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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1855 |
| Acc65I | GGTACC | 1 cut(s) | 1000 |
| AccB1I | GGYRCC | 6 cut(s) | 164, 352, 911, 1000, 1718, 1934 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 370 |
| AccBSI | CCGCTC | 4 cut(s) | 572, 1426, 1489, 1818 |
| AccI | GTMKAC | 1 cut(s) | 414 |
| AccII | CGCG | 8 cut(s) | 595, 597, 612, 744, 1064, 1449, 1610, 1897 |
| AccIII | TCCGGA | 1 cut(s) | 1777 |
| AclWI | GGATC | 2 cut(s) | 629, 774 |
| AcoI | YGGCCR | 5 cut(s) | 306, 1168, 1416, 1611, 1761 |
| AcuI | CTGAAG | 3 cut(s) | 1577, 1614, 1727 |
| AcyI | GRCGYC | 2 cut(s) | 1719, 1812 |
| AfaI | GTAC | 3 cut(s) | 584, 803, 1002 |
| AfeI | AGCGCT | 1 cut(s) | 91 |
| AflIII | ACRYGT | 2 cut(s) | 1248, 1447 |
| AgsI | TTSAA | 6 cut(s) | 501, 716, 935, 1307, 1625, 1633 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1950 |
| AjiI | CACGTC | 1 cut(s) | 17 |
| Alw21I | GWGCWC | 2 cut(s) | 29, 1293 |
| Alw26I | GTCTC | 7 cut(s) | 788, 839, 1154, 1346, 1456, 1803, 1937 |
| AlwI | GGATC | 2 cut(s) | 629, 774 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 983, 1276 |
| Ama87I | CYCGRG | 3 cut(s) | 842, 1103, 1962 |
| Aor13HI | TCCGGA | 1 cut(s) | 1777 |
| Aor51HI | AGCGCT | 1 cut(s) | 91 |
| ApaI | GGGCCC | 1 cut(s) | 1687 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 227, 393 |
| Asp718I | GGTACC | 1 cut(s) | 1000 |
| AsuC2I | CCSGG | 2 cut(s) | 240, 619 |
| AsuHPI | GGTGA | 5 cut(s) | 50, 259, 847, 1051, 1558 |
| AsuII | TTCGAA | 1 cut(s) | 753 |
| AsuNHI | GCTAGC | 1 cut(s) | 95 |
| AvaI | CYCGRG | 3 cut(s) | 842, 1103, 1962 |
| AvaII | GGWCC | 4 cut(s) | 11, 519, 1857, 1968 |
| AxyI | CCTNAGG | 1 cut(s) | 1586 |
| BaeGI | GKGCMC | 1 cut(s) | 1687 |
| BalI | TGGCCA | 2 cut(s) | 1170, 1418 |
| BanI | GGYRCC | 6 cut(s) | 164, 352, 911, 1000, 1718, 1934 |
| BanII | GRGCYC | 4 cut(s) | 29, 245, 1293, 1687 |
| BbsI | GAAGAC | 2 cut(s) | 230, 833 |
| Bbv12I | GWGCWC | 2 cut(s) | 29, 1293 |
| BccI | CCATC | 5 cut(s) | 155, 757, 1230, 1427, 1730 |
| BceAI | ACGGC | 5 cut(s) | 155, 191, 293, 914, 1948 |
| BciVI | GTATCC | 1 cut(s) | 1594 |
| BcnI | CCSGG | 2 cut(s) | 240, 619 |
| BcoDI | GTCTC | 7 cut(s) | 788, 839, 1154, 1346, 1456, 1803, 1937 |
| BfaI | CTAG | 5 cut(s) | 30, 60, 96, 1542, 1688 |
| BfmI | CTRYAG | 1 cut(s) | 1481 |
| BfoI | RGCGCY | 6 cut(s) | 93, 473, 1103, 1117, 1722, 1773 |
| BfuI | GTATCC | 1 cut(s) | 1594 |
| Bme18I | GGWCC | 4 cut(s) | 11, 519, 1857, 1968 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1950 |
| BmeT110I | CYCGRG | 3 cut(s) | 842, 1103, 1962 |
| BmgBI | CACGTC | 1 cut(s) | 17 |
| BmsI | GCATC | 2 cut(s) | 1384, 1741 |
| BmtI | GCTAGC | 1 cut(s) | 99 |
| BpiI | GAAGAC | 2 cut(s) | 230, 833 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 327, 359, 1759, 1791 |
| BpmI | CTGGAG | 3 cut(s) | 140, 812, 1298 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1292, 1371, 1819 |
| Bpu14I | TTCGAA | 1 cut(s) | 753 |
| BpuEI | CTTGAG | 1 cut(s) | 472 |
| BpuMI | CCSGG | 2 cut(s) | 240, 619 |
| BsaAI | YACGTR | 1 cut(s) | 418 |
| BsaHI | GRCGYC | 2 cut(s) | 1719, 1812 |
| BsaI | GGTCTC | 2 cut(s) | 839, 1937 |
| BsaWI | WCCGGW | 2 cut(s) | 231, 1777 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 785, 815 |
| Bse118I | RCCGGY | 4 cut(s) | 1045, 1081, 1116, 1759 |
| Bse1I | ACTGG | 4 cut(s) | 515, 676, 862, 1171 |
| Bse21I | CCTNAGG | 1 cut(s) | 1586 |
| BseAI | TCCGGA | 1 cut(s) | 1777 |
| BseGI | GGATG | 5 cut(s) | 166, 198, 277, 1159, 1843 |
| BseMII | CTCAG | 4 cut(s) | 129, 1306, 1577, 1833 |
| BseNI | ACTGG | 4 cut(s) | 515, 676, 862, 1171 |
| BseRI | GAGGAG | 5 cut(s) | 614, 617, 1088, 1313, 1453 |
| BseSI | GKGCMC | 1 cut(s) | 1687 |
| BseX3I | CGGCCG | 2 cut(s) | 306, 1611 |
| BseYI | CCCAGC | 6 cut(s) | 107, 938, 1235, 1679, 1801, 1860 |
| BsgI | GTGCAG | 2 cut(s) | 1061, 1544 |
| Bsh1236I | CGCG | 8 cut(s) | 595, 597, 612, 744, 1064, 1449, 1610, 1897 |
| Bsh1285I | CGRYCG | 2 cut(s) | 309, 1614 |
| BshNI | GGYRCC | 6 cut(s) | 164, 352, 911, 1000, 1718, 1934 |
| BsiEI | CGRYCG | 2 cut(s) | 309, 1614 |
| BsiHKAI | GWGCWC | 2 cut(s) | 29, 1293 |
| BsiHKCI | CYCGRG | 3 cut(s) | 842, 1103, 1962 |
| BsiSI | CCGG | 8 cut(s) | 232, 239, 619, 1046, 1082, 1117, 1760, 1778 |
| BslFI | GGGAC | 5 cut(s) | 532, 588, 601, 1442, 1843 |
| BsmAI | GTCTC | 7 cut(s) | 788, 839, 1154, 1346, 1456, 1803, 1937 |
| BsmBI | CGTCTC | 3 cut(s) | 788, 1456, 1803 |
| BsmFI | GGGAC | 5 cut(s) | 532, 588, 601, 1442, 1843 |
| BsmI | GAATGC | 3 cut(s) | 139, 202, 1628 |
| Bso31I | GGTCTC | 2 cut(s) | 839, 1937 |
| BsoBI | CYCGRG | 3 cut(s) | 842, 1103, 1962 |
| Bsp119I | TTCGAA | 1 cut(s) | 753 |
| Bsp120I | GGGCCC | 1 cut(s) | 1683 |
| Bsp1286I | GDGCHC | 4 cut(s) | 29, 245, 1293, 1687 |
| Bsp13I | TCCGGA | 1 cut(s) | 1777 |
| Bsp143I | GATC | 4 cut(s) | 480, 621, 766, 1972 |
| BspCNI | CTCAG | 4 cut(s) | 130, 1305, 1578, 1832 |
| BspEI | TCCGGA | 1 cut(s) | 1777 |
| BspFNI | CGCG | 8 cut(s) | 595, 597, 612, 744, 1064, 1449, 1610, 1897 |
| BspMAI | CTGCAG | 1 cut(s) | 1485 |
| BspOI | GCTAGC | 1 cut(s) | 99 |
| BspPI | GGATC | 2 cut(s) | 629, 774 |
| BspT104I | TTCGAA | 1 cut(s) | 753 |
| BspT107I | GGYRCC | 6 cut(s) | 164, 352, 911, 1000, 1718, 1934 |
| BspTNI | GGTCTC | 2 cut(s) | 839, 1937 |
| BsrBI | CCGCTC | 4 cut(s) | 572, 1426, 1489, 1818 |
| BsrFI | RCCGGY | 4 cut(s) | 1045, 1081, 1116, 1759 |
| BsrI | ACTGG | 4 cut(s) | 515, 676, 862, 1171 |
| BssAI | RCCGGY | 4 cut(s) | 1045, 1081, 1116, 1759 |
| BssMI | GATC | 4 cut(s) | 480, 621, 766, 1972 |
| BssNI | GRCGYC | 2 cut(s) | 1719, 1812 |
| BssT1I | CCWWGG | 2 cut(s) | 331, 1067 |
| Bst4CI | ACNGT | 4 cut(s) | 268, 382, 979, 1165 |
| Bst6I | CTCTTC | 2 cut(s) | 108, 1137 |
| BstACI | GRCGYC | 2 cut(s) | 1719, 1812 |
| BstBAI | YACGTR | 1 cut(s) | 418 |
| BstBI | TTCGAA | 1 cut(s) | 753 |
| BstDEI | CTNAG | 6 cut(s) | 138, 491, 1292, 1371, 1586, 1819 |
| BstDSI | CCRYGG | 2 cut(s) | 1399, 1608 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 951, 1481 |
| BstF5I | GGATG | 5 cut(s) | 166, 198, 277, 1159, 1843 |
| BstFNI | CGCG | 8 cut(s) | 595, 597, 612, 744, 1064, 1449, 1610, 1897 |
| BstH2I | RGCGCY | 6 cut(s) | 93, 473, 1103, 1117, 1722, 1773 |
| BstKTI | GATC | 4 cut(s) | 483, 624, 769, 1975 |
| BstMAI | GTCTC | 7 cut(s) | 788, 839, 1154, 1346, 1456, 1803, 1937 |
| BstMBI | GATC | 4 cut(s) | 480, 621, 766, 1972 |
| BstMCI | CGRYCG | 2 cut(s) | 309, 1614 |
| BstNSI | RCATGY | 2 cut(s) | 1252, 1705 |
| BstSFI | CTRYAG | 1 cut(s) | 1481 |
| BstSLI | GKGCMC | 1 cut(s) | 1687 |
| BstUI | CGCG | 8 cut(s) | 595, 597, 612, 744, 1064, 1449, 1610, 1897 |
| BstV2I | GAAGAC | 2 cut(s) | 230, 833 |
| BstZI | CGGCCG | 2 cut(s) | 306, 1611 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1586 |
| BsuI | GTATCC | 1 cut(s) | 1594 |
| BtgI | CCRYGG | 2 cut(s) | 1399, 1608 |
| BtgZI | GCGATG | 3 cut(s) | 776, 1456, 1673 |
| BtrI | CACGTC | 1 cut(s) | 17 |
| BtsCI | GGATG | 5 cut(s) | 166, 198, 277, 1159, 1843 |
| BtsI | GCAGTG | 1 cut(s) | 1831 |
| BtsIMutI | CAGTG | 2 cut(s) | 984, 1831 |
| CaiI | CAGNNNCTG | 2 cut(s) | 983, 1276 |
| CciNI | GCGGCCGC | 1 cut(s) | 1611 |
| Cfr10I | RCCGGY | 4 cut(s) | 1045, 1081, 1116, 1759 |
| Cfr42I | CCGCGG | 1 cut(s) | 1611 |
| CseI | GACGC | 5 cut(s) | 517, 755, 1438, 1728, 1820 |
| Csp6I | GTAC | 3 cut(s) | 583, 802, 1001 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 997, 1032 |
| CviAII | CATG | 4 cut(s) | 314, 1244, 1249, 1702 |
| CviQI | GTAC | 3 cut(s) | 583, 802, 1001 |
| DdeI | CTNAG | 6 cut(s) | 138, 491, 1292, 1371, 1586, 1819 |
| DinI | GGCGCC | 1 cut(s) | 1720 |
| DpnI | GATC | 4 cut(s) | 482, 623, 768, 1974 |
| DpnII | GATC | 4 cut(s) | 480, 621, 766, 1972 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1855 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1950 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1855 |
| EaeI | YGGCCR | 5 cut(s) | 306, 1168, 1416, 1611, 1761 |
| EagI | CGGCCG | 2 cut(s) | 306, 1611 |
| Eam1104I | CTCTTC | 2 cut(s) | 108, 1137 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1950 |
| EarI | CTCTTC | 2 cut(s) | 108, 1137 |
| Ecl136II | GAGCTC | 2 cut(s) | 27, 1291 |
| EclXI | CGGCCG | 2 cut(s) | 306, 1611 |
| Eco130I | CCWWGG | 2 cut(s) | 331, 1067 |
| Eco147I | AGGCCT | 1 cut(s) | 921 |
| Eco24I | GRGCYC | 4 cut(s) | 29, 245, 1293, 1687 |
| Eco31I | GGTCTC | 2 cut(s) | 839, 1937 |
| Eco47I | GGWCC | 4 cut(s) | 11, 519, 1857, 1968 |
| Eco47III | AGCGCT | 1 cut(s) | 91 |
| Eco52I | CGGCCG | 2 cut(s) | 306, 1611 |
| Eco53kI | GAGCTC | 2 cut(s) | 27, 1291 |
| Eco57I | CTGAAG | 3 cut(s) | 1577, 1614, 1727 |
| Eco81I | CCTNAGG | 1 cut(s) | 1586 |
| Eco88I | CYCGRG | 3 cut(s) | 842, 1103, 1962 |
| EcoICRI | GAGCTC | 2 cut(s) | 27, 1291 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 951, 1481 |
| EcoO109I | RGGNCCY | 6 cut(s) | 374, 519, 1211, 1683, 1684, 1857 |
| EcoT14I | CCWWGG | 2 cut(s) | 331, 1067 |
| EcoT38I | GRGCYC | 4 cut(s) | 29, 245, 1293, 1687 |
| EgeI | GGCGCC | 1 cut(s) | 1720 |
| EheI | GGCGCC | 1 cut(s) | 1720 |
| ErhI | CCWWGG | 2 cut(s) | 331, 1067 |
| Esp3I | CGTCTC | 3 cut(s) | 788, 1456, 1803 |
| FaeI | CATG | 4 cut(s) | 317, 1247, 1252, 1705 |
| FaiI | YATR | 9 cut(s) | 315, 405, 1245, 1250, 1517, 1650, 1697, 1703, 1940 |
| FaqI | GGGAC | 5 cut(s) | 532, 588, 601, 1442, 1843 |
| FatI | CATG | 4 cut(s) | 313, 1243, 1248, 1701 |
| FblI | GTMKAC | 1 cut(s) | 414 |
| FokI | GGATG | 5 cut(s) | 173, 205, 284, 1166, 1830 |
| FriOI | GRGCYC | 4 cut(s) | 29, 245, 1293, 1687 |
| FspBI | CTAG | 5 cut(s) | 30, 60, 96, 1542, 1688 |
| GsaI | CCCAGC | 6 cut(s) | 111, 942, 1239, 1683, 1805, 1864 |
| GsuI | CTGGAG | 3 cut(s) | 140, 812, 1298 |
| HaeII | RGCGCY | 6 cut(s) | 93, 473, 1103, 1117, 1722, 1773 |
| HapII | CCGG | 8 cut(s) | 232, 239, 619, 1046, 1082, 1117, 1760, 1778 |
| HgaI | GACGC | 5 cut(s) | 517, 755, 1438, 1728, 1820 |
| Hin1I | GRCGYC | 2 cut(s) | 1719, 1812 |
| Hin1II | CATG | 4 cut(s) | 317, 1247, 1252, 1705 |
| HincII | GTYRAC | 1 cut(s) | 175 |
| HindII | GTYRAC | 1 cut(s) | 175 |
| HpaII | CCGG | 8 cut(s) | 232, 239, 619, 1046, 1082, 1117, 1760, 1778 |
| HphI | GGTGA | 5 cut(s) | 50, 259, 847, 1051, 1558 |
| Hpy166II | GTNNAC | 7 cut(s) | 14, 175, 415, 448, 838, 1202, 1445 |
| Hpy188III | TCNNGA | 5 cut(s) | 20, 484, 1105, 1315, 1778 |
| Hpy8I | GTNNAC | 7 cut(s) | 14, 175, 415, 448, 838, 1202, 1445 |
| Hpy99I | CGWCG | 7 cut(s) | 71, 268, 533, 749, 1139, 1852, 1888 |
| HpyCH4III | ACNGT | 4 cut(s) | 268, 382, 979, 1165 |
| HpyCH4IV | ACGT | 4 cut(s) | 16, 227, 417, 1413 |
| HpyCH4V | TGCA | 6 cut(s) | 313, 435, 1042, 1243, 1483, 1525 |
| HpyF3I | CTNAG | 6 cut(s) | 138, 491, 1292, 1371, 1586, 1819 |
| HpySE526I | ACGT | 4 cut(s) | 16, 227, 417, 1413 |
| Hsp92I | GRCGYC | 2 cut(s) | 1719, 1812 |
| Hsp92II | CATG | 4 cut(s) | 317, 1247, 1252, 1705 |
| KasI | GGCGCC | 1 cut(s) | 1718 |
| KflI | GGGWCCC | 1 cut(s) | 1857 |
| Kpn2I | TCCGGA | 1 cut(s) | 1777 |
| KpnI | GGTACC | 1 cut(s) | 1004 |
| KroI | GCCGGC | 4 cut(s) | 1045, 1081, 1116, 1759 |
| KroNI | GCCGGC | 4 cut(s) | 1047, 1083, 1118, 1761 |
| KspI | CCGCGG | 1 cut(s) | 1611 |
| Kzo9I | GATC | 4 cut(s) | 480, 621, 766, 1972 |
| LmnI | GCTCC | 8 cut(s) | 467, 713, 1075, 1288, 1321, 1462, 1486, 1552 |
| LweI | GCATC | 2 cut(s) | 1384, 1741 |
| MaeI | CTAG | 5 cut(s) | 30, 60, 96, 1542, 1688 |
| MaeII | ACGT | 4 cut(s) | 16, 227, 417, 1413 |
| MaeIII | GTNAC | 6 cut(s) | 208, 337, 1057, 1382, 1546, 1740 |
| MalI | GATC | 4 cut(s) | 482, 623, 768, 1974 |
| MbiI | CCGCTC | 4 cut(s) | 572, 1426, 1489, 1818 |
| MboI | GATC | 4 cut(s) | 480, 621, 766, 1972 |
| MboII | GAAGA | 6 cut(s) | 125, 232, 235, 838, 1154, 1276 |
| MhlI | GDGCHC | 4 cut(s) | 29, 245, 1293, 1687 |
| MlsI | TGGCCA | 2 cut(s) | 1170, 1418 |
| MluI | ACGCGT | 1 cut(s) | 1447 |
| MluNI | TGGCCA | 2 cut(s) | 1170, 1418 |
| Mly113I | GGCGCC | 1 cut(s) | 1719 |
| MlyI | GAGTC | 5 cut(s) | 149, 1121, 1541, 1676, 1861 |
| MmeI | TCCRAC | 6 cut(s) | 531, 583, 846, 1440, 1866, 1871 |
| Mox20I | TGGCCA | 2 cut(s) | 1170, 1418 |
| MreI | CGCCGGCG | 1 cut(s) | 1081 |
| MroI | TCCGGA | 1 cut(s) | 1777 |
| MroNI | GCCGGC | 4 cut(s) | 1045, 1081, 1116, 1759 |
| MroXI | GAANNNNTTC | 2 cut(s) | 227, 393 |
| MscI | TGGCCA | 2 cut(s) | 1170, 1418 |
| MseI | TTAA | 2 cut(s) | 546, 1175 |
| MslI | CAYNNNNRTG | 5 cut(s) | 215, 402, 909, 1520, 1700 |
| Msp20I | TGGCCA | 2 cut(s) | 1170, 1418 |
| MspA1I | CMGCKG | 7 cut(s) | 47, 349, 1235, 1528, 1610, 1619, 1805 |
| MspI | CCGG | 8 cut(s) | 232, 239, 619, 1046, 1082, 1117, 1760, 1778 |
| Mva1269I | GAATGC | 3 cut(s) | 139, 202, 1628 |
| MvnI | CGCG | 8 cut(s) | 595, 597, 612, 744, 1064, 1449, 1610, 1897 |
| NaeI | GCCGGC | 4 cut(s) | 1047, 1083, 1118, 1761 |
| NarI | GGCGCC | 1 cut(s) | 1719 |
| NciI | CCSGG | 2 cut(s) | 240, 619 |
| NdeII | GATC | 4 cut(s) | 480, 621, 766, 1972 |
| NgoMIV | GCCGGC | 4 cut(s) | 1045, 1081, 1116, 1759 |
| NheI | GCTAGC | 1 cut(s) | 95 |
| NlaIII | CATG | 4 cut(s) | 317, 1247, 1252, 1705 |
| NmeAIII | GCCGAG | 1 cut(s) | 832 |
| NmuCI | GTSAC | 6 cut(s) | 208, 337, 1057, 1382, 1546, 1740 |
| NotI | GCGGCCGC | 1 cut(s) | 1611 |
| NspI | RCATGY | 2 cut(s) | 1252, 1705 |
| NspV | TTCGAA | 1 cut(s) | 753 |
| PaeR7I | CTCGAG | 1 cut(s) | 1103 |
| PasI | CCCWGGG | 1 cut(s) | 293 |
| PceI | AGGCCT | 1 cut(s) | 921 |
| PciI | ACATGT | 1 cut(s) | 1248 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 13, 1419 |
| PctI | GAATGC | 3 cut(s) | 139, 202, 1628 |
| PdiI | GCCGGC | 4 cut(s) | 1047, 1083, 1118, 1761 |
| PdmI | GAANNNNTTC | 2 cut(s) | 227, 393 |
| PfeI | GAWTC | 5 cut(s) | 286, 487, 497, 1303, 1905 |
| PflFI | GACNNNGTC | 1 cut(s) | 1730 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 370 |
| PfoI | TCCNGGA | 3 cut(s) | 156, 617, 789 |
| PleI | GAGTC | 5 cut(s) | 148, 1121, 1540, 1675, 1861 |
| PluTI | GGCGCC | 1 cut(s) | 1722 |
| PpsI | GAGTC | 5 cut(s) | 148, 1121, 1540, 1675, 1861 |
| Ppu21I | YACGTR | 1 cut(s) | 418 |
| PpuMI | RGGWCCY | 2 cut(s) | 519, 1857 |
| PscI | ACATGT | 1 cut(s) | 1248 |
| Psp124BI | GAGCTC | 2 cut(s) | 29, 1293 |
| Psp5II | RGGWCCY | 2 cut(s) | 519, 1857 |
| PspFI | CCCAGC | 6 cut(s) | 107, 938, 1235, 1679, 1801, 1860 |
| PspOMI | GGGCCC | 1 cut(s) | 1683 |
| PspPPI | RGGWCCY | 2 cut(s) | 519, 1857 |
| PstI | CTGCAG | 1 cut(s) | 1485 |
| PstNI | CAGNNNCTG | 2 cut(s) | 983, 1276 |
| PsyI | GACNNNGTC | 1 cut(s) | 1730 |
| PvuII | CAGCTG | 1 cut(s) | 1235 |
| RsaI | GTAC | 3 cut(s) | 584, 803, 1002 |
| RsaNI | GTAC | 3 cut(s) | 583, 802, 1001 |
| RseI | CAYNNNNRTG | 5 cut(s) | 215, 402, 909, 1520, 1700 |
| SacI | GAGCTC | 2 cut(s) | 29, 1293 |
| SacII | CCGCGG | 1 cut(s) | 1611 |
| SaqAI | TTAA | 2 cut(s) | 546, 1175 |
| Sau3AI | GATC | 4 cut(s) | 480, 621, 766, 1972 |
| SchI | GAGTC | 5 cut(s) | 149, 1121, 1541, 1676, 1861 |
| SduI | GDGCHC | 4 cut(s) | 29, 245, 1293, 1687 |
| SfaNI | GCATC | 2 cut(s) | 1384, 1741 |
| SfcI | CTRYAG | 1 cut(s) | 1481 |
| SfoI | GGCGCC | 1 cut(s) | 1720 |
| Sfr274I | CTCGAG | 1 cut(s) | 1103 |
| Sfr303I | CCGCGG | 1 cut(s) | 1611 |
| SfuI | TTCGAA | 1 cut(s) | 753 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1081 |
| SgrBI | CCGCGG | 1 cut(s) | 1611 |
| SinI | GGWCC | 4 cut(s) | 11, 519, 1857, 1968 |
| SlaI | CTCGAG | 1 cut(s) | 1103 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 215, 402, 909, 1520, 1700 |
| SmlI | CTYRAG | 2 cut(s) | 451, 1103 |
| SmoI | CTYRAG | 2 cut(s) | 451, 1103 |
| SseBI | AGGCCT | 1 cut(s) | 921 |
| SspDI | GGCGCC | 1 cut(s) | 1718 |
| SspMI | CTAG | 5 cut(s) | 30, 60, 96, 1542, 1688 |
| SstI | GAGCTC | 2 cut(s) | 29, 1293 |
| StuI | AGGCCT | 1 cut(s) | 921 |
| StyI | CCWWGG | 2 cut(s) | 331, 1067 |
| TaaI | ACNGT | 4 cut(s) | 268, 382, 979, 1165 |
| TaiI | ACGT | 4 cut(s) | 19, 230, 420, 1416 |
| TfiI | GAWTC | 5 cut(s) | 286, 487, 497, 1303, 1905 |
| Tru1I | TTAA | 2 cut(s) | 546, 1175 |
| Tru9I | TTAA | 2 cut(s) | 546, 1175 |
| TscAI | CASTG | 2 cut(s) | 984, 1831 |
| TseFI | GTSAC | 6 cut(s) | 208, 337, 1057, 1382, 1546, 1740 |
| Tsp45I | GTSAC | 6 cut(s) | 208, 337, 1057, 1382, 1546, 1740 |
| TspDTI | ATGAA | 3 cut(s) | 209, 233, 1676 |
| TspGWI | ACGGA | 3 cut(s) | 700, 1565, 1865 |
| TspRI | CASTG | 2 cut(s) | 984, 1831 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1730 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 370 |
| VpaK11BI | GGWCC | 4 cut(s) | 11, 519, 1857, 1968 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 951, 1481 |
| XceI | RCATGY | 2 cut(s) | 1252, 1705 |
| XhoI | CTCGAG | 1 cut(s) | 1103 |
| XmiI | GTMKAC | 1 cut(s) | 414 |
| XmnI | GAANNNNTTC | 2 cut(s) | 227, 393 |
| XspI | CTAG | 5 cut(s) | 30, 60, 96, 1542, 1688 |