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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 734 |
| AccB1I | GGYRCC | 4 cut(s) | 13, 611, 734, 791 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 531 |
| AccBSI | CCGCTC | 7 cut(s) | 100, 135, 229, 241, 618, 728, 761 |
| AclWI | GGATC | 3 cut(s) | 129, 297, 775 |
| AcoI | YGGCCR | 1 cut(s) | 711 |
| AcsI | RAATTY | 1 cut(s) | 53 |
| AcuI | CTGAAG | 1 cut(s) | 311 |
| AcyI | GRCGYC | 1 cut(s) | 746 |
| AfaI | GTAC | 1 cut(s) | 736 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 23, 73, 228, 412, 531 |
| AflIII | ACRYGT | 1 cut(s) | 504 |
| AgsI | TTSAA | 2 cut(s) | 163, 511 |
| AjiI | CACGTC | 1 cut(s) | 253 |
| AjnI | CCWGG | 2 cut(s) | 383, 763 |
| AluBI | AGCT | 4 cut(s) | 278, 563, 783, 802 |
| AluI | AGCT | 4 cut(s) | 278, 563, 783, 802 |
| Alw26I | GTCTC | 3 cut(s) | 159, 259, 697 |
| AlwI | GGATC | 3 cut(s) | 129, 297, 775 |
| Ama87I | CYCGRG | 2 cut(s) | 236, 836 |
| AoxI | GGCC | 2 cut(s) | 480, 711 |
| ApeKI | GCWGC | 2 cut(s) | 488, 783 |
| ApoI | RAATTY | 1 cut(s) | 53 |
| Asp718I | GGTACC | 1 cut(s) | 734 |
| AspLEI | GCGC | 1 cut(s) | 44 |
| AspS9I | GGNCC | 1 cut(s) | 232 |
| AsuHPI | GGTGA | 5 cut(s) | 80, 370, 547, 754, 820 |
| AvaI | CYCGRG | 2 cut(s) | 236, 836 |
| AvaII | GGWCC | 1 cut(s) | 232 |
| BaeGI | GKGCMC | 2 cut(s) | 616, 794 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 726, 759 |
| BanI | GGYRCC | 4 cut(s) | 13, 611, 734, 791 |
| BanII | GRGCYC | 2 cut(s) | 524, 755 |
| BbvI | GCAGC | 2 cut(s) | 475, 770 |
| BccI | CCATC | 3 cut(s) | 460, 533, 725 |
| BceAI | ACGGC | 1 cut(s) | 128 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 127, 161 |
| BciT130I | CCWGG | 2 cut(s) | 385, 765 |
| BclI | TGATCA | 1 cut(s) | 810 |
| BcoDI | GTCTC | 3 cut(s) | 159, 259, 697 |
| BfaI | CTAG | 3 cut(s) | 29, 104, 263 |
| BfmI | CTRYAG | 1 cut(s) | 444 |
| BisI | GCNGC | 8 cut(s) | 17, 101, 300, 342, 474, 489, 714, 784 |
| BlsI | GCNGC | 8 cut(s) | 18, 102, 301, 343, 475, 490, 715, 785 |
| Bme1390I | CCNGG | 2 cut(s) | 385, 765 |
| Bme18I | GGWCC | 1 cut(s) | 232 |
| BmeT110I | CYCGRG | 2 cut(s) | 236, 836 |
| BmgBI | CACGTC | 1 cut(s) | 253 |
| BmgT120I | GGNCC | 1 cut(s) | 232 |
| BmiI | GGNNCC | 7 cut(s) | 15, 233, 523, 576, 613, 736, 793 |
| BmrFI | CCNGG | 2 cut(s) | 385, 765 |
| BmrI | ACTGGG | 1 cut(s) | 541 |
| BmsI | GCATC | 1 cut(s) | 652 |
| BmuI | ACTGGG | 1 cut(s) | 541 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 404, 436 |
| Bpu10I | CCTNAGC | 1 cut(s) | 619 |
| BpuEI | CTTGAG | 2 cut(s) | 410, 585 |
| BsaHI | GRCGYC | 1 cut(s) | 746 |
| BsaJI | CCNNGG | 1 cut(s) | 738 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 239, 269 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 23, 73, 228, 412, 531 |
| Bse118I | RCCGGY | 1 cut(s) | 482 |
| Bse1I | ACTGG | 1 cut(s) | 536 |
| BseBI | CCWGG | 2 cut(s) | 385, 765 |
| BseDI | CCNNGG | 1 cut(s) | 738 |
| BseGI | GGATG | 3 cut(s) | 643, 658, 736 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 23, 73, 228, 412, 531 |
| BseMII | CTCAG | 4 cut(s) | 387, 402, 633, 674 |
| BseNI | ACTGG | 1 cut(s) | 536 |
| BseSI | GKGCMC | 2 cut(s) | 616, 794 |
| BseXI | GCAGC | 2 cut(s) | 475, 770 |
| BseYI | CCCAGC | 1 cut(s) | 5 |
| Bsh1285I | CGRYCG | 1 cut(s) | 73 |
| BshFI | GGCC | 2 cut(s) | 482, 713 |
| BshNI | GGYRCC | 4 cut(s) | 13, 611, 734, 791 |
| BsiEI | CGRYCG | 1 cut(s) | 73 |
| BsiHKCI | CYCGRG | 2 cut(s) | 236, 836 |
| BsiSI | CCGG | 2 cut(s) | 483, 647 |
| BslFI | GGGAC | 2 cut(s) | 245, 529 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 23, 73, 228, 412, 531 |
| BsmAI | GTCTC | 3 cut(s) | 159, 259, 697 |
| BsmBI | CGTCTC | 1 cut(s) | 259 |
| BsmFI | GGGAC | 2 cut(s) | 245, 529 |
| BsnI | GGCC | 2 cut(s) | 482, 713 |
| BsoBI | CYCGRG | 2 cut(s) | 236, 836 |
| Bsp1286I | GDGCHC | 4 cut(s) | 524, 616, 755, 794 |
| Bsp143I | GATC | 5 cut(s) | 70, 121, 289, 767, 810 |
| BspANI | GGCC | 2 cut(s) | 482, 713 |
| BspCNI | CTCAG | 4 cut(s) | 388, 403, 632, 673 |
| BspLI | GGNNCC | 7 cut(s) | 15, 233, 523, 576, 613, 736, 793 |
| BspMAI | CTGCAG | 1 cut(s) | 448 |
| BspPI | GGATC | 3 cut(s) | 129, 297, 775 |
| BspQI | GCTCTTC | 2 cut(s) | 285, 395 |
| BspT107I | GGYRCC | 4 cut(s) | 13, 611, 734, 791 |
| BsrBI | CCGCTC | 7 cut(s) | 100, 135, 229, 241, 618, 728, 761 |
| BsrFI | RCCGGY | 1 cut(s) | 482 |
| BsrI | ACTGG | 1 cut(s) | 536 |
| BssAI | RCCGGY | 1 cut(s) | 482 |
| BssECI | CCNNGG | 1 cut(s) | 738 |
| BssMI | GATC | 5 cut(s) | 70, 121, 289, 767, 810 |
| BssNI | GRCGYC | 1 cut(s) | 746 |
| Bst2UI | CCWGG | 2 cut(s) | 385, 765 |
| Bst4CI | ACNGT | 2 cut(s) | 153, 739 |
| Bst6I | CTCTTC | 3 cut(s) | 285, 395, 813 |
| BstACI | GRCGYC | 1 cut(s) | 746 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 611 |
| BstC8I | GCNNGC | 4 cut(s) | 98, 459, 579, 616 |
| BstDEI | CTNAG | 4 cut(s) | 396, 411, 619, 660 |
| BstDSI | CCRYGG | 1 cut(s) | 738 |
| BstF5I | GGATG | 3 cut(s) | 643, 658, 736 |
| BstHHI | GCGC | 1 cut(s) | 44 |
| BstKTI | GATC | 5 cut(s) | 73, 124, 292, 770, 813 |
| BstMAI | GTCTC | 3 cut(s) | 159, 259, 697 |
| BstMBI | GATC | 5 cut(s) | 70, 121, 289, 767, 810 |
| BstMCI | CGRYCG | 1 cut(s) | 73 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 218, 350, 479, 488, 560, 611, 789 |
| BstNI | CCWGG | 2 cut(s) | 385, 765 |
| BstNSI | RCATGY | 1 cut(s) | 508 |
| BstSCI | CCNGG | 2 cut(s) | 383, 763 |
| BstSFI | CTRYAG | 1 cut(s) | 444 |
| BstSLI | GKGCMC | 2 cut(s) | 616, 794 |
| BstV1I | GCAGC | 2 cut(s) | 475, 770 |
| BstX2I | RGATCY | 1 cut(s) | 767 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 499 |
| BstYI | RGATCY | 1 cut(s) | 767 |
| BsuRI | GGCC | 2 cut(s) | 482, 713 |
| BtgI | CCRYGG | 1 cut(s) | 738 |
| BtrI | CACGTC | 1 cut(s) | 253 |
| BtsCI | GGATG | 3 cut(s) | 643, 658, 736 |
| BtsIMutI | CAGTG | 1 cut(s) | 668 |
| Cac8I | GCNNGC | 4 cut(s) | 98, 459, 579, 616 |
| CfoI | GCGC | 1 cut(s) | 44 |
| Cfr10I | RCCGGY | 1 cut(s) | 482 |
| Cfr13I | GGNCC | 1 cut(s) | 232 |
| CseI | GACGC | 3 cut(s) | 118, 531, 754 |
| Csp6I | GTAC | 1 cut(s) | 735 |
| CviAII | CATG | 4 cut(s) | 463, 505, 709, 787 |
| CviQI | GTAC | 1 cut(s) | 735 |
| DdeI | CTNAG | 4 cut(s) | 396, 411, 619, 660 |
| DpnI | GATC | 5 cut(s) | 72, 123, 291, 769, 812 |
| DpnII | GATC | 5 cut(s) | 70, 121, 289, 767, 810 |
| DraI | TTTAAA | 1 cut(s) | 436 |
| EaeI | YGGCCR | 1 cut(s) | 711 |
| Eam1104I | CTCTTC | 3 cut(s) | 285, 395, 813 |
| EarI | CTCTTC | 3 cut(s) | 285, 395, 813 |
| EciI | GGCGGA | 1 cut(s) | 665 |
| Eco24I | GRGCYC | 2 cut(s) | 524, 755 |
| Eco47I | GGWCC | 1 cut(s) | 232 |
| Eco57I | CTGAAG | 1 cut(s) | 311 |
| Eco88I | CYCGRG | 2 cut(s) | 236, 836 |
| EcoO109I | RGGNCCY | 1 cut(s) | 232 |
| EcoRI | GAATTC | 1 cut(s) | 53 |
| EcoRII | CCWGG | 2 cut(s) | 383, 763 |
| EcoT38I | GRGCYC | 2 cut(s) | 524, 755 |
| Esp3I | CGTCTC | 1 cut(s) | 259 |
| FaeI | CATG | 4 cut(s) | 466, 508, 712, 790 |
| FaqI | GGGAC | 2 cut(s) | 245, 529 |
| FatI | CATG | 4 cut(s) | 462, 504, 708, 786 |
| FauI | CCCGC | 5 cut(s) | 107, 222, 324, 564, 623 |
| FauNDI | CATATG | 1 cut(s) | 46 |
| FbaI | TGATCA | 1 cut(s) | 810 |
| Fnu4HI | GCNGC | 8 cut(s) | 17, 101, 300, 342, 474, 489, 714, 784 |
| FokI | GGATG | 3 cut(s) | 630, 665, 743 |
| FriOI | GRGCYC | 2 cut(s) | 524, 755 |
| Fsp4HI | GCNGC | 8 cut(s) | 17, 101, 300, 342, 474, 489, 714, 784 |
| FspBI | CTAG | 3 cut(s) | 29, 104, 263 |
| GlaI | GCGC | 1 cut(s) | 43 |
| GluI | GCNGC | 8 cut(s) | 17, 101, 300, 342, 474, 489, 714, 784 |
| GsaI | CCCAGC | 1 cut(s) | 9 |
| HaeIII | GGCC | 2 cut(s) | 482, 713 |
| HapII | CCGG | 2 cut(s) | 483, 647 |
| HgaI | GACGC | 3 cut(s) | 118, 531, 754 |
| HhaI | GCGC | 1 cut(s) | 44 |
| Hin1I | GRCGYC | 1 cut(s) | 746 |
| Hin1II | CATG | 4 cut(s) | 466, 508, 712, 790 |
| Hin6I | GCGC | 1 cut(s) | 42 |
| HinP1I | GCGC | 1 cut(s) | 42 |
| HinfI | GANTC | 6 cut(s) | 32, 322, 335, 557, 656, 667 |
| HpaII | CCGG | 2 cut(s) | 483, 647 |
| HphI | GGTGA | 5 cut(s) | 80, 370, 547, 754, 820 |
| Hpy166II | GTNNAC | 1 cut(s) | 666 |
| Hpy188I | TCNGA | 4 cut(s) | 126, 412, 688, 772 |
| Hpy188III | TCNNGA | 4 cut(s) | 29, 58, 74, 836 |
| Hpy8I | GTNNAC | 1 cut(s) | 666 |
| HpyAV | CCTTC | 3 cut(s) | 46, 421, 472 |
| HpyCH4III | ACNGT | 2 cut(s) | 153, 739 |
| HpyCH4IV | ACGT | 1 cut(s) | 252 |
| HpyCH4V | TGCA | 3 cut(s) | 148, 446, 786 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 218, 350, 479, 488, 560, 611, 789 |
| HpyF3I | CTNAG | 4 cut(s) | 396, 411, 619, 660 |
| HpySE526I | ACGT | 1 cut(s) | 252 |
| Hsp92I | GRCGYC | 1 cut(s) | 746 |
| Hsp92II | CATG | 4 cut(s) | 466, 508, 712, 790 |
| HspAI | GCGC | 1 cut(s) | 42 |
| KpnI | GGTACC | 1 cut(s) | 738 |
| Ksp22I | TGATCA | 1 cut(s) | 810 |
| Kzo9I | GATC | 5 cut(s) | 70, 121, 289, 767, 810 |
| LguI | GCTCTTC | 2 cut(s) | 285, 395 |
| LmnI | GCTCC | 4 cut(s) | 126, 527, 574, 766 |
| Lsp1109I | GCAGC | 2 cut(s) | 475, 770 |
| LweI | GCATC | 1 cut(s) | 652 |
| MaeI | CTAG | 3 cut(s) | 29, 104, 263 |
| MaeII | ACGT | 1 cut(s) | 252 |
| MaeIII | GTNAC | 1 cut(s) | 742 |
| MalI | GATC | 5 cut(s) | 72, 123, 291, 769, 812 |
| MbiI | CCGCTC | 7 cut(s) | 100, 135, 229, 241, 618, 728, 761 |
| MboI | GATC | 5 cut(s) | 70, 121, 289, 767, 810 |
| MboII | GAAGA | 4 cut(s) | 272, 317, 412, 830 |
| MflI | RGATCY | 1 cut(s) | 767 |
| MhlI | GDGCHC | 4 cut(s) | 524, 616, 755, 794 |
| MluCI | AATT | 4 cut(s) | 53, 315, 496, 841 |
| MlyI | GAGTC | 4 cut(s) | 26, 344, 566, 661 |
| MmeI | TCCRAC | 2 cut(s) | 99, 348 |
| MseI | TTAA | 2 cut(s) | 309, 435 |
| MspA1I | CMGCKG | 4 cut(s) | 331, 563, 571, 802 |
| MspI | CCGG | 2 cut(s) | 483, 647 |
| MspR9I | CCNGG | 2 cut(s) | 385, 765 |
| MssI | GTTTAAAC | 1 cut(s) | 436 |
| MvaI | CCWGG | 2 cut(s) | 385, 765 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 218, 350, 479, 488, 560, 611, 789 |
| NdeI | CATATG | 1 cut(s) | 46 |
| NdeII | GATC | 5 cut(s) | 70, 121, 289, 767, 810 |
| NlaIII | CATG | 4 cut(s) | 466, 508, 712, 790 |
| NlaIV | GGNNCC | 7 cut(s) | 15, 233, 523, 576, 613, 736, 793 |
| NmeAIII | GCCGAG | 3 cut(s) | 146, 580, 774 |
| NmuCI | GTSAC | 1 cut(s) | 742 |
| NspI | RCATGY | 1 cut(s) | 508 |
| PaeR7I | CTCGAG | 1 cut(s) | 236 |
| PciI | ACATGT | 1 cut(s) | 504 |
| PciSI | GCTCTTC | 2 cut(s) | 285, 395 |
| PfeI | GAWTC | 2 cut(s) | 322, 656 |
| PflFI | GACNNNGTC | 1 cut(s) | 251 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 531 |
| PfoI | TCCNGGA | 1 cut(s) | 763 |
| PkrI | GCNGC | 8 cut(s) | 18, 102, 301, 343, 475, 490, 715, 785 |
| Ple19I | CGATCG | 1 cut(s) | 73 |
| PleI | GAGTC | 4 cut(s) | 26, 343, 565, 661 |
| PmeI | GTTTAAAC | 1 cut(s) | 436 |
| PpsI | GAGTC | 4 cut(s) | 26, 343, 565, 661 |
| PpuMI | RGGWCCY | 1 cut(s) | 232 |
| PscI | ACATGT | 1 cut(s) | 504 |
| Psp5II | RGGWCCY | 1 cut(s) | 232 |
| Psp6I | CCWGG | 2 cut(s) | 383, 763 |
| PspFI | CCCAGC | 1 cut(s) | 5 |
| PspGI | CCWGG | 2 cut(s) | 383, 763 |
| PspN4I | GGNNCC | 7 cut(s) | 15, 233, 523, 576, 613, 736, 793 |
| PspPI | GGNCC | 1 cut(s) | 232 |
| PspPPI | RGGWCCY | 1 cut(s) | 232 |
| PspXI | VCTCGAGB | 1 cut(s) | 236 |
| PstI | CTGCAG | 1 cut(s) | 448 |
| PsuI | RGATCY | 1 cut(s) | 767 |
| PsyI | GACNNNGTC | 1 cut(s) | 251 |
| PvuI | CGATCG | 1 cut(s) | 73 |
| PvuII | CAGCTG | 2 cut(s) | 563, 802 |
| RsaI | GTAC | 1 cut(s) | 736 |
| RsaNI | GTAC | 1 cut(s) | 735 |
| SapI | GCTCTTC | 2 cut(s) | 285, 395 |
| SaqAI | TTAA | 2 cut(s) | 309, 435 |
| SatI | GCNGC | 8 cut(s) | 17, 101, 300, 342, 474, 489, 714, 784 |
| Sau3AI | GATC | 5 cut(s) | 70, 121, 289, 767, 810 |
| Sau96I | GGNCC | 1 cut(s) | 232 |
| SchI | GAGTC | 4 cut(s) | 26, 344, 566, 661 |
| ScrFI | CCNGG | 2 cut(s) | 385, 765 |
| SduI | GDGCHC | 4 cut(s) | 524, 616, 755, 794 |
| SfaNI | GCATC | 1 cut(s) | 652 |
| SfcI | CTRYAG | 1 cut(s) | 444 |
| Sfr274I | CTCGAG | 1 cut(s) | 236 |
| SinI | GGWCC | 1 cut(s) | 232 |
| SlaI | CTCGAG | 1 cut(s) | 236 |
| SmlI | CTYRAG | 3 cut(s) | 236, 389, 600 |
| SmoI | CTYRAG | 3 cut(s) | 236, 389, 600 |
| Sse9I | AATT | 4 cut(s) | 53, 315, 496, 841 |
| SspMI | CTAG | 3 cut(s) | 29, 104, 263 |
| StyD4I | CCNGG | 2 cut(s) | 383, 763 |
| TaaI | ACNGT | 2 cut(s) | 153, 739 |
| TaiI | ACGT | 1 cut(s) | 255 |
| TaqI | TCGA | 3 cut(s) | 137, 237, 528 |
| TasI | AATT | 4 cut(s) | 53, 315, 496, 841 |
| TauI | GCSGC | 6 cut(s) | 19, 103, 302, 344, 476, 716 |
| TfiI | GAWTC | 2 cut(s) | 322, 656 |
| Tru1I | TTAA | 2 cut(s) | 309, 435 |
| Tru9I | TTAA | 2 cut(s) | 309, 435 |
| TscAI | CASTG | 1 cut(s) | 668 |
| TseFI | GTSAC | 1 cut(s) | 742 |
| TseI | GCWGC | 2 cut(s) | 488, 783 |
| Tsp45I | GTSAC | 1 cut(s) | 742 |
| TspDTI | ATGAA | 2 cut(s) | 697, 831 |
| TspGWI | ACGGA | 1 cut(s) | 412 |
| TspRI | CASTG | 1 cut(s) | 668 |
| Tth111I | GACNNNGTC | 1 cut(s) | 251 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 531 |
| VpaK11BI | GGWCC | 1 cut(s) | 232 |
| XapI | RAATTY | 1 cut(s) | 53 |
| XbaI | TCTAGA | 1 cut(s) | 28 |
| XceI | RCATGY | 1 cut(s) | 508 |
| XhoI | CTCGAG | 1 cut(s) | 236 |
| XspI | CTAG | 3 cut(s) | 29, 104, 263 |