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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 529 |
| AccB1I | GGYRCC | 5 cut(s) | 352, 1105, 1123, 1602, 1880 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 337, 417 |
| AccBSI | CCGCTC | 5 cut(s) | 1438, 1465, 1600, 1666, 1678 |
| AccII | CGCG | 4 cut(s) | 16, 753, 1385, 1409 |
| AclWI | GGATC | 1 cut(s) | 1222 |
| AcoI | YGGCCR | 3 cut(s) | 1692, 1734, 1809 |
| AcsI | RAATTY | 1 cut(s) | 366 |
| AcuI | CTGAAG | 3 cut(s) | 129, 239, 1538 |
| AcvI | CACGTG | 1 cut(s) | 1640 |
| AcyI | GRCGYC | 4 cut(s) | 888, 1124, 1379, 1603 |
| AfaI | GTAC | 6 cut(s) | 494, 944, 1037, 1146, 1412, 1497 |
| AflIII | ACRYGT | 1 cut(s) | 414 |
| AgsI | TTSAA | 4 cut(s) | 365, 857, 1528, 1831 |
| AhlI | ACTAGT | 1 cut(s) | 505 |
| AjiI | CACGTC | 2 cut(s) | 1300, 1366 |
| AjnI | CCWGG | 9 cut(s) | 156, 238, 330, 558, 981, 1482, 1575, 1671, 1782 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1673, 1705 |
| AleI | CACNNNNGTG | 1 cut(s) | 1244 |
| AluBI | AGCT | 7 cut(s) | 253, 566, 574, 723, 816, 1094, 1699 |
| AluI | AGCT | 7 cut(s) | 253, 566, 574, 723, 816, 1094, 1699 |
| Alw21I | GWGCWC | 2 cut(s) | 315, 568 |
| Alw26I | GTCTC | 4 cut(s) | 809, 929, 1370, 1383 |
| Alw44I | GTGCAC | 1 cut(s) | 311 |
| AlwI | GGATC | 1 cut(s) | 1222 |
| Ama87I | CYCGRG | 1 cut(s) | 1469 |
| AoxI | GGCC | 9 cut(s) | 279, 339, 1176, 1220, 1480, 1650, 1692, 1734, 1809 |
| ApaLI | GTGCAC | 1 cut(s) | 311 |
| ApeKI | GCWGC | 6 cut(s) | 44, 50, 92, 1091, 1628, 1720 |
| ApoI | RAATTY | 1 cut(s) | 366 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1249, 1281 |
| AspLEI | GCGC | 7 cut(s) | 436, 997, 1126, 1167, 1605, 1858, 1919 |
| AspS9I | GGNCC | 6 cut(s) | 151, 470, 615, 657, 907, 1669 |
| AsuC2I | CCSGG | 2 cut(s) | 867, 952 |
| AsuHPI | GGTGA | 5 cut(s) | 259, 1067, 1445, 1772, 1781 |
| AsuNHI | GCTAGC | 1 cut(s) | 955 |
| AvaI | CYCGRG | 1 cut(s) | 1469 |
| AvaII | GGWCC | 6 cut(s) | 151, 470, 615, 657, 907, 1669 |
| BaeGI | GKGCMC | 2 cut(s) | 315, 1885 |
| BalI | TGGCCA | 1 cut(s) | 1694 |
| BanI | GGYRCC | 5 cut(s) | 352, 1105, 1123, 1602, 1880 |
| BanII | GRGCYC | 1 cut(s) | 568 |
| BauI | CACGAG | 2 cut(s) | 314, 846 |
| BbrPI | CACGTG | 1 cut(s) | 1640 |
| BbsI | GAAGAC | 1 cut(s) | 1544 |
| Bbv12I | GWGCWC | 2 cut(s) | 315, 568 |
| BbvCI | CCTCAGC | 1 cut(s) | 1791 |
| BbvI | GCAGC | 6 cut(s) | 31, 37, 79, 1103, 1640, 1707 |
| BccI | CCATC | 2 cut(s) | 964, 1053 |
| BceAI | ACGGC | 7 cut(s) | 867, 1018, 1055, 1248, 1493, 1548, 1785 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1169, 1203 |
| BciT130I | CCWGG | 9 cut(s) | 158, 240, 332, 560, 983, 1484, 1577, 1673, 1784 |
| BclI | TGATCA | 1 cut(s) | 1513 |
| BcnI | CCSGG | 2 cut(s) | 867, 952 |
| BcoDI | GTCTC | 4 cut(s) | 809, 929, 1370, 1383 |
| BcuI | ACTAGT | 1 cut(s) | 505 |
| BfaI | CTAG | 9 cut(s) | 20, 30, 506, 710, 813, 956, 1095, 1394, 1927 |
| BfoI | RGCGCY | 5 cut(s) | 437, 998, 1127, 1606, 1859 |
| BfuAI | ACCTGC | 1 cut(s) | 529 |
| BlpI | GCTNAGC | 2 cut(s) | 963, 998 |
| Bme18I | GGWCC | 6 cut(s) | 151, 470, 615, 657, 907, 1669 |
| BmeT110I | CYCGRG | 1 cut(s) | 1469 |
| BmgBI | CACGTC | 2 cut(s) | 1300, 1366 |
| BmgT120I | GGNCC | 6 cut(s) | 151, 470, 615, 657, 907, 1669 |
| BmsI | GCATC | 5 cut(s) | 124, 417, 1615, 1624, 1890 |
| BmtI | GCTAGC | 1 cut(s) | 959 |
| BpiI | GAAGAC | 1 cut(s) | 1544 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 266, 298, 1210, 1242 |
| BpmI | CTGGAG | 4 cut(s) | 140, 1505, 1694, 1721 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1791 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 963, 998 |
| BpuEI | CTTGAG | 1 cut(s) | 568 |
| BpuMI | CCSGG | 2 cut(s) | 867, 952 |
| BsaAI | YACGTR | 1 cut(s) | 1640 |
| BsaHI | GRCGYC | 4 cut(s) | 888, 1124, 1379, 1603 |
| BsaI | GGTCTC | 2 cut(s) | 929, 1383 |
| BsaJI | CCNNGG | 9 cut(s) | 331, 523, 559, 903, 1008, 1350, 1575, 1740, 1783 |
| BsaWI | WCCGGW | 1 cut(s) | 231 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 476, 506, 926, 956, 1382, 1412 |
| Bse118I | RCCGGY | 2 cut(s) | 213, 774 |
| Bse1I | ACTGG | 4 cut(s) | 96, 354, 611, 1090 |
| Bse3DI | GCAATG | 2 cut(s) | 387, 1185 |
| BseBI | CCWGG | 9 cut(s) | 158, 240, 332, 560, 983, 1484, 1577, 1673, 1784 |
| BseDI | CCNNGG | 9 cut(s) | 331, 523, 559, 903, 1008, 1350, 1575, 1740, 1783 |
| BseGI | GGATG | 6 cut(s) | 139, 166, 231, 1300, 1543, 1597 |
| BseMI | GCAATG | 2 cut(s) | 387, 1185 |
| BseMII | CTCAG | 5 cut(s) | 129, 578, 906, 977, 1782 |
| BseNI | ACTGG | 4 cut(s) | 96, 354, 611, 1090 |
| BseSI | GKGCMC | 2 cut(s) | 315, 1885 |
| BseX3I | CGGCCG | 1 cut(s) | 1809 |
| BseXI | GCAGC | 6 cut(s) | 31, 37, 79, 1103, 1640, 1707 |
| BseYI | CCCAGC | 3 cut(s) | 816, 1134, 1168 |
| BsgI | GTGCAG | 1 cut(s) | 1110 |
| Bsh1236I | CGCG | 4 cut(s) | 16, 753, 1385, 1409 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1506, 1812 |
| BshFI | GGCC | 9 cut(s) | 281, 341, 1178, 1222, 1482, 1652, 1694, 1736, 1811 |
| BshNI | GGYRCC | 5 cut(s) | 352, 1105, 1123, 1602, 1880 |
| BsiEI | CGRYCG | 2 cut(s) | 1506, 1812 |
| BsiHKAI | GWGCWC | 2 cut(s) | 315, 568 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1469 |
| BsiSI | CCGG | 5 cut(s) | 214, 232, 775, 866, 951 |
| BslFI | GGGAC | 5 cut(s) | 483, 628, 1096, 1682, 1699 |
| BsmAI | GTCTC | 4 cut(s) | 809, 929, 1370, 1383 |
| BsmBI | CGTCTC | 2 cut(s) | 809, 1370 |
| BsmFI | GGGAC | 5 cut(s) | 483, 628, 1096, 1682, 1699 |
| BsnI | GGCC | 9 cut(s) | 281, 341, 1178, 1222, 1482, 1652, 1694, 1736, 1811 |
| Bso31I | GGTCTC | 2 cut(s) | 929, 1383 |
| BsoBI | CYCGRG | 1 cut(s) | 1469 |
| Bsp1286I | GDGCHC | 3 cut(s) | 315, 568, 1885 |
| Bsp143I | GATC | 6 cut(s) | 576, 832, 918, 1214, 1513, 1726 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 963, 998 |
| Bsp19I | CCATGG | 1 cut(s) | 903 |
| BspANI | GGCC | 9 cut(s) | 281, 341, 1178, 1222, 1482, 1652, 1694, 1736, 1811 |
| BspCNI | CTCAG | 5 cut(s) | 130, 579, 907, 976, 1783 |
| BspFNI | CGCG | 4 cut(s) | 16, 753, 1385, 1409 |
| BspMI | ACCTGC | 1 cut(s) | 529 |
| BspOI | GCTAGC | 1 cut(s) | 959 |
| BspPI | GGATC | 1 cut(s) | 1222 |
| BspT107I | GGYRCC | 5 cut(s) | 352, 1105, 1123, 1602, 1880 |
| BspTNI | GGTCTC | 2 cut(s) | 929, 1383 |
| BsrBI | CCGCTC | 5 cut(s) | 1438, 1465, 1600, 1666, 1678 |
| BsrDI | GCAATG | 2 cut(s) | 387, 1185 |
| BsrFI | RCCGGY | 2 cut(s) | 213, 774 |
| BsrI | ACTGG | 4 cut(s) | 96, 354, 611, 1090 |
| BssAI | RCCGGY | 2 cut(s) | 213, 774 |
| BssECI | CCNNGG | 9 cut(s) | 331, 523, 559, 903, 1008, 1350, 1575, 1740, 1783 |
| BssMI | GATC | 6 cut(s) | 576, 832, 918, 1214, 1513, 1726 |
| BssNI | GRCGYC | 4 cut(s) | 888, 1124, 1379, 1603 |
| BssSI | CACGAG | 2 cut(s) | 314, 846 |
| BssT1I | CCWWGG | 4 cut(s) | 523, 903, 1350, 1740 |
| Bst2BI | CACGAG | 2 cut(s) | 314, 846 |
| Bst2UI | CCWGG | 9 cut(s) | 158, 240, 332, 560, 983, 1484, 1577, 1673, 1784 |
| Bst4CI | ACNGT | 8 cut(s) | 268, 310, 478, 1162, 1312, 1433, 1622, 1761 |
| Bst6I | CTCTTC | 2 cut(s) | 738, 1284 |
| BstACI | GRCGYC | 4 cut(s) | 888, 1124, 1379, 1603 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1634 |
| BstBAI | YACGTR | 1 cut(s) | 1640 |
| BstDEI | CTNAG | 7 cut(s) | 138, 587, 915, 963, 998, 1791, 1863 |
| BstDSI | CCRYGG | 1 cut(s) | 903 |
| BstEII | GGTNACC | 1 cut(s) | 1055 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1610 |
| BstF5I | GGATG | 6 cut(s) | 139, 166, 231, 1300, 1543, 1597 |
| BstFNI | CGCG | 4 cut(s) | 16, 753, 1385, 1409 |
| BstH2I | RGCGCY | 5 cut(s) | 437, 998, 1127, 1606, 1859 |
| BstHHI | GCGC | 7 cut(s) | 436, 997, 1126, 1167, 1605, 1858, 1919 |
| BstKTI | GATC | 6 cut(s) | 579, 835, 921, 1217, 1516, 1729 |
| BstMAI | GTCTC | 4 cut(s) | 809, 929, 1370, 1383 |
| BstMBI | GATC | 6 cut(s) | 576, 832, 918, 1214, 1513, 1726 |
| BstMCI | CGRYCG | 2 cut(s) | 1506, 1812 |
| BstNI | CCWGG | 9 cut(s) | 158, 240, 332, 560, 983, 1484, 1577, 1673, 1784 |
| BstNSI | RCATGY | 1 cut(s) | 418 |
| BstPI | GGTNACC | 1 cut(s) | 1055 |
| BstSLI | GKGCMC | 2 cut(s) | 315, 1885 |
| BstUI | CGCG | 4 cut(s) | 16, 753, 1385, 1409 |
| BstV1I | GCAGC | 6 cut(s) | 31, 37, 79, 1103, 1640, 1707 |
| BstV2I | GAAGAC | 1 cut(s) | 1544 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 904, 1052 |
| BstZI | CGGCCG | 1 cut(s) | 1809 |
| BsuRI | GGCC | 9 cut(s) | 281, 341, 1178, 1222, 1482, 1652, 1694, 1736, 1811 |
| BtgI | CCRYGG | 1 cut(s) | 903 |
| BtrI | CACGTC | 2 cut(s) | 1300, 1366 |
| BtsCI | GGATG | 6 cut(s) | 139, 166, 231, 1300, 1543, 1597 |
| BtsIMutI | CAGTG | 2 cut(s) | 103, 1167 |
| BveI | ACCTGC | 1 cut(s) | 529 |
| CciNI | GCGGCCGC | 1 cut(s) | 1809 |
| CfoI | GCGC | 7 cut(s) | 436, 997, 1126, 1167, 1605, 1858, 1919 |
| Cfr10I | RCCGGY | 2 cut(s) | 213, 774 |
| Cfr13I | GGNCC | 6 cut(s) | 151, 470, 615, 657, 907, 1669 |
| CseI | GACGC | 3 cut(s) | 5, 896, 1387 |
| Csp6I | GTAC | 6 cut(s) | 493, 943, 1036, 1145, 1411, 1496 |
| CviAII | CATG | 6 cut(s) | 415, 598, 904, 911, 940, 1030 |
| CviQI | GTAC | 6 cut(s) | 493, 943, 1036, 1145, 1411, 1496 |
| DdeI | CTNAG | 7 cut(s) | 138, 587, 915, 963, 998, 1791, 1863 |
| DinI | GGCGCC | 2 cut(s) | 1125, 1604 |
| DpnI | GATC | 6 cut(s) | 578, 834, 920, 1216, 1515, 1728 |
| DpnII | GATC | 6 cut(s) | 576, 832, 918, 1214, 1513, 1726 |
| EaeI | YGGCCR | 3 cut(s) | 1692, 1734, 1809 |
| EagI | CGGCCG | 1 cut(s) | 1809 |
| Eam1104I | CTCTTC | 2 cut(s) | 738, 1284 |
| EarI | CTCTTC | 2 cut(s) | 738, 1284 |
| EciI | GGCGGA | 8 cut(s) | 249, 317, 497, 793, 852, 1550, 1604, 1856 |
| Ecl136II | GAGCTC | 1 cut(s) | 566 |
| EclXI | CGGCCG | 1 cut(s) | 1809 |
| Eco130I | CCWWGG | 4 cut(s) | 523, 903, 1350, 1740 |
| Eco147I | AGGCCT | 2 cut(s) | 281, 1222 |
| Eco24I | GRGCYC | 1 cut(s) | 568 |
| Eco31I | GGTCTC | 2 cut(s) | 929, 1383 |
| Eco47I | GGWCC | 6 cut(s) | 151, 470, 615, 657, 907, 1669 |
| Eco52I | CGGCCG | 1 cut(s) | 1809 |
| Eco53kI | GAGCTC | 1 cut(s) | 566 |
| Eco57I | CTGAAG | 3 cut(s) | 129, 239, 1538 |
| Eco72I | CACGTG | 1 cut(s) | 1640 |
| Eco88I | CYCGRG | 1 cut(s) | 1469 |
| Eco91I | GGTNACC | 1 cut(s) | 1055 |
| EcoICRI | GAGCTC | 1 cut(s) | 566 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1610 |
| EcoO109I | RGGNCCY | 3 cut(s) | 151, 615, 1669 |
| EcoO65I | GGTNACC | 1 cut(s) | 1055 |
| EcoRII | CCWGG | 9 cut(s) | 156, 238, 330, 558, 981, 1482, 1575, 1671, 1782 |
| EcoT14I | CCWWGG | 4 cut(s) | 523, 903, 1350, 1740 |
| EcoT38I | GRGCYC | 1 cut(s) | 568 |
| EgeI | GGCGCC | 2 cut(s) | 1125, 1604 |
| EheI | GGCGCC | 2 cut(s) | 1125, 1604 |
| ErhI | CCWWGG | 4 cut(s) | 523, 903, 1350, 1740 |
| Esp3I | CGTCTC | 2 cut(s) | 809, 1370 |
| FaeI | CATG | 6 cut(s) | 418, 601, 907, 914, 943, 1033 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1637, 1669 |
| FaqI | GGGAC | 5 cut(s) | 483, 628, 1096, 1682, 1699 |
| FatI | CATG | 6 cut(s) | 414, 597, 903, 910, 939, 1029 |
| FbaI | TGATCA | 1 cut(s) | 1513 |
| FokI | GGATG | 6 cut(s) | 146, 173, 238, 1307, 1550, 1604 |
| FriOI | GRGCYC | 1 cut(s) | 568 |
| FspBI | CTAG | 9 cut(s) | 20, 30, 506, 710, 813, 956, 1095, 1394, 1927 |
| GlaI | GCGC | 7 cut(s) | 435, 996, 1125, 1166, 1604, 1857, 1918 |
| GsaI | CCCAGC | 3 cut(s) | 820, 1138, 1172 |
| GsuI | CTGGAG | 4 cut(s) | 140, 1505, 1694, 1721 |
| HaeII | RGCGCY | 5 cut(s) | 437, 998, 1127, 1606, 1859 |
| HaeIII | GGCC | 9 cut(s) | 281, 341, 1178, 1222, 1482, 1652, 1694, 1736, 1811 |
| HapII | CCGG | 5 cut(s) | 214, 232, 775, 866, 951 |
| HgaI | GACGC | 3 cut(s) | 5, 896, 1387 |
| HhaI | GCGC | 7 cut(s) | 436, 997, 1126, 1167, 1605, 1858, 1919 |
| Hin1I | GRCGYC | 4 cut(s) | 888, 1124, 1379, 1603 |
| Hin1II | CATG | 6 cut(s) | 418, 601, 907, 914, 943, 1033 |
| Hin6I | GCGC | 7 cut(s) | 434, 995, 1124, 1165, 1603, 1856, 1917 |
| HinP1I | GCGC | 7 cut(s) | 434, 995, 1124, 1165, 1603, 1856, 1917 |
| HincII | GTYRAC | 1 cut(s) | 211 |
| HindII | GTYRAC | 1 cut(s) | 211 |
| HpaII | CCGG | 5 cut(s) | 214, 232, 775, 866, 951 |
| HphI | GGTGA | 5 cut(s) | 259, 1067, 1445, 1772, 1781 |
| Hpy166II | GTNNAC | 6 cut(s) | 211, 271, 313, 544, 979, 1147 |
| Hpy188I | TCNGA | 6 cut(s) | 694, 767, 1009, 1206, 1417, 1557 |
| Hpy188III | TCNNGA | 3 cut(s) | 20, 580, 737 |
| Hpy8I | GTNNAC | 6 cut(s) | 211, 271, 313, 544, 979, 1147 |
| Hpy99I | CGWCG | 2 cut(s) | 268, 833 |
| HpyCH4III | ACNGT | 8 cut(s) | 268, 310, 478, 1162, 1312, 1433, 1622, 1761 |
| HpyCH4IV | ACGT | 4 cut(s) | 256, 1299, 1365, 1639 |
| HpyCH4V | TGCA | 5 cut(s) | 313, 531, 1091, 1628, 1637 |
| HpyF3I | CTNAG | 7 cut(s) | 138, 587, 915, 963, 998, 1791, 1863 |
| HpySE526I | ACGT | 4 cut(s) | 256, 1299, 1365, 1639 |
| Hsp92I | GRCGYC | 4 cut(s) | 888, 1124, 1379, 1603 |
| Hsp92II | CATG | 6 cut(s) | 418, 601, 907, 914, 943, 1033 |
| HspAI | GCGC | 7 cut(s) | 434, 995, 1124, 1165, 1603, 1856, 1917 |
| KasI | GGCGCC | 2 cut(s) | 1123, 1602 |
| KroI | GCCGGC | 1 cut(s) | 774 |
| KroNI | GCCGGC | 1 cut(s) | 776 |
| Ksp22I | TGATCA | 1 cut(s) | 1513 |
| Kzo9I | GATC | 6 cut(s) | 576, 832, 918, 1214, 1513, 1726 |
| LmnI | GCTCC | 9 cut(s) | 563, 571, 670, 1198, 1231, 1597, 1675, 1702, 1797 |
| Lsp1109I | GCAGC | 6 cut(s) | 31, 37, 79, 1103, 1640, 1707 |
| LweI | GCATC | 5 cut(s) | 124, 417, 1615, 1624, 1890 |
| MaeI | CTAG | 9 cut(s) | 20, 30, 506, 710, 813, 956, 1095, 1394, 1927 |
| MaeII | ACGT | 4 cut(s) | 256, 1299, 1365, 1639 |
| MaeIII | GTNAC | 4 cut(s) | 869, 884, 1055, 1543 |
| MalI | GATC | 6 cut(s) | 578, 834, 920, 1216, 1515, 1728 |
| MbiI | CCGCTC | 5 cut(s) | 1438, 1465, 1600, 1666, 1678 |
| MboI | GATC | 6 cut(s) | 576, 832, 918, 1214, 1513, 1726 |
| MboII | GAAGA | 7 cut(s) | 281, 752, 755, 1298, 1301, 1339, 1544 |
| MfeI | CAATTG | 1 cut(s) | 1688 |
| MhlI | GDGCHC | 3 cut(s) | 315, 568, 1885 |
| MlsI | TGGCCA | 1 cut(s) | 1694 |
| MluCI | AATT | 2 cut(s) | 366, 1688 |
| MluNI | TGGCCA | 1 cut(s) | 1694 |
| Mly113I | GGCGCC | 2 cut(s) | 1124, 1603 |
| MlyI | GAGTC | 7 cut(s) | 149, 559, 727, 838, 1268, 1391, 1832 |
| MmeI | TCCRAC | 3 cut(s) | 672, 1176, 1743 |
| Mox20I | TGGCCA | 1 cut(s) | 1694 |
| MroNI | GCCGGC | 1 cut(s) | 774 |
| MscI | TGGCCA | 1 cut(s) | 1694 |
| MseI | TTAA | 3 cut(s) | 687, 1424, 1755 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1050, 1244 |
| Msp20I | TGGCCA | 1 cut(s) | 1694 |
| MspA1I | CMGCKG | 5 cut(s) | 50, 296, 1172, 1232, 1817 |
| MspI | CCGG | 5 cut(s) | 214, 232, 775, 866, 951 |
| MunI | CAATTG | 1 cut(s) | 1688 |
| MvaI | CCWGG | 9 cut(s) | 158, 240, 332, 560, 983, 1484, 1577, 1673, 1784 |
| MvnI | CGCG | 4 cut(s) | 16, 753, 1385, 1409 |
| NaeI | GCCGGC | 1 cut(s) | 776 |
| NarI | GGCGCC | 2 cut(s) | 1124, 1603 |
| NciI | CCSGG | 2 cut(s) | 867, 952 |
| NcoI | CCATGG | 1 cut(s) | 903 |
| NdeII | GATC | 6 cut(s) | 576, 832, 918, 1214, 1513, 1726 |
| NgoMIV | GCCGGC | 1 cut(s) | 774 |
| NheI | GCTAGC | 1 cut(s) | 955 |
| NlaIII | CATG | 6 cut(s) | 418, 601, 907, 914, 943, 1033 |
| NmuCI | GTSAC | 3 cut(s) | 884, 1055, 1543 |
| NotI | GCGGCCGC | 1 cut(s) | 1809 |
| NspI | RCATGY | 1 cut(s) | 418 |
| OliI | CACNNNNGTG | 1 cut(s) | 1244 |
| PceI | AGGCCT | 2 cut(s) | 281, 1222 |
| PciI | ACATGT | 1 cut(s) | 414 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 13 |
| PdiI | GCCGGC | 1 cut(s) | 776 |
| PfeI | GAWTC | 3 cut(s) | 286, 593, 781 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 337, 417 |
| PfoI | TCCNGGA | 1 cut(s) | 156 |
| PleI | GAGTC | 7 cut(s) | 148, 558, 727, 838, 1268, 1391, 1831 |
| PluTI | GGCGCC | 2 cut(s) | 1127, 1606 |
| PmaCI | CACGTG | 1 cut(s) | 1640 |
| PmlI | CACGTG | 1 cut(s) | 1640 |
| PpsI | GAGTC | 7 cut(s) | 148, 558, 727, 838, 1268, 1391, 1831 |
| Ppu21I | YACGTR | 1 cut(s) | 1640 |
| PpuMI | RGGWCCY | 3 cut(s) | 151, 615, 1669 |
| PscI | ACATGT | 1 cut(s) | 414 |
| Psp124BI | GAGCTC | 1 cut(s) | 568 |
| Psp5II | RGGWCCY | 3 cut(s) | 151, 615, 1669 |
| Psp6I | CCWGG | 9 cut(s) | 156, 238, 330, 558, 981, 1482, 1575, 1671, 1782 |
| PspCI | CACGTG | 1 cut(s) | 1640 |
| PspEI | GGTNACC | 1 cut(s) | 1055 |
| PspFI | CCCAGC | 3 cut(s) | 816, 1134, 1168 |
| PspGI | CCWGG | 9 cut(s) | 156, 238, 330, 558, 981, 1482, 1575, 1671, 1782 |
| PspPI | GGNCC | 6 cut(s) | 151, 470, 615, 657, 907, 1669 |
| PspPPI | RGGWCCY | 3 cut(s) | 151, 615, 1669 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1403, 1435 |
| RsaI | GTAC | 6 cut(s) | 494, 944, 1037, 1146, 1412, 1497 |
| RsaNI | GTAC | 6 cut(s) | 493, 943, 1036, 1145, 1411, 1496 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1050, 1244 |
| SacI | GAGCTC | 1 cut(s) | 568 |
| SaqAI | TTAA | 3 cut(s) | 687, 1424, 1755 |
| Sau3AI | GATC | 6 cut(s) | 576, 832, 918, 1214, 1513, 1726 |
| Sau96I | GGNCC | 6 cut(s) | 151, 470, 615, 657, 907, 1669 |
| SchI | GAGTC | 7 cut(s) | 149, 559, 727, 838, 1268, 1391, 1832 |
| SduI | GDGCHC | 3 cut(s) | 315, 568, 1885 |
| SfaNI | GCATC | 5 cut(s) | 124, 417, 1615, 1624, 1890 |
| SfoI | GGCGCC | 2 cut(s) | 1125, 1604 |
| SinI | GGWCC | 6 cut(s) | 151, 470, 615, 657, 907, 1669 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1050, 1244 |
| SmlI | CTYRAG | 1 cut(s) | 547 |
| SmoI | CTYRAG | 1 cut(s) | 547 |
| SpeI | ACTAGT | 1 cut(s) | 505 |
| Sse9I | AATT | 2 cut(s) | 366, 1688 |
| SseBI | AGGCCT | 2 cut(s) | 281, 1222 |
| SspDI | GGCGCC | 2 cut(s) | 1123, 1602 |
| SspMI | CTAG | 9 cut(s) | 20, 30, 506, 710, 813, 956, 1095, 1394, 1927 |
| SstI | GAGCTC | 1 cut(s) | 568 |
| StuI | AGGCCT | 2 cut(s) | 281, 1222 |
| StyI | CCWWGG | 4 cut(s) | 523, 903, 1350, 1740 |
| TaaI | ACNGT | 8 cut(s) | 268, 310, 478, 1162, 1312, 1433, 1622, 1761 |
| TaiI | ACGT | 4 cut(s) | 259, 1302, 1368, 1642 |
| TaqI | TCGA | 6 cut(s) | 284, 579, 831, 921, 1217, 1502 |
| TasI | AATT | 2 cut(s) | 366, 1688 |
| TatI | WGTACW | 1 cut(s) | 492 |
| TfiI | GAWTC | 3 cut(s) | 286, 593, 781 |
| Tru1I | TTAA | 3 cut(s) | 687, 1424, 1755 |
| Tru9I | TTAA | 3 cut(s) | 687, 1424, 1755 |
| TscAI | CASTG | 2 cut(s) | 103, 1167 |
| TseFI | GTSAC | 3 cut(s) | 884, 1055, 1543 |
| TseI | GCWGC | 6 cut(s) | 44, 50, 92, 1091, 1628, 1720 |
| Tsp45I | GTSAC | 3 cut(s) | 884, 1055, 1543 |
| TspGWI | ACGGA | 1 cut(s) | 133 |
| TspRI | CASTG | 2 cut(s) | 103, 1167 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 337, 417 |
| VneI | GTGCAC | 1 cut(s) | 311 |
| VpaK11BI | GGWCC | 6 cut(s) | 151, 470, 615, 657, 907, 1669 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1610 |
| XapI | RAATTY | 1 cut(s) | 366 |
| XbaI | TCTAGA | 1 cut(s) | 19 |
| XceI | RCATGY | 1 cut(s) | 418 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1046, 1192 |
| XspI | CTAG | 9 cut(s) | 20, 30, 506, 710, 813, 956, 1095, 1394, 1927 |