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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 884 |
| Acc36I | ACCTGC | 2 cut(s) | 636, 1533 |
| AccB1I | GGYRCC | 4 cut(s) | 15, 455, 508, 1541 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 343, 1551 |
| AccBSI | CCGCTC | 3 cut(s) | 551, 857, 1336 |
| AccI | GTMKAC | 3 cut(s) | 556, 669, 706 |
| AccII | CGCG | 5 cut(s) | 574, 576, 1067, 1122, 1639 |
| AclI | AACGTT | 1 cut(s) | 515 |
| AclWI | GGATC | 6 cut(s) | 334, 608, 974, 1076, 1411, 1731 |
| AcoI | YGGCCR | 2 cut(s) | 787, 1660 |
| AcsI | RAATTY | 1 cut(s) | 1094 |
| AcuI | CTGAAG | 6 cut(s) | 212, 422, 717, 890, 1400, 1406 |
| AcyI | GRCGYC | 4 cut(s) | 16, 456, 509, 881 |
| AdeI | CACNNNGTG | 1 cut(s) | 654 |
| AfaI | GTAC | 3 cut(s) | 139, 425, 485 |
| AflIII | ACRYGT | 2 cut(s) | 685, 1197 |
| AgsI | TTSAA | 2 cut(s) | 539, 1166 |
| AjiI | CACGTC | 1 cut(s) | 688 |
| AjnI | CCWGG | 8 cut(s) | 119, 211, 342, 458, 718, 843, 1483, 1737 |
| AleI | CACNNNNGTG | 2 cut(s) | 1110, 1691 |
| Alw26I | GTCTC | 2 cut(s) | 950, 1235 |
| AlwI | GGATC | 6 cut(s) | 334, 608, 974, 1076, 1411, 1731 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 343, 400 |
| Ama87I | CYCGRG | 1 cut(s) | 20 |
| AoxI | GGCC | 8 cut(s) | 161, 406, 728, 787, 846, 899, 1481, 1660 |
| ApaI | GGGCCC | 1 cut(s) | 903 |
| ApoI | RAATTY | 1 cut(s) | 1094 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 350, 382 |
| AspLEI | GCGC | 7 cut(s) | 18, 65, 458, 511, 576, 1122, 1639 |
| AspS9I | GGNCC | 8 cut(s) | 161, 406, 847, 899, 900, 1143, 1384, 1522 |
| AsuC2I | CCSGG | 3 cut(s) | 652, 743, 1480 |
| AsuHPI | GGTGA | 9 cut(s) | 113, 232, 304, 640, 760, 1018, 1408, 1678, 1705 |
| AsuNHI | GCTAGC | 3 cut(s) | 68, 95, 265 |
| AvaI | CYCGRG | 1 cut(s) | 20 |
| AvaII | GGWCC | 3 cut(s) | 1143, 1384, 1522 |
| BaeGI | GKGCMC | 4 cut(s) | 233, 903, 1197, 1544 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 129, 162 |
| BalI | TGGCCA | 2 cut(s) | 789, 1662 |
| BanI | GGYRCC | 4 cut(s) | 15, 455, 508, 1541 |
| BanII | GRGCYC | 2 cut(s) | 743, 903 |
| BauI | CACGAG | 3 cut(s) | 287, 974, 1308 |
| BbsI | GAAGAC | 2 cut(s) | 1268, 1605 |
| BbvCI | CCTCAGC | 1 cut(s) | 81 |
| BccI | CCATC | 4 cut(s) | 497, 968, 1133, 1609 |
| BceAI | ACGGC | 2 cut(s) | 266, 1159 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1754, 1788 |
| BciT130I | CCWGG | 8 cut(s) | 121, 213, 344, 460, 720, 845, 1485, 1739 |
| BcnI | CCSGG | 3 cut(s) | 652, 743, 1480 |
| BcoDI | GTCTC | 2 cut(s) | 950, 1235 |
| BfaI | CTAG | 7 cut(s) | 30, 54, 69, 96, 266, 632, 1629 |
| BfmI | CTRYAG | 2 cut(s) | 141, 1707 |
| BfoI | RGCGCY | 4 cut(s) | 19, 66, 459, 512 |
| BfuAI | ACCTGC | 2 cut(s) | 636, 1533 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 213 |
| BglII | AGATCT | 1 cut(s) | 634 |
| Bme18I | GGWCC | 3 cut(s) | 1143, 1384, 1522 |
| BmeT110I | CYCGRG | 1 cut(s) | 20 |
| BmgBI | CACGTC | 1 cut(s) | 688 |
| BmgT120I | GGNCC | 8 cut(s) | 161, 406, 847, 899, 900, 1143, 1384, 1522 |
| BmiI | GGNNCC | 9 cut(s) | 17, 457, 510, 842, 849, 901, 902, 1144, 1543 |
| BmrI | ACTGGG | 3 cut(s) | 1561, 1561, 1683 |
| BmsI | GCATC | 5 cut(s) | 454, 741, 1285, 1294, 1686 |
| BmtI | GCTAGC | 3 cut(s) | 72, 99, 269 |
| BmuI | ACTGGG | 3 cut(s) | 1561, 1561, 1683 |
| BoxI | GACNNNNGTC | 2 cut(s) | 173, 686 |
| BpiI | GAAGAC | 2 cut(s) | 1268, 1605 |
| BpmI | CTGGAG | 3 cut(s) | 320, 855, 1379 |
| Bpu10I | CCTNAGC | 1 cut(s) | 81 |
| BpuMI | CCSGG | 3 cut(s) | 652, 743, 1480 |
| BsaAI | YACGTR | 1 cut(s) | 131 |
| BsaHI | GRCGYC | 4 cut(s) | 16, 456, 509, 881 |
| BsaI | GGTCTC | 2 cut(s) | 950, 1235 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 32, 62, 866, 896 |
| Bse118I | RCCGGY | 1 cut(s) | 1756 |
| Bse1I | ACTGG | 5 cut(s) | 542, 1556, 1567, 1575, 1678 |
| BseBI | CCWGG | 8 cut(s) | 121, 213, 344, 460, 720, 845, 1485, 1739 |
| BseGI | GGATG | 6 cut(s) | 469, 934, 1144, 1309, 1474, 1687 |
| BseMII | CTCAG | 3 cut(s) | 72, 1077, 1217 |
| BseNI | ACTGG | 5 cut(s) | 542, 1556, 1567, 1575, 1678 |
| BseRI | GAGGAG | 1 cut(s) | 56 |
| BseSI | GKGCMC | 4 cut(s) | 233, 903, 1197, 1544 |
| BseYI | CCCAGC | 3 cut(s) | 1022, 1255, 1353 |
| Bsh1236I | CGCG | 5 cut(s) | 574, 576, 1067, 1122, 1639 |
| Bsh1285I | CGRYCG | 2 cut(s) | 177, 1345 |
| BshFI | GGCC | 8 cut(s) | 163, 408, 730, 789, 848, 901, 1483, 1662 |
| BshNI | GGYRCC | 4 cut(s) | 15, 455, 508, 1541 |
| BsiEI | CGRYCG | 2 cut(s) | 177, 1345 |
| BsiHKCI | CYCGRG | 1 cut(s) | 20 |
| BsiSI | CCGG | 4 cut(s) | 651, 743, 1480, 1757 |
| BslFI | GGGAC | 2 cut(s) | 1156, 1549 |
| BsmAI | GTCTC | 2 cut(s) | 950, 1235 |
| BsmFI | GGGAC | 2 cut(s) | 1156, 1549 |
| BsnI | GGCC | 8 cut(s) | 163, 408, 730, 789, 848, 901, 1483, 1662 |
| Bso31I | GGTCTC | 2 cut(s) | 950, 1235 |
| BsoBI | CYCGRG | 1 cut(s) | 20 |
| Bsp120I | GGGCCC | 1 cut(s) | 899 |
| Bsp1286I | GDGCHC | 5 cut(s) | 233, 743, 903, 1197, 1544 |
| Bsp143I | GATC | 8 cut(s) | 339, 600, 634, 697, 966, 1081, 1416, 1723 |
| Bsp19I | CCATGG | 2 cut(s) | 1689, 1714 |
| BspANI | GGCC | 8 cut(s) | 163, 408, 730, 789, 848, 901, 1483, 1662 |
| BspCNI | CTCAG | 3 cut(s) | 73, 1078, 1218 |
| BspFNI | CGCG | 5 cut(s) | 574, 576, 1067, 1122, 1639 |
| BspLI | GGNNCC | 9 cut(s) | 17, 457, 510, 842, 849, 901, 902, 1144, 1543 |
| BspMI | ACCTGC | 2 cut(s) | 636, 1533 |
| BspOI | GCTAGC | 3 cut(s) | 72, 99, 269 |
| BspPI | GGATC | 6 cut(s) | 334, 608, 974, 1076, 1411, 1731 |
| BspT107I | GGYRCC | 4 cut(s) | 15, 455, 508, 1541 |
| BspTNI | GGTCTC | 2 cut(s) | 950, 1235 |
| BsrBI | CCGCTC | 3 cut(s) | 551, 857, 1336 |
| BsrFI | RCCGGY | 1 cut(s) | 1756 |
| BsrI | ACTGG | 5 cut(s) | 542, 1556, 1567, 1575, 1678 |
| BssAI | RCCGGY | 1 cut(s) | 1756 |
| BssMI | GATC | 8 cut(s) | 339, 600, 634, 697, 966, 1081, 1416, 1723 |
| BssNI | GRCGYC | 4 cut(s) | 16, 456, 509, 881 |
| BssSI | CACGAG | 3 cut(s) | 287, 974, 1308 |
| BssT1I | CCWWGG | 4 cut(s) | 304, 1281, 1689, 1714 |
| Bst2BI | CACGAG | 3 cut(s) | 287, 974, 1308 |
| Bst2UI | CCWGG | 8 cut(s) | 121, 213, 344, 460, 720, 845, 1485, 1739 |
| Bst4CI | ACNGT | 6 cut(s) | 137, 145, 704, 1012, 1147, 1170 |
| Bst6I | CTCTTC | 2 cut(s) | 99, 1761 |
| BstACI | GRCGYC | 4 cut(s) | 16, 456, 509, 881 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 275 |
| BstBAI | YACGTR | 1 cut(s) | 131 |
| BstC8I | GCNNGC | 8 cut(s) | 70, 97, 233, 267, 787, 1133, 1316, 1392 |
| BstDEI | CTNAG | 7 cut(s) | 81, 1086, 1226, 1266, 1319, 1404, 1700 |
| BstDSI | CCRYGG | 3 cut(s) | 1446, 1689, 1714 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1379 |
| BstF5I | GGATG | 6 cut(s) | 469, 934, 1144, 1309, 1474, 1687 |
| BstFNI | CGCG | 5 cut(s) | 574, 576, 1067, 1122, 1639 |
| BstH2I | RGCGCY | 4 cut(s) | 19, 66, 459, 512 |
| BstHHI | GCGC | 7 cut(s) | 18, 65, 458, 511, 576, 1122, 1639 |
| BstKTI | GATC | 8 cut(s) | 342, 603, 637, 700, 969, 1084, 1419, 1726 |
| BstMAI | GTCTC | 2 cut(s) | 950, 1235 |
| BstMBI | GATC | 8 cut(s) | 339, 600, 634, 697, 966, 1081, 1416, 1723 |
| BstMCI | CGRYCG | 2 cut(s) | 177, 1345 |
| BstNI | CCWGG | 8 cut(s) | 121, 213, 344, 460, 720, 845, 1485, 1739 |
| BstNSI | RCATGY | 1 cut(s) | 1201 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 173, 686 |
| BstSFI | CTRYAG | 2 cut(s) | 141, 1707 |
| BstSLI | GKGCMC | 4 cut(s) | 233, 903, 1197, 1544 |
| BstUI | CGCG | 5 cut(s) | 574, 576, 1067, 1122, 1639 |
| BstV2I | GAAGAC | 2 cut(s) | 1268, 1605 |
| BstX2I | RGATCY | 3 cut(s) | 339, 634, 1416 |
| BstYI | RGATCY | 3 cut(s) | 339, 634, 1416 |
| BsuRI | GGCC | 8 cut(s) | 163, 408, 730, 789, 848, 901, 1483, 1662 |
| BtgI | CCRYGG | 3 cut(s) | 1446, 1689, 1714 |
| BtgZI | GCGATG | 2 cut(s) | 831, 1308 |
| BtrI | CACGTC | 1 cut(s) | 688 |
| BtsCI | GGATG | 6 cut(s) | 469, 934, 1144, 1309, 1474, 1687 |
| BtsI | GCAGTG | 1 cut(s) | 1654 |
| BtsIMutI | CAGTG | 4 cut(s) | 700, 1582, 1654, 1671 |
| BveI | ACCTGC | 2 cut(s) | 636, 1533 |
| Cac8I | GCNNGC | 8 cut(s) | 70, 97, 233, 267, 787, 1133, 1316, 1392 |
| CaiI | CAGNNNCTG | 2 cut(s) | 343, 400 |
| CfoI | GCGC | 7 cut(s) | 18, 65, 458, 511, 576, 1122, 1639 |
| Cfr10I | RCCGGY | 1 cut(s) | 1756 |
| Cfr13I | GGNCC | 8 cut(s) | 161, 406, 847, 899, 900, 1143, 1384, 1522 |
| CseI | GACGC | 4 cut(s) | 580, 789, 959, 1569 |
| Csp6I | GTAC | 3 cut(s) | 138, 424, 484 |
| CviAII | CATG | 8 cut(s) | 217, 896, 1198, 1214, 1664, 1690, 1715, 1797 |
| CviQI | GTAC | 3 cut(s) | 138, 424, 484 |
| DdeI | CTNAG | 7 cut(s) | 81, 1086, 1226, 1266, 1319, 1404, 1700 |
| DinI | GGCGCC | 3 cut(s) | 17, 457, 510 |
| DpnI | GATC | 8 cut(s) | 341, 602, 636, 699, 968, 1083, 1418, 1725 |
| DpnII | GATC | 8 cut(s) | 339, 600, 634, 697, 966, 1081, 1416, 1723 |
| DraIII | CACNNNGTG | 1 cut(s) | 654 |
| EaeI | YGGCCR | 2 cut(s) | 787, 1660 |
| Eam1104I | CTCTTC | 2 cut(s) | 99, 1761 |
| EarI | CTCTTC | 2 cut(s) | 99, 1761 |
| EciI | GGCGGA | 1 cut(s) | 433 |
| Eco130I | CCWWGG | 4 cut(s) | 304, 1281, 1689, 1714 |
| Eco147I | AGGCCT | 1 cut(s) | 730 |
| Eco24I | GRGCYC | 2 cut(s) | 743, 903 |
| Eco31I | GGTCTC | 2 cut(s) | 950, 1235 |
| Eco47I | GGWCC | 3 cut(s) | 1143, 1384, 1522 |
| Eco57I | CTGAAG | 6 cut(s) | 212, 422, 717, 890, 1400, 1406 |
| Eco88I | CYCGRG | 1 cut(s) | 20 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1379 |
| EcoO109I | RGGNCCY | 2 cut(s) | 847, 900 |
| EcoRI | GAATTC | 1 cut(s) | 1094 |
| EcoRII | CCWGG | 8 cut(s) | 119, 211, 342, 458, 718, 843, 1483, 1737 |
| EcoT14I | CCWWGG | 4 cut(s) | 304, 1281, 1689, 1714 |
| EcoT38I | GRGCYC | 2 cut(s) | 743, 903 |
| EgeI | GGCGCC | 3 cut(s) | 17, 457, 510 |
| EheI | GGCGCC | 3 cut(s) | 17, 457, 510 |
| ErhI | CCWWGG | 4 cut(s) | 304, 1281, 1689, 1714 |
| FaeI | CATG | 8 cut(s) | 220, 899, 1201, 1217, 1667, 1693, 1718, 1800 |
| FaqI | GGGAC | 2 cut(s) | 1156, 1549 |
| FatI | CATG | 8 cut(s) | 216, 895, 1197, 1213, 1663, 1689, 1714, 1796 |
| FauI | CCCGC | 9 cut(s) | 148, 240, 544, 718, 790, 859, 1115, 1419, 1601 |
| FblI | GTMKAC | 3 cut(s) | 556, 669, 706 |
| FokI | GGATG | 6 cut(s) | 476, 941, 1151, 1316, 1481, 1694 |
| FriOI | GRGCYC | 2 cut(s) | 743, 903 |
| FspBI | CTAG | 7 cut(s) | 30, 54, 69, 96, 266, 632, 1629 |
| GlaI | GCGC | 7 cut(s) | 17, 64, 457, 510, 575, 1121, 1638 |
| GsaI | CCCAGC | 3 cut(s) | 1026, 1259, 1357 |
| GsuI | CTGGAG | 3 cut(s) | 320, 855, 1379 |
| HaeII | RGCGCY | 4 cut(s) | 19, 66, 459, 512 |
| HaeIII | GGCC | 8 cut(s) | 163, 408, 730, 789, 848, 901, 1483, 1662 |
| HapII | CCGG | 4 cut(s) | 651, 743, 1480, 1757 |
| HgaI | GACGC | 4 cut(s) | 580, 789, 959, 1569 |
| HhaI | GCGC | 7 cut(s) | 18, 65, 458, 511, 576, 1122, 1639 |
| Hin1I | GRCGYC | 4 cut(s) | 16, 456, 509, 881 |
| Hin1II | CATG | 8 cut(s) | 220, 899, 1201, 1217, 1667, 1693, 1718, 1800 |
| Hin6I | GCGC | 7 cut(s) | 16, 63, 456, 509, 574, 1120, 1637 |
| HinP1I | GCGC | 7 cut(s) | 16, 63, 456, 509, 574, 1120, 1637 |
| HincII | GTYRAC | 4 cut(s) | 148, 670, 681, 707 |
| HindII | GTYRAC | 4 cut(s) | 148, 670, 681, 707 |
| HinfI | GANTC | 3 cut(s) | 113, 619, 1049 |
| HpaII | CCGG | 4 cut(s) | 651, 743, 1480, 1757 |
| HphI | GGTGA | 9 cut(s) | 113, 232, 304, 640, 760, 1018, 1408, 1678, 1705 |
| Hpy166II | GTNNAC | 8 cut(s) | 148, 286, 557, 670, 681, 707, 885, 1155 |
| Hpy188I | TCNGA | 9 cut(s) | 192, 532, 548, 736, 1077, 1227, 1626, 1723, 1728 |
| Hpy188III | TCNNGA | 4 cut(s) | 287, 337, 964, 1085 |
| Hpy8I | GTNNAC | 8 cut(s) | 148, 286, 557, 670, 681, 707, 885, 1155 |
| Hpy99I | CGWCG | 3 cut(s) | 692, 805, 1585 |
| HpyCH4III | ACNGT | 6 cut(s) | 137, 145, 704, 1012, 1147, 1170 |
| HpyCH4IV | ACGT | 6 cut(s) | 130, 515, 559, 687, 881, 1562 |
| HpyCH4V | TGCA | 4 cut(s) | 467, 676, 695, 1213 |
| HpyF3I | CTNAG | 7 cut(s) | 81, 1086, 1226, 1266, 1319, 1404, 1700 |
| HpySE526I | ACGT | 6 cut(s) | 130, 515, 559, 687, 881, 1562 |
| Hsp92I | GRCGYC | 4 cut(s) | 16, 456, 509, 881 |
| Hsp92II | CATG | 8 cut(s) | 220, 899, 1201, 1217, 1667, 1693, 1718, 1800 |
| HspAI | GCGC | 7 cut(s) | 16, 63, 456, 509, 574, 1120, 1637 |
| KasI | GGCGCC | 3 cut(s) | 15, 455, 508 |
| Kzo9I | GATC | 8 cut(s) | 339, 600, 634, 697, 966, 1081, 1416, 1723 |
| LmnI | GCTCC | 5 cut(s) | 840, 862, 1360, 1450, 1789 |
| LweI | GCATC | 5 cut(s) | 454, 741, 1285, 1294, 1686 |
| MaeI | CTAG | 7 cut(s) | 30, 54, 69, 96, 266, 632, 1629 |
| MaeII | ACGT | 6 cut(s) | 130, 515, 559, 687, 881, 1562 |
| MaeIII | GTNAC | 5 cut(s) | 56, 131, 310, 1006, 1684 |
| MalI | GATC | 8 cut(s) | 341, 602, 636, 699, 968, 1083, 1418, 1725 |
| MbiI | CCGCTC | 3 cut(s) | 551, 857, 1336 |
| MboI | GATC | 8 cut(s) | 339, 600, 634, 697, 966, 1081, 1416, 1723 |
| MboII | GAAGA | 8 cut(s) | 116, 289, 629, 947, 991, 1273, 1605, 1778 |
| MflI | RGATCY | 3 cut(s) | 339, 634, 1416 |
| MhlI | GDGCHC | 5 cut(s) | 233, 743, 903, 1197, 1544 |
| MlsI | TGGCCA | 2 cut(s) | 789, 1662 |
| MluCI | AATT | 1 cut(s) | 1094 |
| MluNI | TGGCCA | 2 cut(s) | 789, 1662 |
| Mly113I | GGCGCC | 3 cut(s) | 16, 456, 509 |
| MlyI | GAGTC | 2 cut(s) | 122, 1043 |
| Mox20I | TGGCCA | 2 cut(s) | 789, 1662 |
| MscI | TGGCCA | 2 cut(s) | 789, 1662 |
| MseI | TTAA | 7 cut(s) | 183, 525, 564, 1178, 1235, 1530, 1743 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1110, 1691, 1694 |
| Msp20I | TGGCCA | 2 cut(s) | 789, 1662 |
| MspA1I | CMGCKG | 9 cut(s) | 80, 242, 470, 785, 1003, 1357, 1426, 1753, 1778 |
| MspI | CCGG | 4 cut(s) | 651, 743, 1480, 1757 |
| MvaI | CCWGG | 8 cut(s) | 121, 213, 344, 460, 720, 845, 1485, 1739 |
| MvnI | CGCG | 5 cut(s) | 574, 576, 1067, 1122, 1639 |
| NarI | GGCGCC | 3 cut(s) | 16, 456, 509 |
| NciI | CCSGG | 3 cut(s) | 652, 743, 1480 |
| NcoI | CCATGG | 2 cut(s) | 1689, 1714 |
| NdeII | GATC | 8 cut(s) | 339, 600, 634, 697, 966, 1081, 1416, 1723 |
| NheI | GCTAGC | 3 cut(s) | 68, 95, 265 |
| NlaIII | CATG | 8 cut(s) | 220, 899, 1201, 1217, 1667, 1693, 1718, 1800 |
| NlaIV | GGNNCC | 9 cut(s) | 17, 457, 510, 842, 849, 901, 902, 1144, 1543 |
| NmeAIII | GCCGAG | 1 cut(s) | 1163 |
| NmuCI | GTSAC | 4 cut(s) | 131, 310, 1006, 1684 |
| NspI | RCATGY | 1 cut(s) | 1201 |
| OliI | CACNNNNGTG | 2 cut(s) | 1110, 1691 |
| PasI | CCCWGGG | 1 cut(s) | 719 |
| PceI | AGGCCT | 1 cut(s) | 730 |
| PciI | ACATGT | 1 cut(s) | 1197 |
| PfeI | GAWTC | 1 cut(s) | 619 |
| PflFI | GACNNNGTC | 2 cut(s) | 1370, 1553 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 343, 1551 |
| PleI | GAGTC | 2 cut(s) | 121, 1043 |
| PluTI | GGCGCC | 3 cut(s) | 19, 459, 512 |
| PpsI | GAGTC | 2 cut(s) | 121, 1043 |
| Ppu21I | YACGTR | 1 cut(s) | 131 |
| PscI | ACATGT | 1 cut(s) | 1197 |
| PshAI | GACNNNNGTC | 2 cut(s) | 173, 686 |
| Psp1406I | AACGTT | 1 cut(s) | 515 |
| Psp6I | CCWGG | 8 cut(s) | 119, 211, 342, 458, 718, 843, 1483, 1737 |
| PspFI | CCCAGC | 3 cut(s) | 1022, 1255, 1353 |
| PspGI | CCWGG | 8 cut(s) | 119, 211, 342, 458, 718, 843, 1483, 1737 |
| PspN4I | GGNNCC | 9 cut(s) | 17, 457, 510, 842, 849, 901, 902, 1144, 1543 |
| PspOMI | GGGCCC | 1 cut(s) | 899 |
| PspPI | GGNCC | 8 cut(s) | 161, 406, 847, 899, 900, 1143, 1384, 1522 |
| PstNI | CAGNNNCTG | 2 cut(s) | 343, 400 |
| PsuI | RGATCY | 3 cut(s) | 339, 634, 1416 |
| PsyI | GACNNNGTC | 2 cut(s) | 1370, 1553 |
| PvuII | CAGCTG | 3 cut(s) | 1003, 1357, 1753 |
| RsaI | GTAC | 3 cut(s) | 139, 425, 485 |
| RsaNI | GTAC | 3 cut(s) | 138, 424, 484 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1110, 1691, 1694 |
| SalI | GTCGAC | 2 cut(s) | 668, 705 |
| SaqAI | TTAA | 7 cut(s) | 183, 525, 564, 1178, 1235, 1530, 1743 |
| Sau3AI | GATC | 8 cut(s) | 339, 600, 634, 697, 966, 1081, 1416, 1723 |
| Sau96I | GGNCC | 8 cut(s) | 161, 406, 847, 899, 900, 1143, 1384, 1522 |
| SchI | GAGTC | 2 cut(s) | 122, 1043 |
| SduI | GDGCHC | 5 cut(s) | 233, 743, 903, 1197, 1544 |
| SfaNI | GCATC | 5 cut(s) | 454, 741, 1285, 1294, 1686 |
| SfcI | CTRYAG | 2 cut(s) | 141, 1707 |
| SfoI | GGCGCC | 3 cut(s) | 17, 457, 510 |
| SinI | GGWCC | 3 cut(s) | 1143, 1384, 1522 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1110, 1691, 1694 |
| Sse9I | AATT | 1 cut(s) | 1094 |
| SseBI | AGGCCT | 1 cut(s) | 730 |
| SspDI | GGCGCC | 3 cut(s) | 15, 455, 508 |
| SspI | AATATT | 1 cut(s) | 388 |
| SspMI | CTAG | 7 cut(s) | 30, 54, 69, 96, 266, 632, 1629 |
| StuI | AGGCCT | 1 cut(s) | 730 |
| StyI | CCWWGG | 4 cut(s) | 304, 1281, 1689, 1714 |
| TaaI | ACNGT | 6 cut(s) | 137, 145, 704, 1012, 1147, 1170 |
| TaiI | ACGT | 6 cut(s) | 133, 518, 562, 690, 884, 1565 |
| TaqI | TCGA | 4 cut(s) | 589, 669, 706, 1583 |
| TaqII | GACCGA | 1 cut(s) | 793 |
| TasI | AATT | 1 cut(s) | 1094 |
| TauI | GCSGC | 7 cut(s) | 68, 763, 857, 1276, 1439, 1496, 1778 |
| TfiI | GAWTC | 1 cut(s) | 619 |
| Tru1I | TTAA | 7 cut(s) | 183, 525, 564, 1178, 1235, 1530, 1743 |
| Tru9I | TTAA | 7 cut(s) | 183, 525, 564, 1178, 1235, 1530, 1743 |
| TscAI | CASTG | 4 cut(s) | 707, 1582, 1654, 1678 |
| TseFI | GTSAC | 4 cut(s) | 131, 310, 1006, 1684 |
| Tsp45I | GTSAC | 4 cut(s) | 131, 310, 1006, 1684 |
| TspDTI | ATGAA | 1 cut(s) | 1485 |
| TspGWI | ACGGA | 3 cut(s) | 941, 1463, 1606 |
| TspRI | CASTG | 4 cut(s) | 707, 1582, 1654, 1678 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1370, 1553 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 343, 1551 |
| VpaK11BI | GGWCC | 3 cut(s) | 1143, 1384, 1522 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1379 |
| XapI | RAATTY | 1 cut(s) | 1094 |
| XceI | RCATGY | 1 cut(s) | 1201 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1670 |
| XmiI | GTMKAC | 3 cut(s) | 556, 669, 706 |
| XspI | CTAG | 7 cut(s) | 30, 54, 69, 96, 266, 632, 1629 |
| ZraI | GACGTC | 1 cut(s) | 882 |