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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 184, 488 |
| AccBSI | CCGCTC | 1 cut(s) | 274 |
| AccII | CGCG | 5 cut(s) | 18, 20, 22, 224, 307 |
| AcuI | CTGAAG | 1 cut(s) | 319 |
| AcyI | GRCGYC | 3 cut(s) | 185, 389, 509 |
| AfaI | GTAC | 1 cut(s) | 221 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 94, 409 |
| AjiI | CACGTC | 1 cut(s) | 523 |
| AjnI | CCWGG | 1 cut(s) | 11 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 236, 268 |
| AluBI | AGCT | 2 cut(s) | 339, 418 |
| AluI | AGCT | 2 cut(s) | 339, 418 |
| Alw21I | GWGCWC | 1 cut(s) | 420 |
| Alw26I | GTCTC | 2 cut(s) | 443, 463 |
| AoxI | GGCC | 2 cut(s) | 141, 459 |
| ApeKI | GCWGC | 3 cut(s) | 38, 76, 397 |
| AspLEI | GCGC | 8 cut(s) | 18, 20, 22, 58, 72, 187, 226, 309 |
| AspS9I | GGNCC | 4 cut(s) | 33, 124, 142, 532 |
| AsuC2I | CCSGG | 2 cut(s) | 403, 545 |
| AsuHPI | GGTGA | 1 cut(s) | 37 |
| AvaII | GGWCC | 3 cut(s) | 33, 124, 532 |
| BaeGI | GKGCMC | 1 cut(s) | 544 |
| BanI | GGYRCC | 2 cut(s) | 184, 488 |
| BanII | GRGCYC | 1 cut(s) | 420 |
| Bbv12I | GWGCWC | 1 cut(s) | 420 |
| BbvI | GCAGC | 3 cut(s) | 25, 88, 409 |
| BccI | CCATC | 1 cut(s) | 270 |
| BceAI | ACGGC | 1 cut(s) | 330 |
| BciT130I | CCWGG | 1 cut(s) | 13 |
| BcnI | CCSGG | 2 cut(s) | 403, 545 |
| BcoDI | GTCTC | 2 cut(s) | 443, 463 |
| BfoI | RGCGCY | 3 cut(s) | 59, 73, 188 |
| BisI | GCNGC | 6 cut(s) | 39, 77, 275, 387, 398, 527 |
| BlsI | GCNGC | 6 cut(s) | 40, 78, 276, 388, 399, 528 |
| Bme1390I | CCNGG | 3 cut(s) | 13, 403, 545 |
| Bme18I | GGWCC | 3 cut(s) | 33, 124, 532 |
| BmgBI | CACGTC | 1 cut(s) | 523 |
| BmgT120I | GGNCC | 4 cut(s) | 33, 124, 142, 532 |
| BmiI | GGNNCC | 4 cut(s) | 125, 186, 490, 552 |
| BmrFI | CCNGG | 3 cut(s) | 13, 403, 545 |
| BmsI | GCATC | 1 cut(s) | 164 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 240, 272 |
| BpmI | CTGGAG | 1 cut(s) | 80 |
| Bpu10I | CCTNAGC | 1 cut(s) | 419 |
| BpuMI | CCSGG | 2 cut(s) | 403, 545 |
| BsaHI | GRCGYC | 3 cut(s) | 185, 389, 509 |
| BsaI | GGTCTC | 1 cut(s) | 443 |
| BsaJI | CCNNGG | 4 cut(s) | 93, 401, 462, 543 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 236, 266 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 94, 409 |
| Bse118I | RCCGGY | 2 cut(s) | 72, 529 |
| Bse1I | ACTGG | 1 cut(s) | 477 |
| BseBI | CCWGG | 1 cut(s) | 13 |
| BseDI | CCNNGG | 4 cut(s) | 93, 401, 462, 543 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 94, 409 |
| BseMII | CTCAG | 1 cut(s) | 433 |
| BseNI | ACTGG | 1 cut(s) | 477 |
| BsePI | GCGCGC | 2 cut(s) | 16, 18 |
| BseSI | GKGCMC | 1 cut(s) | 544 |
| BseXI | GCAGC | 3 cut(s) | 25, 88, 409 |
| BseYI | CCCAGC | 1 cut(s) | 277 |
| Bsh1236I | CGCG | 5 cut(s) | 18, 20, 22, 224, 307 |
| BshFI | GGCC | 2 cut(s) | 143, 461 |
| BshNI | GGYRCC | 2 cut(s) | 184, 488 |
| BsiHKAI | GWGCWC | 1 cut(s) | 420 |
| BsiSI | CCGG | 4 cut(s) | 73, 403, 530, 545 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 94, 409 |
| BsmAI | GTCTC | 2 cut(s) | 443, 463 |
| BsnI | GGCC | 2 cut(s) | 143, 461 |
| Bso31I | GGTCTC | 1 cut(s) | 443 |
| Bsp1286I | GDGCHC | 2 cut(s) | 420, 544 |
| Bsp143I | GATC | 1 cut(s) | 199 |
| BspANI | GGCC | 2 cut(s) | 143, 461 |
| BspCNI | CTCAG | 1 cut(s) | 432 |
| BspFNI | CGCG | 5 cut(s) | 18, 20, 22, 224, 307 |
| BspHI | TCATGA | 1 cut(s) | 231 |
| BspLI | GGNNCC | 4 cut(s) | 125, 186, 490, 552 |
| BspQI | GCTCTTC | 1 cut(s) | 408 |
| BspT107I | GGYRCC | 2 cut(s) | 184, 488 |
| BspTNI | GGTCTC | 1 cut(s) | 443 |
| BsrBI | CCGCTC | 1 cut(s) | 274 |
| BsrFI | RCCGGY | 2 cut(s) | 72, 529 |
| BsrI | ACTGG | 1 cut(s) | 477 |
| BssAI | RCCGGY | 2 cut(s) | 72, 529 |
| BssECI | CCNNGG | 4 cut(s) | 93, 401, 462, 543 |
| BssHII | GCGCGC | 2 cut(s) | 16, 18 |
| BssMI | GATC | 1 cut(s) | 199 |
| BssNI | GRCGYC | 3 cut(s) | 185, 389, 509 |
| BssT1I | CCWWGG | 1 cut(s) | 462 |
| Bst2UI | CCWGG | 1 cut(s) | 13 |
| Bst6I | CTCTTC | 4 cut(s) | 93, 102, 263, 408 |
| BstACI | GRCGYC | 3 cut(s) | 185, 389, 509 |
| BstC8I | GCNNGC | 6 cut(s) | 6, 18, 20, 43, 74, 298 |
| BstDEI | CTNAG | 1 cut(s) | 419 |
| BstFNI | CGCG | 5 cut(s) | 18, 20, 22, 224, 307 |
| BstH2I | RGCGCY | 3 cut(s) | 59, 73, 188 |
| BstHHI | GCGC | 8 cut(s) | 18, 20, 22, 58, 72, 187, 226, 309 |
| BstKTI | GATC | 1 cut(s) | 202 |
| BstMAI | GTCTC | 2 cut(s) | 443, 463 |
| BstMBI | GATC | 1 cut(s) | 199 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 76, 221, 306, 523 |
| BstNI | CCWGG | 1 cut(s) | 13 |
| BstSCI | CCNGG | 3 cut(s) | 11, 401, 543 |
| BstSLI | GKGCMC | 1 cut(s) | 544 |
| BstUI | CGCG | 5 cut(s) | 18, 20, 22, 224, 307 |
| BstV1I | GCAGC | 3 cut(s) | 25, 88, 409 |
| BsuRI | GGCC | 2 cut(s) | 143, 461 |
| BtrI | CACGTC | 1 cut(s) | 523 |
| BtsI | GCAGTG | 1 cut(s) | 174 |
| BtsIMutI | CAGTG | 1 cut(s) | 174 |
| Cac8I | GCNNGC | 6 cut(s) | 6, 18, 20, 43, 74, 298 |
| CciI | TCATGA | 1 cut(s) | 231 |
| CfoI | GCGC | 8 cut(s) | 18, 20, 22, 58, 72, 187, 226, 309 |
| Cfr10I | RCCGGY | 2 cut(s) | 72, 529 |
| Cfr13I | GGNCC | 4 cut(s) | 33, 124, 142, 532 |
| CseI | GACGC | 2 cut(s) | 378, 498 |
| Csp6I | GTAC | 1 cut(s) | 220 |
| CviAII | CATG | 1 cut(s) | 232 |
| CviJI | RGCY | 9 cut(s) | 79, 143, 277, 339, 400, 418, 461, 517, 553 |
| CviKI_1 | RGCY | 9 cut(s) | 79, 143, 277, 339, 400, 418, 461, 517, 553 |
| CviQI | GTAC | 1 cut(s) | 220 |
| DdeI | CTNAG | 1 cut(s) | 419 |
| DinI | GGCGCC | 1 cut(s) | 186 |
| DpnI | GATC | 1 cut(s) | 201 |
| DpnII | GATC | 1 cut(s) | 199 |
| Eam1104I | CTCTTC | 4 cut(s) | 93, 102, 263, 408 |
| EarI | CTCTTC | 4 cut(s) | 93, 102, 263, 408 |
| EciI | GGCGGA | 4 cut(s) | 116, 188, 470, 491 |
| Ecl136II | GAGCTC | 1 cut(s) | 418 |
| Eco130I | CCWWGG | 1 cut(s) | 462 |
| Eco24I | GRGCYC | 1 cut(s) | 420 |
| Eco31I | GGTCTC | 1 cut(s) | 443 |
| Eco47I | GGWCC | 3 cut(s) | 33, 124, 532 |
| Eco53kI | GAGCTC | 1 cut(s) | 418 |
| Eco57I | CTGAAG | 1 cut(s) | 319 |
| EcoICRI | GAGCTC | 1 cut(s) | 418 |
| EcoRII | CCWGG | 1 cut(s) | 11 |
| EcoT14I | CCWWGG | 1 cut(s) | 462 |
| EcoT38I | GRGCYC | 1 cut(s) | 420 |
| EgeI | GGCGCC | 1 cut(s) | 186 |
| EheI | GGCGCC | 1 cut(s) | 186 |
| ErhI | CCWWGG | 1 cut(s) | 462 |
| FaeI | CATG | 1 cut(s) | 235 |
| FaiI | YATR | 3 cut(s) | 233, 302, 377 |
| FatI | CATG | 1 cut(s) | 231 |
| FauI | CCCGC | 4 cut(s) | 15, 97, 289, 355 |
| Fnu4HI | GCNGC | 6 cut(s) | 39, 77, 275, 387, 398, 527 |
| FriOI | GRGCYC | 1 cut(s) | 420 |
| Fsp4HI | GCNGC | 6 cut(s) | 39, 77, 275, 387, 398, 527 |
| GlaI | GCGC | 8 cut(s) | 17, 19, 21, 57, 71, 186, 225, 308 |
| GluI | GCNGC | 6 cut(s) | 39, 77, 275, 387, 398, 527 |
| GsaI | CCCAGC | 1 cut(s) | 281 |
| GsuI | CTGGAG | 1 cut(s) | 80 |
| HaeII | RGCGCY | 3 cut(s) | 59, 73, 188 |
| HaeIII | GGCC | 2 cut(s) | 143, 461 |
| HapII | CCGG | 4 cut(s) | 73, 403, 530, 545 |
| HgaI | GACGC | 2 cut(s) | 378, 498 |
| HhaI | GCGC | 8 cut(s) | 18, 20, 22, 58, 72, 187, 226, 309 |
| Hin1I | GRCGYC | 3 cut(s) | 185, 389, 509 |
| Hin1II | CATG | 1 cut(s) | 235 |
| Hin6I | GCGC | 8 cut(s) | 16, 18, 20, 56, 70, 185, 224, 307 |
| HinP1I | GCGC | 8 cut(s) | 16, 18, 20, 56, 70, 185, 224, 307 |
| HinfI | GANTC | 2 cut(s) | 83, 206 |
| HpaII | CCGG | 4 cut(s) | 73, 403, 530, 545 |
| HphI | GGTGA | 1 cut(s) | 37 |
| Hpy188I | TCNGA | 1 cut(s) | 434 |
| Hpy188III | TCNNGA | 3 cut(s) | 203, 232, 535 |
| Hpy99I | CGWCG | 1 cut(s) | 316 |
| HpyAV | CCTTC | 5 cut(s) | 133, 154, 220, 233, 343 |
| HpyCH4IV | ACGT | 1 cut(s) | 522 |
| HpyCH4V | TGCA | 1 cut(s) | 167 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 76, 221, 306, 523 |
| HpyF3I | CTNAG | 1 cut(s) | 419 |
| HpySE526I | ACGT | 1 cut(s) | 522 |
| Hsp92I | GRCGYC | 3 cut(s) | 185, 389, 509 |
| Hsp92II | CATG | 1 cut(s) | 235 |
| HspAI | GCGC | 8 cut(s) | 16, 18, 20, 56, 70, 185, 224, 307 |
| KasI | GGCGCC | 1 cut(s) | 184 |
| KroI | GCCGGC | 1 cut(s) | 72 |
| KroNI | GCCGGC | 1 cut(s) | 74 |
| Kzo9I | GATC | 1 cut(s) | 199 |
| LguI | GCTCTTC | 1 cut(s) | 408 |
| LmnI | GCTCC | 2 cut(s) | 244, 550 |
| Lsp1109I | GCAGC | 3 cut(s) | 25, 88, 409 |
| LweI | GCATC | 1 cut(s) | 164 |
| MaeII | ACGT | 1 cut(s) | 522 |
| MaeIII | GTNAC | 3 cut(s) | 25, 366, 510 |
| MalI | GATC | 1 cut(s) | 201 |
| MauBI | CGCGCGCG | 1 cut(s) | 18 |
| MbiI | CCGCTC | 1 cut(s) | 274 |
| MboI | GATC | 1 cut(s) | 199 |
| MboII | GAAGA | 6 cut(s) | 76, 110, 116, 119, 250, 425 |
| MfeI | CAATTG | 1 cut(s) | 318 |
| MhlI | GDGCHC | 2 cut(s) | 420, 544 |
| MluCI | AATT | 1 cut(s) | 318 |
| Mly113I | GGCGCC | 1 cut(s) | 185 |
| MlyI | GAGTC | 2 cut(s) | 77, 200 |
| MroNI | GCCGGC | 1 cut(s) | 72 |
| MslI | CAYNNNNRTG | 1 cut(s) | 267 |
| MspA1I | CMGCKG | 1 cut(s) | 38 |
| MspI | CCGG | 4 cut(s) | 73, 403, 530, 545 |
| MspR9I | CCNGG | 3 cut(s) | 13, 403, 545 |
| MunI | CAATTG | 1 cut(s) | 318 |
| MvaI | CCWGG | 1 cut(s) | 13 |
| MvnI | CGCG | 5 cut(s) | 18, 20, 22, 224, 307 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 76, 221, 306, 523 |
| NaeI | GCCGGC | 1 cut(s) | 74 |
| NarI | GGCGCC | 1 cut(s) | 185 |
| NciI | CCSGG | 2 cut(s) | 403, 545 |
| NdeII | GATC | 1 cut(s) | 199 |
| NgoMIV | GCCGGC | 1 cut(s) | 72 |
| NlaIII | CATG | 1 cut(s) | 235 |
| NlaIV | GGNNCC | 4 cut(s) | 125, 186, 490, 552 |
| NmeAIII | GCCGAG | 3 cut(s) | 118, 241, 320 |
| NmuCI | GTSAC | 2 cut(s) | 25, 510 |
| PagI | TCATGA | 1 cut(s) | 231 |
| PauI | GCGCGC | 2 cut(s) | 16, 18 |
| PciSI | GCTCTTC | 1 cut(s) | 408 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 378 |
| PdiI | GCCGGC | 1 cut(s) | 74 |
| PkrI | GCNGC | 6 cut(s) | 40, 78, 276, 388, 399, 528 |
| PleI | GAGTC | 2 cut(s) | 77, 200 |
| PluTI | GGCGCC | 1 cut(s) | 188 |
| PpsI | GAGTC | 2 cut(s) | 77, 200 |
| Psp124BI | GAGCTC | 1 cut(s) | 420 |
| Psp6I | CCWGG | 1 cut(s) | 11 |
| PspFI | CCCAGC | 1 cut(s) | 277 |
| PspGI | CCWGG | 1 cut(s) | 11 |
| PspN4I | GGNNCC | 4 cut(s) | 125, 186, 490, 552 |
| PspPI | GGNCC | 4 cut(s) | 33, 124, 142, 532 |
| PteI | GCGCGC | 2 cut(s) | 16, 18 |
| RsaI | GTAC | 1 cut(s) | 221 |
| RsaNI | GTAC | 1 cut(s) | 220 |
| RseI | CAYNNNNRTG | 1 cut(s) | 267 |
| SacI | GAGCTC | 1 cut(s) | 420 |
| SapI | GCTCTTC | 1 cut(s) | 408 |
| SatI | GCNGC | 6 cut(s) | 39, 77, 275, 387, 398, 527 |
| Sau3AI | GATC | 1 cut(s) | 199 |
| Sau96I | GGNCC | 4 cut(s) | 33, 124, 142, 532 |
| SchI | GAGTC | 2 cut(s) | 77, 200 |
| ScrFI | CCNGG | 3 cut(s) | 13, 403, 545 |
| SduI | GDGCHC | 2 cut(s) | 420, 544 |
| SetI | ASST | 7 cut(s) | 114, 165, 341, 420, 439, 483, 525 |
| SfaNI | GCATC | 1 cut(s) | 164 |
| SfoI | GGCGCC | 1 cut(s) | 186 |
| SinI | GGWCC | 3 cut(s) | 33, 124, 532 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 267 |
| Sse9I | AATT | 1 cut(s) | 318 |
| SspDI | GGCGCC | 1 cut(s) | 184 |
| SstI | GAGCTC | 1 cut(s) | 420 |
| StyD4I | CCNGG | 3 cut(s) | 11, 401, 543 |
| StyI | CCWWGG | 1 cut(s) | 462 |
| TaiI | ACGT | 1 cut(s) | 525 |
| TaqI | TCGA | 2 cut(s) | 158, 483 |
| TasI | AATT | 1 cut(s) | 318 |
| TauI | GCSGC | 3 cut(s) | 277, 389, 529 |
| TscAI | CASTG | 1 cut(s) | 174 |
| TseFI | GTSAC | 2 cut(s) | 25, 510 |
| TseI | GCWGC | 3 cut(s) | 38, 76, 397 |
| Tsp45I | GTSAC | 2 cut(s) | 25, 510 |
| TspDTI | ATGAA | 1 cut(s) | 220 |
| TspRI | CASTG | 1 cut(s) | 174 |
| VpaK11BI | GGWCC | 3 cut(s) | 33, 124, 532 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 469 |