut(s) | 96, 106, 315, 510, 630, 669, 670, 729 |
| BssNI | GRCGYC | 1 cut(s) | 70 |
| Bst4CI | ACNGT | 2 cut(s) | 121, 345 |
| BstACI | GRCGYC | 1 cut(s) | 70 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 725 |
| BstBAI | YACGTR | 1 cut(s) | 605 |
| BstC8I | GCNNGC | 7 cut(s) | 33, 54, 113, 468, 550, 610, 711 |
| BstDEI | CTNAG | 6 cut(s) | 207, 293, 450, 471, 526, 567 |
| BstDSI | CCRYGG | 4 cut(s) | 96, 106, 315, 510 |
| BstEII | GGTNACC | 1 cut(s) | 518 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 188 |
| BstF5I | GGATG | 1 cut(s) | 126 |
| BstFNI | CGCG | 6 cut(s) | 98, 108, 156, 317, 512, 693 |
| BstH2I | RGCGCY | 1 cut(s) | 429 |
| BstHHI | GCGC | 3 cut(s) | 428, 625, 695 |
| BstMAI | GTCTC | 4 cut(s) | 163, 453, 570, 644 |
| BstMCI | CGRYCG | 1 cut(s) | 321 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 193, 320, 323, 332, 460, 476, 554, 725 |
| BstNSI | RCATGY | 1 cut(s) | 713 |
| BstPI | GGTNACC | 1 cut(s) | 518 |
| BstSCI | CCNGG | 5 cut(s) | 552, 629, 630, 668, 669 |
| BstSFI | CTRYAG | 1 cut(s) | 188 |
| BstSLI | GKGCMC | 3 cut(s) | 394, 481, 550 |
| BstUI | CGCG | 6 cut(s) | 98, 108, 156, 317, 512, 693 |
| BstV1I | GCAGC | 3 cut(s) | 174, 244, 715 |
| BstZI | CGGCCG | 1 cut(s) | 318 |
| BsuRI | GGCC | 4 cut(s) | 125, 320, 365, 392 |
| BtgI | CCRYGG | 4 cut(s) | 96, 106, 315, 510 |
| BtgZI | GCGATG | 1 cut(s) | 163 |
| BtsCI | GGATG | 1 cut(s) | 126 |
| BtsI | GCAGTG | 1 cut(s) | 538 |
| BtsIMutI | CAGTG | 1 cut(s) | 538 |
| BveI | ACCTGC | 1 cut(s) | 511 |
| Cac8I | GCNNGC | 7 cut(s) | 33, 54, 113, 468, 550, 610, 711 |
| CciNI | GCGGCCGC | 1 cut(s) | 318 |
| CfoI | GCGC | 3 cut(s) | 428, 625, 695 |
| Cfr13I | GGNCC | 3 cut(s) | 364, 390, 391 |
| Cfr42I | CCGCGG | 4 cut(s) | 99, 109, 318, 513 |
| Cfr9I | CCCGGG | 2 cut(s) | 630, 669 |
| CseI | GACGC | 3 cut(s) | 59, 145, 435 |
| Csp6I | GTAC | 2 cut(s) | 355, 500 |
| CviAII | CATG | 1 cut(s) | 710 |
| CviQI | GTAC | 2 cut(s) | 355, 500 |
| DdeI | CTNAG | 6 cut(s) | 207, 293, 450, 471, 526, 567 |
| EaeI | YGGCCR | 2 cut(s) | 123, 318 |
| EagI | CGGCCG | 1 cut(s) | 318 |
| EciI | GGCGGA | 6 cut(s) | 50, 71, 98, 232, 365, 572 |
| EclXI | CGGCCG | 1 cut(s) | 318 |
| Eco24I | GRGCYC | 1 cut(s) | 394 |
| Eco31I | GGTCTC | 2 cut(s) | 570, 644 |
| Eco52I | CGGCCG | 1 cut(s) | 318 |
| Eco57I | CTGAAG | 1 cut(s) | 434 |
| Eco72I | CACGTG | 1 cut(s) | 605 |
| Eco88I | CYCGRG | 2 cut(s) | 630, 669 |
| Eco91I | GGTNACC | 1 cut(s) | 518 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 188 |
| EcoO109I | RGGNCCY | 3 cut(s) | 364, 390, 391 |
| EcoO65I | GGTNACC | 1 cut(s) | 518 |
| EcoT38I | GRGCYC | 1 cut(s) | 394 |
| Esp3I | CGTCTC | 2 cut(s) | 163, 453 |
| FaeI | CATG | 1 cut(s) | 713 |
| FaiI | YATR | 2 cut(s) | 341, 711 |
| FaqI | GGGAC | 2 cut(s) | 149, 655 |
| FatI | CATG | 1 cut(s) | 709 |
| FauI | CCCGC | 6 cut(s) | 113, 126, 189, 228, 489, 517 |
| FokI | GGATG | 1 cut(s) | 113 |
| FriOI | GRGCYC | 1 cut(s) | 394 |
| FspBI | CTAG | 2 cut(s) | 5, 395 |
| GlaI | GCGC | 3 cut(s) | 427, 624, 694 |
| GsaI | CCCAGC | 1 cut(s) | 390 |
| GsuI | CTGGAG | 2 cut(s) | 293, 506 |
| HaeII | RGCGCY | 1 cut(s) | 429 |
| HaeIII | GGCC | 4 cut(s) | 125, 320, 365, 392 |
| HapII | CCGG | 3 cut(s) | 554, 631, 670 |
| HgaI | GACGC | 3 cut(s) | 59, 145, 435 |
| HhaI | GCGC | 3 cut(s) | 428, 625, 695 |
| Hin1I | GRCGYC | 1 cut(s) | 70 |
| Hin1II | CATG | 1 cut(s) | 713 |
| Hin6I | GCGC | 3 cut(s) | 426, 623, 693 |
| HinP1I | GCGC | 3 cut(s) | 426, 623, 693 |
| HinfI | GANTC | 3 cut(s) | 239, 374, 574 |
| HpaII | CCGG | 3 cut(s) | 554, 631, 670 |
| HphI | GGTGA | 2 cut(s) | 274, 530 |
| Hpy166II | GTNNAC | 2 cut(s) | 548, 637 |
| Hpy188I | TCNGA | 2 cut(s) | 595, 679 |
| Hpy188III | TCNNGA | 1 cut(s) | 292 |
| Hpy8I | GTNNAC | 2 cut(s) | 548, 637 |
| HpyAV | CCTTC | 5 cut(s) | 296, 376, 415, 509, 554 |
| HpyCH4III | ACNGT | 2 cut(s) | 121, 345 |
| HpyCH4IV | ACGT | 2 cut(s) | 402, 604 |
| HpyCH4V | TGCA | 3 cut(s) | 190, 232, 548 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 193, 320, 323, 332, 460, 476, 554, 725 |
| HpyF3I | CTNAG | 6 cut(s) | 207, 293, 450, 471, 526, 567 |
| HpySE526I | ACGT | 2 cut(s) | 402, 604 |
| Hsp92I | GRCGYC | 1 cut(s) | 70 |
| Hsp92II | CATG | 1 cut(s) | 713 |
| HspAI | GCGC | 3 cut(s) | 426, 623, 693 |
| KspI | CCGCGG | 4 cut(s) | 99, 109, 318, 513 |
| LmnI | GCTCC | 3 cut(s) | 28, 169, 193 |
| Lsp1109I | GCAGC | 3 cut(s) | 174, 244, 715 |
| LweI | GCATC | 2 cut(s) | 82, 715 |
| MaeI | CTAG | 2 cut(s) | 5, 395 |
| MaeII | ACGT | 2 cut(s) | 402, 604 |
| MaeIII | GTNAC | 2 cut(s) | 518, 600 |
| MbiI | CCGCTC | 2 cut(s) | 196, 525 |
| MboII | GAAGA | 1 cut(s) | 734 |
| MhlI | GDGCHC | 3 cut(s) | 394, 481, 550 |
| MlsI | TGGCCA | 1 cut(s) | 125 |
| MluI | ACGCGT | 1 cut(s) | 154 |
| MluNI | TGGCCA | 1 cut(s) | 125 |
| MlyI | GAGTC | 3 cut(s) | 248, 383, 568 |
| MmeI | TCCRAC | 2 cut(s) | 147, 573 |
| Mox20I | TGGCCA | 1 cut(s) | 125 |
| MscI | TGGCCA | 1 cut(s) | 125 |
| MslI | CAYNNNNRTG | 2 cut(s) | 227, 632 |
| Msp20I | TGGCCA | 1 cut(s) | 125 |
| MspA1I | CMGCKG | 8 cut(s) | 98, 108, 133, 235, 317, 326, 484, 512 |
| MspI | CCGG | 3 cut(s) | 554, 631, 670 |
| MspR9I | CCNGG | 5 cut(s) | 554, 631, 632, 670, 671 |
| Mva1269I | GAATGC | 1 cut(s) | 335 |
| MvnI | CGCG | 6 cut(s) | 98, 108, 156, 317, 512, 693 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 193, 320, 323, 332, 460, 476, 554, 725 |
| NciI | CCSGG | 5 cut(s) | 554, 631, 632, 670, 671 |
| NlaIII | CATG | 1 cut(s) | 713 |
| NlaIV | GGNNCC | 2 cut(s) | 391, 392 |
| NmuCI | GTSAC | 2 cut(s) | 518, 600 |
| NotI | GCGGCCGC | 1 cut(s) | 318 |
| NspI | RCATGY | 1 cut(s) | 713 |
| OliI | CACNNNNGTG | 1 cut(s) | 632 |
| PaeI | GCATGC | 1 cut(s) | 713 |
| PctI | GAATGC | 1 cut(s) | 335 |
| PflFI | GACNNNGTC | 1 cut(s) | 373 |
| PleI | GAGTC | 3 cut(s) | 247, 382, 568 |
| PmaCI | CACGTG | 1 cut(s) | 605 |
| PmlI | CACGTG | 1 cut(s) | 605 |
| PpsI | GAGTC | 3 cut(s) | 247, 382, 568 |
| Ppu21I | YACGTR | 1 cut(s) | 605 |
| PspCI | CACGTG | 1 cut(s) | 605 |
| PspEI | GGTNACC | 1 cut(s) | 518 |
| PspFI | CCCAGC | 1 cut(s) | 386 |
| PspN4I | GGNNCC | 2 cut(s) | 391, 392 |
| PspOMI | GGGCCC | 1 cut(s) | 390 |
| PspPI | GGNCC | 3 cut(s) | 364, 390, 391 |
| PstI | CTGCAG | 1 cut(s) | 192 |
| PsyI | GACNNNGTC | 1 cut(s) | 373 |
| RsaI | GTAC | 2 cut(s) | 356, 501 |
| RsaNI | GTAC | 2 cut(s) | 355, 500 |
| RseI | CAYNNNNRTG | 2 cut(s) | 227, 632 |
| SacII | CCGCGG | 4 cut(s) | 99, 109, 318, 513 |
| Sau96I | GGNCC | 3 cut(s) | 364, 390, 391 |
| SchI | GAGTC | 3 cut(s) | 248, 383, 568 |
| ScrFI | CCNGG | 5 cut(s) | 554, 631, 632, 670, 671 |
| SduI | GDGCHC | 3 cut(s) | 394, 481, 550 |
| SfaNI | GCATC | 2 cut(s) | 82, 715 |
| SfcI | CTRYAG | 1 cut(s) | 188 |
| Sfr303I | CCGCGG | 4 cut(s) | 99, 109, 318, 513 |
| SgrBI | CCGCGG | 4 cut(s) | 99, 109, 318, 513 |
| SmaI | CCCGGG | 2 cut(s) | 632, 671 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 227, 632 |
| SphI | GCATGC | 1 cut(s) | 713 |
| SspMI | CTAG | 2 cut(s) | 5, 395 |
| StyD4I | CCNGG | 5 cut(s) | 552, 629, 630, 668, 669 |
| TaaI | ACNGT | 2 cut(s) | 121, 345 |
| TaiI | ACGT | 2 cut(s) | 405, 607 |
| TaqI | TCGA | 1 cut(s) | 432 |
| TaqII | GACCGA | 1 cut(s) | 386 |
| TatI | WGTACW | 1 cut(s) | 354 |
| TscAI | CASTG | 1 cut(s) | 538 |
| TseFI | GTSAC | 2 cut(s) | 518, 600 |
| TseI | GCWGC | 3 cut(s) | 187, 232, 703 |
| Tsp45I | GTSAC | 2 cut(s) | 518, 600 |
| TspDTI | ATGAA | 2 cut(s) | 165, 328 |
| TspMI | CCCGGG | 2 cut(s) | 630, 669 |
| TspRI | CASTG | 1 cut(s) | 538 |
| Tth111I | GACNNNGTC | 1 cut(s) | 373 |
| VneI | GTGCAC | 1 cut(s) | 546 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 188 |
| XceI | RCATGY | 1 cut(s) | 713 |
| XmaI | CCCGGG | 2 cut(s) | 630, 669 |
| XspI | CTAG | 2 cut(s) | 5, 395 |