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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 307 |
| AbsI | CCTCGAGG | 1 cut(s) | 325 |
| Acc36I | ACCTGC | 2 cut(s) | 307, 906 |
| AccB1I | GGYRCC | 2 cut(s) | 731, 767 |
| AccBSI | CCGCTC | 1 cut(s) | 618 |
| AclWI | GGATC | 2 cut(s) | 56, 378 |
| AcoI | YGGCCR | 1 cut(s) | 864 |
| AcsI | RAATTY | 1 cut(s) | 557 |
| AcuI | CTGAAG | 2 cut(s) | 171, 515 |
| AcyI | GRCGYC | 1 cut(s) | 732 |
| AfaI | GTAC | 3 cut(s) | 204, 662, 749 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 220, 348, 508, 622, 764, 796, 873, 959 |
| AgeI | ACCGGT | 2 cut(s) | 764, 955 |
| AgsI | TTSAA | 1 cut(s) | 646 |
| AleI | CACNNNNGTG | 1 cut(s) | 890 |
| AluBI | AGCT | 4 cut(s) | 409, 446, 488, 605 |
| AluI | AGCT | 4 cut(s) | 409, 446, 488, 605 |
| Alw26I | GTCTC | 2 cut(s) | 86, 474 |
| AlwI | GGATC | 2 cut(s) | 56, 378 |
| Ama87I | CYCGRG | 4 cut(s) | 215, 325, 348, 873 |
| AoxI | GGCC | 4 cut(s) | 42, 254, 329, 864 |
| ApeKI | GCWGC | 7 cut(s) | 29, 106, 437, 456, 701, 974, 977 |
| ApoI | RAATTY | 1 cut(s) | 557 |
| AsiGI | ACCGGT | 2 cut(s) | 764, 955 |
| AspLEI | GCGC | 1 cut(s) | 734 |
| AspS9I | GGNCC | 5 cut(s) | 43, 254, 499, 794, 816 |
| AsuC2I | CCSGG | 1 cut(s) | 595 |
| AsuHPI | GGTGA | 6 cut(s) | 91, 235, 331, 580, 791, 904 |
| AvaI | CYCGRG | 4 cut(s) | 215, 325, 348, 873 |
| AvaII | GGWCC | 3 cut(s) | 499, 794, 816 |
| BaeGI | GKGCMC | 2 cut(s) | 240, 987 |
| BanI | GGYRCC | 2 cut(s) | 731, 767 |
| BanII | GRGCYC | 1 cut(s) | 905 |
| BauI | CACGAG | 1 cut(s) | 441 |
| BbvI | GCAGC | 7 cut(s) | 16, 93, 424, 443, 713, 961, 964 |
| BccI | CCATC | 3 cut(s) | 360, 670, 875 |
| BceAI | ACGGC | 3 cut(s) | 372, 912, 965 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 953, 987 |
| BclI | TGATCA | 1 cut(s) | 922 |
| BcnI | CCSGG | 1 cut(s) | 595 |
| BcoDI | GTCTC | 2 cut(s) | 86, 474 |
| BfaI | CTAG | 4 cut(s) | 74, 410, 693, 938 |
| BfoI | RGCGCY | 1 cut(s) | 735 |
| BfuAI | ACCTGC | 2 cut(s) | 307, 906 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 344 |
| BlpI | GCTNAGC | 1 cut(s) | 810 |
| Bme1390I | CCNGG | 1 cut(s) | 595 |
| Bme18I | GGWCC | 3 cut(s) | 499, 794, 816 |
| BmeT110I | CYCGRG | 4 cut(s) | 215, 325, 348, 873 |
| BmgT120I | GGNCC | 5 cut(s) | 43, 254, 499, 794, 816 |
| BmiI | GGNNCC | 5 cut(s) | 145, 288, 733, 769, 818 |
| BmrFI | CCNGG | 1 cut(s) | 595 |
| BmsI | GCATC | 3 cut(s) | 102, 136, 796 |
| BoxI | GACNNNNGTC | 2 cut(s) | 425, 792 |
| BpmI | CTGGAG | 1 cut(s) | 81 |
| Bpu10I | CCTNAGC | 1 cut(s) | 513 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 810 |
| BpuMI | CCSGG | 1 cut(s) | 595 |
| BsaHI | GRCGYC | 1 cut(s) | 732 |
| BsaJI | CCNNGG | 2 cut(s) | 342, 790 |
| BsaWI | WCCGGW | 3 cut(s) | 764, 796, 955 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 8, 38 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 220, 348, 508, 622, 764, 796, 873, 959 |
| Bse118I | RCCGGY | 2 cut(s) | 764, 955 |
| Bse1I | ACTGG | 4 cut(s) | 172, 367, 745, 771 |
| Bse3DI | GCAATG | 1 cut(s) | 678 |
| BseDI | CCNNGG | 2 cut(s) | 342, 790 |
| BseGI | GGATG | 3 cut(s) | 371, 808, 886 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 220, 348, 508, 622, 764, 796, 873, 959 |
| BseMI | GCAATG | 1 cut(s) | 678 |
| BseMII | CTCAG | 4 cut(s) | 186, 272, 824, 845 |
| BseNI | ACTGG | 4 cut(s) | 172, 367, 745, 771 |
| BseSI | GKGCMC | 2 cut(s) | 240, 987 |
| BseXI | GCAGC | 7 cut(s) | 16, 93, 424, 443, 713, 961, 964 |
| BseYI | CCCAGC | 1 cut(s) | 32 |
| BsgI | GTGCAG | 1 cut(s) | 423 |
| BshFI | GGCC | 4 cut(s) | 44, 256, 331, 866 |
| BshNI | GGYRCC | 2 cut(s) | 731, 767 |
| BshTI | ACCGGT | 2 cut(s) | 764, 955 |
| BsiHKCI | CYCGRG | 4 cut(s) | 215, 325, 348, 873 |
| BsiSI | CCGG | 4 cut(s) | 595, 765, 797, 956 |
| BslFI | GGGAC | 2 cut(s) | 557, 829 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 220, 348, 508, 622, 764, 796, 873, 959 |
| BsmAI | GTCTC | 2 cut(s) | 86, 474 |
| BsmFI | GGGAC | 2 cut(s) | 557, 829 |
| BsmI | GAATGC | 1 cut(s) | 976 |
| BsnI | GGCC | 4 cut(s) | 44, 256, 331, 866 |
| BsoBI | CYCGRG | 4 cut(s) | 215, 325, 348, 873 |
| Bsp1286I | GDGCHC | 3 cut(s) | 240, 905, 987 |
| Bsp143I | GATC | 3 cut(s) | 61, 370, 922 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 810 |
| Bsp19I | CCATGG | 1 cut(s) | 790 |
| BspANI | GGCC | 4 cut(s) | 44, 256, 331, 866 |
| BspCNI | CTCAG | 4 cut(s) | 185, 271, 823, 844 |
| BspLI | GGNNCC | 5 cut(s) | 145, 288, 733, 769, 818 |
| BspMI | ACCTGC | 2 cut(s) | 307, 906 |
| BspPI | GGATC | 2 cut(s) | 56, 378 |
| BspT107I | GGYRCC | 2 cut(s) | 731, 767 |
| BsrBI | CCGCTC | 1 cut(s) | 618 |
| BsrDI | GCAATG | 1 cut(s) | 678 |
| BsrFI | RCCGGY | 2 cut(s) | 764, 955 |
| BsrI | ACTGG | 4 cut(s) | 172, 367, 745, 771 |
| BssAI | RCCGGY | 2 cut(s) | 764, 955 |
| BssECI | CCNNGG | 2 cut(s) | 342, 790 |
| BssMI | GATC | 3 cut(s) | 61, 370, 922 |
| BssNI | GRCGYC | 1 cut(s) | 732 |
| BssSI | CACGAG | 1 cut(s) | 441 |
| BssT1I | CCWWGG | 1 cut(s) | 790 |
| Bst2BI | CACGAG | 1 cut(s) | 441 |
| Bst4CI | ACNGT | 3 cut(s) | 55, 143, 248 |
| BstACI | GRCGYC | 1 cut(s) | 732 |
| BstC8I | GCNNGC | 4 cut(s) | 240, 669, 901, 913 |
| BstDEI | CTNAG | 6 cut(s) | 172, 258, 513, 519, 810, 831 |
| BstDSI | CCRYGG | 1 cut(s) | 790 |
| BstEII | GGTNACC | 1 cut(s) | 319 |
| BstF5I | GGATG | 3 cut(s) | 371, 808, 886 |
| BstH2I | RGCGCY | 1 cut(s) | 735 |
| BstHHI | GCGC | 1 cut(s) | 734 |
| BstKTI | GATC | 3 cut(s) | 64, 373, 925 |
| BstMAI | GTCTC | 2 cut(s) | 86, 474 |
| BstMBI | GATC | 3 cut(s) | 61, 370, 922 |
| BstNSI | RCATGY | 1 cut(s) | 25 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 425, 792 |
| BstPI | GGTNACC | 1 cut(s) | 319 |
| BstSCI | CCNGG | 1 cut(s) | 593 |
| BstSLI | GKGCMC | 2 cut(s) | 240, 987 |
| BstV1I | GCAGC | 7 cut(s) | 16, 93, 424, 443, 713, 961, 964 |
| BsuRI | GGCC | 4 cut(s) | 44, 256, 331, 866 |
| BtgI | CCRYGG | 1 cut(s) | 790 |
| BtsCI | GGATG | 3 cut(s) | 371, 808, 886 |
| BtsIMutI | CAGTG | 1 cut(s) | 778 |
| BveI | ACCTGC | 2 cut(s) | 307, 906 |
| Cac8I | GCNNGC | 4 cut(s) | 240, 669, 901, 913 |
| CfoI | GCGC | 1 cut(s) | 734 |
| Cfr10I | RCCGGY | 2 cut(s) | 764, 955 |
| Cfr13I | GGNCC | 5 cut(s) | 43, 254, 499, 794, 816 |
| CseI | GACGC | 1 cut(s) | 1013 |
| Csp6I | GTAC | 3 cut(s) | 203, 661, 748 |
| CspAI | ACCGGT | 2 cut(s) | 764, 955 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 232, 267, 541, 576 |
| CviAII | CATG | 3 cut(s) | 22, 791, 823 |
| CviQI | GTAC | 3 cut(s) | 203, 661, 748 |
| DdeI | CTNAG | 6 cut(s) | 172, 258, 513, 519, 810, 831 |
| DinI | GGCGCC | 1 cut(s) | 733 |
| DpnI | GATC | 3 cut(s) | 63, 372, 924 |
| DpnII | GATC | 3 cut(s) | 61, 370, 922 |
| EaeI | YGGCCR | 1 cut(s) | 864 |
| Eco130I | CCWWGG | 1 cut(s) | 790 |
| Eco147I | AGGCCT | 1 cut(s) | 331 |
| Eco24I | GRGCYC | 1 cut(s) | 905 |
| Eco47I | GGWCC | 3 cut(s) | 499, 794, 816 |
| Eco57I | CTGAAG | 2 cut(s) | 171, 515 |
| Eco88I | CYCGRG | 4 cut(s) | 215, 325, 348, 873 |
| Eco91I | GGTNACC | 1 cut(s) | 319 |
| EcoO109I | RGGNCCY | 1 cut(s) | 499 |
| EcoO65I | GGTNACC | 1 cut(s) | 319 |
| EcoT14I | CCWWGG | 1 cut(s) | 790 |
| EcoT38I | GRGCYC | 1 cut(s) | 905 |
| EgeI | GGCGCC | 1 cut(s) | 733 |
| EheI | GGCGCC | 1 cut(s) | 733 |
| ErhI | CCWWGG | 1 cut(s) | 790 |
| FaeI | CATG | 3 cut(s) | 25, 794, 826 |
| FaiI | YATR | 9 cut(s) | 23, 27, 296, 485, 792, 824, 860, 890, 927 |
| FaqI | GGGAC | 2 cut(s) | 557, 829 |
| FatI | CATG | 3 cut(s) | 21, 790, 822 |
| FauI | CCCGC | 3 cut(s) | 154, 173, 247 |
| FbaI | TGATCA | 1 cut(s) | 922 |
| FokI | GGATG | 3 cut(s) | 378, 815, 893 |
| FriOI | GRGCYC | 1 cut(s) | 905 |
| FspBI | CTAG | 4 cut(s) | 74, 410, 693, 938 |
| GlaI | GCGC | 1 cut(s) | 733 |
| GsaI | CCCAGC | 1 cut(s) | 36 |
| GsuI | CTGGAG | 1 cut(s) | 81 |
| HaeII | RGCGCY | 1 cut(s) | 735 |
| HaeIII | GGCC | 4 cut(s) | 44, 256, 331, 866 |
| HapII | CCGG | 4 cut(s) | 595, 765, 797, 956 |
| HgaI | GACGC | 1 cut(s) | 1013 |
| HhaI | GCGC | 1 cut(s) | 734 |
| Hin1I | GRCGYC | 1 cut(s) | 732 |
| Hin1II | CATG | 3 cut(s) | 25, 794, 826 |
| Hin6I | GCGC | 1 cut(s) | 732 |
| HinP1I | GCGC | 1 cut(s) | 732 |
| HinfI | GANTC | 4 cut(s) | 94, 532, 545, 943 |
| HpaII | CCGG | 4 cut(s) | 595, 765, 797, 956 |
| HphI | GGTGA | 6 cut(s) | 91, 235, 331, 580, 791, 904 |
| Hpy188I | TCNGA | 5 cut(s) | 91, 175, 261, 622, 922 |
| Hpy188III | TCNNGA | 1 cut(s) | 875 |
| Hpy99I | CGWCG | 3 cut(s) | 140, 143, 252 |
| HpyAV | CCTTC | 4 cut(s) | 214, 256, 490, 682 |
| HpyCH4III | ACNGT | 3 cut(s) | 55, 143, 248 |
| HpyCH4IV | ACGT | 1 cut(s) | 750 |
| HpyCH4V | TGCA | 1 cut(s) | 440 |
| HpyF3I | CTNAG | 6 cut(s) | 172, 258, 513, 519, 810, 831 |
| HpySE526I | ACGT | 1 cut(s) | 750 |
| Hsp92I | GRCGYC | 1 cut(s) | 732 |
| Hsp92II | CATG | 3 cut(s) | 25, 794, 826 |
| HspAI | GCGC | 1 cut(s) | 732 |
| KasI | GGCGCC | 1 cut(s) | 731 |
| Ksp22I | TGATCA | 1 cut(s) | 922 |
| Kzo9I | GATC | 3 cut(s) | 61, 370, 922 |
| LmnI | GCTCC | 1 cut(s) | 195 |
| Lsp1109I | GCAGC | 7 cut(s) | 16, 93, 424, 443, 713, 961, 964 |
| LweI | GCATC | 3 cut(s) | 102, 136, 796 |
| MaeI | CTAG | 4 cut(s) | 74, 410, 693, 938 |
| MaeII | ACGT | 1 cut(s) | 750 |
| MaeIII | GTNAC | 3 cut(s) | 319, 785, 892 |
| MalI | GATC | 3 cut(s) | 63, 372, 924 |
| MbiI | CCGCTC | 1 cut(s) | 618 |
| MboI | GATC | 3 cut(s) | 61, 370, 922 |
| MboII | GAAGA | 2 cut(s) | 443, 634 |
| MhlI | GDGCHC | 3 cut(s) | 240, 905, 987 |
| MluCI | AATT | 2 cut(s) | 557, 706 |
| Mly113I | GGCGCC | 1 cut(s) | 732 |
| MlyI | GAGTC | 2 cut(s) | 88, 539 |
| MmeI | TCCRAC | 2 cut(s) | 558, 778 |
| MslI | CAYNNNNRTG | 1 cut(s) | 890 |
| MspA1I | CMGCKG | 3 cut(s) | 101, 358, 814 |
| MspI | CCGG | 4 cut(s) | 595, 765, 797, 956 |
| MspR9I | CCNGG | 1 cut(s) | 595 |
| Mva1269I | GAATGC | 1 cut(s) | 976 |
| NarI | GGCGCC | 1 cut(s) | 732 |
| NciI | CCSGG | 1 cut(s) | 595 |
| NcoI | CCATGG | 1 cut(s) | 790 |
| NdeII | GATC | 3 cut(s) | 61, 370, 922 |
| NlaIII | CATG | 3 cut(s) | 25, 794, 826 |
| NlaIV | GGNNCC | 5 cut(s) | 145, 288, 733, 769, 818 |
| NmeAIII | GCCGAG | 3 cut(s) | 111, 367, 877 |
| NmuCI | GTSAC | 3 cut(s) | 319, 785, 892 |
| NspI | RCATGY | 1 cut(s) | 25 |
| OliI | CACNNNNGTG | 1 cut(s) | 890 |
| PaeR7I | CTCGAG | 1 cut(s) | 325 |
| PaqCI | CACCTGC | 1 cut(s) | 307 |
| PceI | AGGCCT | 1 cut(s) | 331 |
| PctI | GAATGC | 1 cut(s) | 976 |
| PfeI | GAWTC | 2 cut(s) | 532, 943 |
| PinAI | ACCGGT | 2 cut(s) | 764, 955 |
| PleI | GAGTC | 2 cut(s) | 88, 539 |
| PluTI | GGCGCC | 1 cut(s) | 735 |
| PpsI | GAGTC | 2 cut(s) | 88, 539 |
| PpuMI | RGGWCCY | 1 cut(s) | 499 |
| PshAI | GACNNNNGTC | 2 cut(s) | 425, 792 |
| Psp5II | RGGWCCY | 1 cut(s) | 499 |
| PspEI | GGTNACC | 1 cut(s) | 319 |
| PspFI | CCCAGC | 1 cut(s) | 32 |
| PspN4I | GGNNCC | 5 cut(s) | 145, 288, 733, 769, 818 |
| PspPI | GGNCC | 5 cut(s) | 43, 254, 499, 794, 816 |
| PspPPI | RGGWCCY | 1 cut(s) | 499 |
| PspXI | VCTCGAGB | 1 cut(s) | 325 |
| RsaI | GTAC | 3 cut(s) | 204, 662, 749 |
| RsaNI | GTAC | 3 cut(s) | 203, 661, 748 |
| RseI | CAYNNNNRTG | 1 cut(s) | 890 |
| Sau3AI | GATC | 3 cut(s) | 61, 370, 922 |
| Sau96I | GGNCC | 5 cut(s) | 43, 254, 499, 794, 816 |
| SchI | GAGTC | 2 cut(s) | 88, 539 |
| ScrFI | CCNGG | 1 cut(s) | 595 |
| SduI | GDGCHC | 3 cut(s) | 240, 905, 987 |
| SfaNI | GCATC | 3 cut(s) | 102, 136, 796 |
| SfoI | GGCGCC | 1 cut(s) | 733 |
| Sfr274I | CTCGAG | 1 cut(s) | 325 |
| SgrAI | CRCCGGYG | 2 cut(s) | 764, 955 |
| SinI | GGWCC | 3 cut(s) | 499, 794, 816 |
| SlaI | CTCGAG | 1 cut(s) | 325 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 890 |
| SmlI | CTYRAG | 1 cut(s) | 325 |
| SmoI | CTYRAG | 1 cut(s) | 325 |
| Sse9I | AATT | 2 cut(s) | 557, 706 |
| SseBI | AGGCCT | 1 cut(s) | 331 |
| SspDI | GGCGCC | 1 cut(s) | 731 |
| SspMI | CTAG | 4 cut(s) | 74, 410, 693, 938 |
| StuI | AGGCCT | 1 cut(s) | 331 |
| StyD4I | CCNGG | 1 cut(s) | 593 |
| StyI | CCWWGG | 1 cut(s) | 790 |
| TaaI | ACNGT | 3 cut(s) | 55, 143, 248 |
| TaiI | ACGT | 1 cut(s) | 753 |
| TaqI | TCGA | 3 cut(s) | 326, 381, 473 |
| TasI | AATT | 2 cut(s) | 557, 706 |
| TfiI | GAWTC | 2 cut(s) | 532, 943 |
| TscAI | CASTG | 1 cut(s) | 778 |
| TseFI | GTSAC | 3 cut(s) | 319, 785, 892 |
| TseI | GCWGC | 7 cut(s) | 29, 106, 437, 456, 701, 974, 977 |
| Tsp45I | GTSAC | 3 cut(s) | 319, 785, 892 |
| TspDTI | ATGAA | 1 cut(s) | 366 |
| TspGWI | ACGGA | 1 cut(s) | 419 |
| TspRI | CASTG | 1 cut(s) | 778 |
| VpaK11BI | GGWCC | 3 cut(s) | 499, 794, 816 |
| XapI | RAATTY | 1 cut(s) | 557 |
| XceI | RCATGY | 1 cut(s) | 25 |
| XhoI | CTCGAG | 1 cut(s) | 325 |
| XspI | CTAG | 4 cut(s) | 74, 410, 693, 938 |