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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 142 |
| AccB1I | GGYRCC | 1 cut(s) | 247 |
| AccBSI | CCGCTC | 2 cut(s) | 310, 337 |
| AccII | CGCG | 4 cut(s) | 370, 591, 639, 665 |
| AcoI | YGGCCR | 1 cut(s) | 606 |
| AcuI | CTGAAG | 1 cut(s) | 382 |
| AcyI | GRCGYC | 2 cut(s) | 248, 452 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 102, 472, 615 |
| AflIII | ACRYGT | 2 cut(s) | 438, 637 |
| AgsI | TTSAA | 2 cut(s) | 38, 302 |
| AjnI | CCWGG | 2 cut(s) | 62, 621 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 299, 331 |
| AluBI | AGCT | 3 cut(s) | 402, 481, 598 |
| AluI | AGCT | 3 cut(s) | 402, 481, 598 |
| Alw21I | GWGCWC | 1 cut(s) | 483 |
| Alw26I | GTCTC | 4 cut(s) | 150, 506, 526, 646 |
| AoxI | GGCC | 3 cut(s) | 186, 204, 606 |
| ApaI | GGGCCC | 1 cut(s) | 190 |
| ApeKI | GCWGC | 1 cut(s) | 460 |
| AspLEI | GCGC | 6 cut(s) | 118, 132, 250, 289, 372, 667 |
| AspS9I | GGNCC | 6 cut(s) | 20, 93, 186, 187, 205, 619 |
| AsuC2I | CCSGG | 1 cut(s) | 466 |
| AsuII | TTCGAA | 1 cut(s) | 221 |
| AvaII | GGWCC | 3 cut(s) | 20, 93, 619 |
| BaeGI | GKGCMC | 1 cut(s) | 190 |
| BanI | GGYRCC | 1 cut(s) | 247 |
| BanII | GRGCYC | 2 cut(s) | 190, 483 |
| Bbv12I | GWGCWC | 1 cut(s) | 483 |
| BbvI | GCAGC | 1 cut(s) | 472 |
| BccI | CCATC | 1 cut(s) | 617 |
| BceAI | ACGGC | 2 cut(s) | 153, 393 |
| BciT130I | CCWGG | 2 cut(s) | 64, 623 |
| BcnI | CCSGG | 1 cut(s) | 466 |
| BcoDI | GTCTC | 4 cut(s) | 150, 506, 526, 646 |
| BfaI | CTAG | 1 cut(s) | 266 |
| BfoI | RGCGCY | 3 cut(s) | 119, 133, 251 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 212 |
| BisI | GCNGC | 7 cut(s) | 99, 231, 338, 450, 461, 592, 606 |
| BlsI | GCNGC | 7 cut(s) | 100, 232, 339, 451, 462, 593, 607 |
| Bme1390I | CCNGG | 3 cut(s) | 64, 466, 623 |
| Bme18I | GGWCC | 3 cut(s) | 20, 93, 619 |
| BmgT120I | GGNCC | 6 cut(s) | 20, 93, 186, 187, 205, 619 |
| BmiI | GGNNCC | 7 cut(s) | 72, 107, 187, 188, 216, 249, 620 |
| BmrFI | CCNGG | 3 cut(s) | 64, 466, 623 |
| BpmI | CTGGAG | 3 cut(s) | 140, 488, 644 |
| Bpu10I | CCTNAGC | 1 cut(s) | 482 |
| Bpu14I | TTCGAA | 1 cut(s) | 221 |
| BpuMI | CCSGG | 1 cut(s) | 466 |
| BsaHI | GRCGYC | 2 cut(s) | 248, 452 |
| BsaI | GGTCTC | 1 cut(s) | 506 |
| BsaJI | CCNNGG | 2 cut(s) | 63, 464 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 156, 186, 299, 329, 533, 563 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 102, 472, 615 |
| Bse118I | RCCGGY | 1 cut(s) | 40 |
| Bse1I | ACTGG | 1 cut(s) | 77 |
| BseBI | CCWGG | 2 cut(s) | 64, 623 |
| BseDI | CCNNGG | 2 cut(s) | 63, 464 |
| BseGI | GGATG | 1 cut(s) | 609 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 102, 472, 615 |
| BseMII | CTCAG | 1 cut(s) | 496 |
| BseNI | ACTGG | 1 cut(s) | 77 |
| BseSI | GKGCMC | 1 cut(s) | 190 |
| BseXI | GCAGC | 1 cut(s) | 472 |
| BseYI | CCCAGC | 2 cut(s) | 101, 340 |
| Bsh1236I | CGCG | 4 cut(s) | 370, 591, 639, 665 |
| BshFI | GGCC | 3 cut(s) | 188, 206, 608 |
| BshNI | GGYRCC | 1 cut(s) | 247 |
| BsiHKAI | GWGCWC | 1 cut(s) | 483 |
| BsiSI | CCGG | 5 cut(s) | 41, 133, 466, 539, 613 |
| BslFI | GGGAC | 1 cut(s) | 632 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 102, 472, 615 |
| BsmAI | GTCTC | 4 cut(s) | 150, 506, 526, 646 |
| BsmBI | CGTCTC | 1 cut(s) | 646 |
| BsmFI | GGGAC | 1 cut(s) | 632 |
| BsnI | GGCC | 3 cut(s) | 188, 206, 608 |
| Bso31I | GGTCTC | 1 cut(s) | 506 |
| Bsp119I | TTCGAA | 1 cut(s) | 221 |
| Bsp120I | GGGCCC | 1 cut(s) | 186 |
| Bsp1286I | GDGCHC | 2 cut(s) | 190, 483 |
| Bsp143I | GATC | 1 cut(s) | 660 |
| BspANI | GGCC | 3 cut(s) | 188, 206, 608 |
| BspCNI | CTCAG | 1 cut(s) | 495 |
| BspFNI | CGCG | 4 cut(s) | 370, 591, 639, 665 |
| BspLI | GGNNCC | 7 cut(s) | 72, 107, 187, 188, 216, 249, 620 |
| BspQI | GCTCTTC | 1 cut(s) | 471 |
| BspT104I | TTCGAA | 1 cut(s) | 221 |
| BspT107I | GGYRCC | 1 cut(s) | 247 |
| BspTNI | GGTCTC | 1 cut(s) | 506 |
| BsrBI | CCGCTC | 2 cut(s) | 310, 337 |
| BsrFI | RCCGGY | 1 cut(s) | 40 |
| BsrI | ACTGG | 1 cut(s) | 77 |
| BssAI | RCCGGY | 1 cut(s) | 40 |
| BssECI | CCNNGG | 2 cut(s) | 63, 464 |
| BssMI | GATC | 1 cut(s) | 660 |
| BssNI | GRCGYC | 2 cut(s) | 248, 452 |
| Bst2UI | CCWGG | 2 cut(s) | 64, 623 |
| Bst4CI | ACNGT | 1 cut(s) | 256 |
| Bst6I | CTCTTC | 3 cut(s) | 153, 326, 471 |
| BstACI | GRCGYC | 2 cut(s) | 248, 452 |
| BstBI | TTCGAA | 1 cut(s) | 221 |
| BstC8I | GCNNGC | 6 cut(s) | 6, 190, 335, 361, 589, 596 |
| BstDEI | CTNAG | 1 cut(s) | 482 |
| BstF5I | GGATG | 1 cut(s) | 609 |
| BstFNI | CGCG | 4 cut(s) | 370, 591, 639, 665 |
| BstH2I | RGCGCY | 3 cut(s) | 119, 133, 251 |
| BstHHI | GCGC | 6 cut(s) | 118, 132, 250, 289, 372, 667 |
| BstKTI | GATC | 1 cut(s) | 663 |
| BstMAI | GTCTC | 4 cut(s) | 150, 506, 526, 646 |
| BstMBI | GATC | 1 cut(s) | 660 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 212, 284, 369 |
| BstNI | CCWGG | 2 cut(s) | 64, 623 |
| BstNSI | RCATGY | 1 cut(s) | 442 |
| BstSCI | CCNGG | 3 cut(s) | 62, 464, 621 |
| BstSLI | GKGCMC | 1 cut(s) | 190 |
| BstUI | CGCG | 4 cut(s) | 370, 591, 639, 665 |
| BstV1I | GCAGC | 1 cut(s) | 472 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 17 |
| BsuRI | GGCC | 3 cut(s) | 188, 206, 608 |
| BtsCI | GGATG | 1 cut(s) | 609 |
| BtsIMutI | CAGTG | 2 cut(s) | 84, 265 |
| Cac8I | GCNNGC | 6 cut(s) | 6, 190, 335, 361, 589, 596 |
| CfoI | GCGC | 6 cut(s) | 118, 132, 250, 289, 372, 667 |
| Cfr10I | RCCGGY | 1 cut(s) | 40 |
| Cfr13I | GGNCC | 6 cut(s) | 20, 93, 186, 187, 205, 619 |
| CseI | GACGC | 3 cut(s) | 441, 593, 628 |
| CviAII | CATG | 1 cut(s) | 439 |
| DdeI | CTNAG | 1 cut(s) | 482 |
| DinI | GGCGCC | 1 cut(s) | 249 |
| DpnI | GATC | 1 cut(s) | 662 |
| DpnII | GATC | 1 cut(s) | 660 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 142 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 142 |
| EaeI | YGGCCR | 1 cut(s) | 606 |
| Eam1104I | CTCTTC | 3 cut(s) | 153, 326, 471 |
| EarI | CTCTTC | 3 cut(s) | 153, 326, 471 |
| EciI | GGCGGA | 3 cut(s) | 59, 533, 581 |
| Ecl136II | GAGCTC | 1 cut(s) | 481 |
| Eco24I | GRGCYC | 2 cut(s) | 190, 483 |
| Eco31I | GGTCTC | 1 cut(s) | 506 |
| Eco47I | GGWCC | 3 cut(s) | 20, 93, 619 |
| Eco53kI | GAGCTC | 1 cut(s) | 481 |
| Eco57I | CTGAAG | 1 cut(s) | 382 |
| EcoICRI | GAGCTC | 1 cut(s) | 481 |
| EcoO109I | RGGNCCY | 2 cut(s) | 186, 619 |
| EcoRII | CCWGG | 2 cut(s) | 62, 621 |
| EcoT38I | GRGCYC | 2 cut(s) | 190, 483 |
| EgeI | GGCGCC | 1 cut(s) | 249 |
| EheI | GGCGCC | 1 cut(s) | 249 |
| Esp3I | CGTCTC | 1 cut(s) | 646 |
| FaeI | CATG | 1 cut(s) | 442 |
| FaiI | YATR | 5 cut(s) | 285, 296, 365, 440, 579 |
| FaqI | GGGAC | 1 cut(s) | 632 |
| FatI | CATG | 1 cut(s) | 438 |
| FauI | CCCGC | 5 cut(s) | 197, 303, 352, 418, 609 |
| Fnu4HI | GCNGC | 7 cut(s) | 99, 231, 338, 450, 461, 592, 606 |
| FokI | GGATG | 1 cut(s) | 596 |
| FriOI | GRGCYC | 2 cut(s) | 190, 483 |
| Fsp4HI | GCNGC | 7 cut(s) | 99, 231, 338, 450, 461, 592, 606 |
| FspBI | CTAG | 1 cut(s) | 266 |
| GlaI | GCGC | 6 cut(s) | 117, 131, 249, 288, 371, 666 |
| GluI | GCNGC | 7 cut(s) | 99, 231, 338, 450, 461, 592, 606 |
| GsaI | CCCAGC | 2 cut(s) | 105, 344 |
| GsuI | CTGGAG | 3 cut(s) | 140, 488, 644 |
| HaeII | RGCGCY | 3 cut(s) | 119, 133, 251 |
| HaeIII | GGCC | 3 cut(s) | 188, 206, 608 |
| HapII | CCGG | 5 cut(s) | 41, 133, 466, 539, 613 |
| HgaI | GACGC | 3 cut(s) | 441, 593, 628 |
| HhaI | GCGC | 6 cut(s) | 118, 132, 250, 289, 372, 667 |
| Hin1I | GRCGYC | 2 cut(s) | 248, 452 |
| Hin1II | CATG | 1 cut(s) | 442 |
| Hin6I | GCGC | 6 cut(s) | 116, 130, 248, 287, 370, 665 |
| HinP1I | GCGC | 6 cut(s) | 116, 130, 248, 287, 370, 665 |
| HindIII | AAGCTT | 1 cut(s) | 596 |
| HinfI | GANTC | 2 cut(s) | 143, 269 |
| HpaII | CCGG | 5 cut(s) | 41, 133, 466, 539, 613 |
| Hpy166II | GTNNAC | 1 cut(s) | 263 |
| Hpy188I | TCNGA | 1 cut(s) | 497 |
| Hpy188III | TCNNGA | 2 cut(s) | 149, 505 |
| Hpy8I | GTNNAC | 1 cut(s) | 263 |
| Hpy99I | CGWCG | 2 cut(s) | 379, 457 |
| HpyAV | CCTTC | 5 cut(s) | 106, 196, 228, 296, 406 |
| HpyCH4III | ACNGT | 1 cut(s) | 256 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 212, 284, 369 |
| HpyF3I | CTNAG | 1 cut(s) | 482 |
| Hsp92I | GRCGYC | 2 cut(s) | 248, 452 |
| Hsp92II | CATG | 1 cut(s) | 442 |
| HspAI | GCGC | 6 cut(s) | 116, 130, 248, 287, 370, 665 |
| KasI | GGCGCC | 1 cut(s) | 247 |
| Kzo9I | GATC | 1 cut(s) | 660 |
| LguI | GCTCTTC | 1 cut(s) | 471 |
| LmnI | GCTCC | 4 cut(s) | 105, 220, 307, 652 |
| Lsp1109I | GCAGC | 1 cut(s) | 472 |
| MaeI | CTAG | 1 cut(s) | 266 |
| MaeIII | GTNAC | 2 cut(s) | 58, 572 |
| MalI | GATC | 1 cut(s) | 662 |
| MbiI | CCGCTC | 2 cut(s) | 310, 337 |
| MboI | GATC | 1 cut(s) | 660 |
| MboII | GAAGA | 6 cut(s) | 59, 170, 211, 313, 488, 500 |
| MfeI | CAATTG | 1 cut(s) | 381 |
| MhlI | GDGCHC | 2 cut(s) | 190, 483 |
| MluCI | AATT | 1 cut(s) | 381 |
| MluI | ACGCGT | 1 cut(s) | 637 |
| Mly113I | GGCGCC | 1 cut(s) | 248 |
| MlyI | GAGTC | 2 cut(s) | 152, 263 |
| MmeI | TCCRAC | 1 cut(s) | 630 |
| MseI | TTAA | 1 cut(s) | 600 |
| MslI | CAYNNNNRTG | 1 cut(s) | 443 |
| MspA1I | CMGCKG | 1 cut(s) | 101 |
| MspI | CCGG | 5 cut(s) | 41, 133, 466, 539, 613 |
| MspR9I | CCNGG | 3 cut(s) | 64, 466, 623 |
| MunI | CAATTG | 1 cut(s) | 381 |
| MvaI | CCWGG | 2 cut(s) | 64, 623 |
| MvnI | CGCG | 4 cut(s) | 370, 591, 639, 665 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 212, 284, 369 |
| NarI | GGCGCC | 1 cut(s) | 248 |
| NciI | CCSGG | 1 cut(s) | 466 |
| NdeII | GATC | 1 cut(s) | 660 |
| NlaIII | CATG | 1 cut(s) | 442 |
| NlaIV | GGNNCC | 7 cut(s) | 72, 107, 187, 188, 216, 249, 620 |
| NmeAIII | GCCGAG | 2 cut(s) | 304, 383 |
| NmuCI | GTSAC | 2 cut(s) | 58, 572 |
| NspI | RCATGY | 1 cut(s) | 442 |
| NspV | TTCGAA | 1 cut(s) | 221 |
| PciI | ACATGT | 1 cut(s) | 438 |
| PciSI | GCTCTTC | 1 cut(s) | 471 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 441 |
| PkrI | GCNGC | 7 cut(s) | 100, 232, 339, 451, 462, 593, 607 |
| PleI | GAGTC | 2 cut(s) | 151, 263 |
| PluTI | GGCGCC | 1 cut(s) | 251 |
| PpsI | GAGTC | 2 cut(s) | 151, 263 |
| PpuMI | RGGWCCY | 1 cut(s) | 619 |
| PscI | ACATGT | 1 cut(s) | 438 |
| Psp124BI | GAGCTC | 1 cut(s) | 483 |
| Psp5II | RGGWCCY | 1 cut(s) | 619 |
| Psp6I | CCWGG | 2 cut(s) | 62, 621 |
| PspFI | CCCAGC | 2 cut(s) | 101, 340 |
| PspGI | CCWGG | 2 cut(s) | 62, 621 |
| PspN4I | GGNNCC | 7 cut(s) | 72, 107, 187, 188, 216, 249, 620 |
| PspOMI | GGGCCC | 1 cut(s) | 186 |
| PspPI | GGNCC | 6 cut(s) | 20, 93, 186, 187, 205, 619 |
| PspPPI | RGGWCCY | 1 cut(s) | 619 |
| RseI | CAYNNNNRTG | 1 cut(s) | 443 |
| SacI | GAGCTC | 1 cut(s) | 483 |
| SapI | GCTCTTC | 1 cut(s) | 471 |
| SaqAI | TTAA | 1 cut(s) | 600 |
| SatI | GCNGC | 7 cut(s) | 99, 231, 338, 450, 461, 592, 606 |
| Sau3AI | GATC | 1 cut(s) | 660 |
| Sau96I | GGNCC | 6 cut(s) | 20, 93, 186, 187, 205, 619 |
| SchI | GAGTC | 2 cut(s) | 152, 263 |
| ScrFI | CCNGG | 3 cut(s) | 64, 466, 623 |
| SduI | GDGCHC | 2 cut(s) | 190, 483 |
| SfoI | GGCGCC | 1 cut(s) | 249 |
| SfuI | TTCGAA | 1 cut(s) | 221 |
| SinI | GGWCC | 3 cut(s) | 20, 93, 619 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 443 |
| Sse9I | AATT | 1 cut(s) | 381 |
| SspDI | GGCGCC | 1 cut(s) | 247 |
| SspMI | CTAG | 1 cut(s) | 266 |
| SstI | GAGCTC | 1 cut(s) | 483 |
| StyD4I | CCNGG | 3 cut(s) | 62, 464, 621 |
| TaaI | ACNGT | 1 cut(s) | 256 |
| TaqI | TCGA | 3 cut(s) | 221, 455, 546 |
| TasI | AATT | 1 cut(s) | 381 |
| TauI | GCSGC | 6 cut(s) | 101, 233, 340, 452, 594, 608 |
| Tru1I | TTAA | 1 cut(s) | 600 |
| Tru9I | TTAA | 1 cut(s) | 600 |
| TscAI | CASTG | 2 cut(s) | 84, 265 |
| TseFI | GTSAC | 2 cut(s) | 58, 572 |
| TseI | GCWGC | 1 cut(s) | 460 |
| Tsp45I | GTSAC | 2 cut(s) | 58, 572 |
| TspDTI | ATGAA | 1 cut(s) | 648 |
| TspRI | CASTG | 2 cut(s) | 84, 265 |
| VpaK11BI | GGWCC | 3 cut(s) | 20, 93, 619 |
| XceI | RCATGY | 1 cut(s) | 442 |
| XspI | CTAG | 1 cut(s) | 266 |