No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1263 |
| Acc36I | ACCTGC | 1 cut(s) | 131 |
| AccB1I | GGYRCC | 2 cut(s) | 465, 1126 |
| AccBSI | CCGCTC | 3 cut(s) | 528, 555, 897 |
| AccI | GTMKAC | 2 cut(s) | 119, 154 |
| AccII | CGCG | 5 cut(s) | 41, 167, 588, 809, 883 |
| AclWI | GGATC | 3 cut(s) | 58, 197, 845 |
| AcoI | YGGCCR | 4 cut(s) | 824, 956, 1019, 1245 |
| AcsI | RAATTY | 1 cut(s) | 207 |
| AcuI | CTGAAG | 1 cut(s) | 600 |
| AcyI | GRCGYC | 4 cut(s) | 466, 670, 803, 1147 |
| AfaI | GTAC | 3 cut(s) | 13, 226, 1221 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 291, 690, 833, 950, 1188, 1216, 1261 |
| AflIII | ACRYGT | 2 cut(s) | 855, 1109 |
| AgsI | TTSAA | 3 cut(s) | 1033, 1041, 1116 |
| AjiI | CACGTC | 2 cut(s) | 858, 1161 |
| AleI | CACNNNNGTG | 1 cut(s) | 332 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 517, 549 |
| AluBI | AGCT | 7 cut(s) | 433, 620, 699, 816, 921, 1000, 1213 |
| AluI | AGCT | 7 cut(s) | 433, 620, 699, 816, 921, 1000, 1213 |
| Alw21I | GWGCWC | 2 cut(s) | 701, 1012 |
| Alw26I | GTCTC | 7 cut(s) | 167, 262, 329, 368, 724, 744, 864 |
| AlwI | GGATC | 3 cut(s) | 58, 197, 845 |
| Ama87I | CYCGRG | 1 cut(s) | 1094 |
| ApaI | GGGCCC | 2 cut(s) | 408, 1095 |
| ApeKI | GCWGC | 7 cut(s) | 678, 885, 888, 933, 1015, 1024, 1232 |
| ApoI | RAATTY | 1 cut(s) | 207 |
| AspLEI | GCGC | 4 cut(s) | 279, 468, 590, 885 |
| AspS9I | GGNCC | 8 cut(s) | 243, 404, 405, 423, 1091, 1092, 1097, 1265 |
| AsuC2I | CCSGG | 4 cut(s) | 684, 1095, 1096, 1183 |
| AsuHPI | GGTGA | 5 cut(s) | 157, 315, 319, 346, 991 |
| AsuNHI | GCTAGC | 1 cut(s) | 237 |
| AvaI | CYCGRG | 1 cut(s) | 1094 |
| AvaII | GGWCC | 1 cut(s) | 1265 |
| BaeGI | GKGCMC | 2 cut(s) | 408, 1095 |
| BanI | GGYRCC | 2 cut(s) | 465, 1126 |
| BanII | GRGCYC | 3 cut(s) | 408, 701, 1095 |
| BbsI | GAAGAC | 1 cut(s) | 1069 |
| Bbv12I | GWGCWC | 2 cut(s) | 701, 1012 |
| BbvCI | CCTCAGC | 1 cut(s) | 1001 |
| BbvI | GCAGC | 7 cut(s) | 690, 872, 875, 945, 1002, 1011, 1244 |
| BccI | CCATC | 4 cut(s) | 180, 334, 551, 948 |
| BceAI | ACGGC | 4 cut(s) | 371, 457, 611, 847 |
| BcnI | CCSGG | 4 cut(s) | 684, 1095, 1096, 1183 |
| BcoDI | GTCTC | 7 cut(s) | 167, 262, 329, 368, 724, 744, 864 |
| BfaI | CTAG | 1 cut(s) | 238 |
| BfmI | CTRYAG | 3 cut(s) | 254, 889, 1214 |
| BfoI | RGCGCY | 2 cut(s) | 280, 469 |
| BfuAI | ACCTGC | 1 cut(s) | 131 |
| BlpI | GCTNAGC | 1 cut(s) | 280 |
| Bme1390I | CCNGG | 4 cut(s) | 684, 1095, 1096, 1183 |
| Bme18I | GGWCC | 1 cut(s) | 1265 |
| BmeT110I | CYCGRG | 1 cut(s) | 1094 |
| BmgBI | CACGTC | 2 cut(s) | 858, 1161 |
| BmgT120I | GGNCC | 8 cut(s) | 243, 404, 405, 423, 1091, 1092, 1097, 1265 |
| BmrFI | CCNGG | 4 cut(s) | 684, 1095, 1096, 1183 |
| BmsI | GCATC | 2 cut(s) | 296, 302 |
| BmtI | GCTAGC | 1 cut(s) | 241 |
| BpiI | GAAGAC | 1 cut(s) | 1069 |
| BpmI | CTGGAG | 2 cut(s) | 706, 862 |
| Bpu10I | CCTNAGC | 2 cut(s) | 700, 1001 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 280 |
| BpuMI | CCSGG | 4 cut(s) | 684, 1095, 1096, 1183 |
| BsaHI | GRCGYC | 4 cut(s) | 466, 670, 803, 1147 |
| BsaI | GGTCTC | 1 cut(s) | 724 |
| BsaJI | CCNNGG | 6 cut(s) | 230, 290, 330, 682, 807, 1094 |
| BsaWI | WCCGGW | 1 cut(s) | 297 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 208, 238, 374, 404, 517, 547, 751, 781 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 291, 690, 833, 950, 1188, 1216, 1261 |
| Bse118I | RCCGGY | 1 cut(s) | 1167 |
| Bse1I | ACTGG | 5 cut(s) | 105, 285, 321, 758, 779 |
| BseDI | CCNNGG | 6 cut(s) | 230, 290, 330, 682, 807, 1094 |
| BseGI | GGATG | 2 cut(s) | 959, 1251 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 291, 690, 833, 950, 1188, 1216, 1261 |
| BseMII | CTCAG | 4 cut(s) | 257, 350, 714, 992 |
| BseNI | ACTGG | 5 cut(s) | 105, 285, 321, 758, 779 |
| BseRI | GAGGAG | 1 cut(s) | 163 |
| BseSI | GKGCMC | 2 cut(s) | 408, 1095 |
| BseX3I | CGGCCG | 1 cut(s) | 1019 |
| BseXI | GCAGC | 7 cut(s) | 690, 872, 875, 945, 1002, 1011, 1244 |
| BseYI | CCCAGC | 6 cut(s) | 245, 558, 972, 1209, 1268, 1280 |
| BsgI | GTGCAG | 1 cut(s) | 952 |
| Bsh1236I | CGCG | 5 cut(s) | 41, 167, 588, 809, 883 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1022, 1172 |
| BshNI | GGYRCC | 2 cut(s) | 465, 1126 |
| BsiEI | CGRYCG | 2 cut(s) | 1022, 1172 |
| BsiHKAI | GWGCWC | 2 cut(s) | 701, 1012 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1094 |
| BsiSI | CCGG | 5 cut(s) | 298, 684, 1095, 1168, 1183 |
| BslFI | GGGAC | 5 cut(s) | 17, 785, 814, 1165, 1251 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 291, 690, 833, 950, 1188, 1216, 1261 |
| BsmAI | GTCTC | 7 cut(s) | 167, 262, 329, 368, 724, 744, 864 |
| BsmBI | CGTCTC | 2 cut(s) | 262, 864 |
| BsmFI | GGGAC | 5 cut(s) | 17, 785, 814, 1165, 1251 |
| Bso31I | GGTCTC | 1 cut(s) | 724 |
| BsoBI | CYCGRG | 1 cut(s) | 1094 |
| Bsp120I | GGGCCC | 2 cut(s) | 404, 1091 |
| Bsp1286I | GDGCHC | 4 cut(s) | 408, 701, 1012, 1095 |
| Bsp143I | GATC | 5 cut(s) | 50, 189, 480, 837, 878 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 280 |
| Bsp68I | TCGCGA | 1 cut(s) | 167 |
| BspCNI | CTCAG | 4 cut(s) | 258, 351, 713, 993 |
| BspFNI | CGCG | 5 cut(s) | 41, 167, 588, 809, 883 |
| BspHI | TCATGA | 1 cut(s) | 512 |
| BspMAI | CTGCAG | 1 cut(s) | 893 |
| BspMI | ACCTGC | 1 cut(s) | 131 |
| BspOI | GCTAGC | 1 cut(s) | 241 |
| BspPI | GGATC | 3 cut(s) | 58, 197, 845 |
| BspQI | GCTCTTC | 1 cut(s) | 689 |
| BspT107I | GGYRCC | 2 cut(s) | 465, 1126 |
| BspTNI | GGTCTC | 1 cut(s) | 724 |
| BsrBI | CCGCTC | 3 cut(s) | 528, 555, 897 |
| BsrFI | RCCGGY | 1 cut(s) | 1167 |
| BsrI | ACTGG | 5 cut(s) | 105, 285, 321, 758, 779 |
| BssAI | RCCGGY | 1 cut(s) | 1167 |
| BssECI | CCNNGG | 6 cut(s) | 230, 290, 330, 682, 807, 1094 |
| BssMI | GATC | 5 cut(s) | 50, 189, 480, 837, 878 |
| BssNI | GRCGYC | 4 cut(s) | 466, 670, 803, 1147 |
| BssT1I | CCWWGG | 1 cut(s) | 330 |
| Bst4CI | ACNGT | 2 cut(s) | 255, 447 |
| Bst6I | CTCTTC | 3 cut(s) | 26, 371, 689 |
| BstACI | GRCGYC | 4 cut(s) | 466, 670, 803, 1147 |
| BstDEI | CTNAG | 7 cut(s) | 266, 280, 359, 674, 700, 994, 1001 |
| BstDSI | CCRYGG | 1 cut(s) | 807 |
| BstEII | GGTNACC | 1 cut(s) | 984 |
| BstF5I | GGATG | 2 cut(s) | 959, 1251 |
| BstFNI | CGCG | 5 cut(s) | 41, 167, 588, 809, 883 |
| BstH2I | RGCGCY | 2 cut(s) | 280, 469 |
| BstHHI | GCGC | 4 cut(s) | 279, 468, 590, 885 |
| BstKTI | GATC | 5 cut(s) | 53, 192, 483, 840, 881 |
| BstMAI | GTCTC | 7 cut(s) | 167, 262, 329, 368, 724, 744, 864 |
| BstMBI | GATC | 5 cut(s) | 50, 189, 480, 837, 878 |
| BstMCI | CGRYCG | 2 cut(s) | 1022, 1172 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 226, 315, 430, 502, 587, 894, 1021, 1024, 1161 |
| BstNSI | RCATGY | 1 cut(s) | 1113 |
| BstPI | GGTNACC | 1 cut(s) | 984 |
| BstSCI | CCNGG | 4 cut(s) | 682, 1093, 1094, 1181 |
| BstSFI | CTRYAG | 3 cut(s) | 254, 889, 1214 |
| BstSLI | GKGCMC | 2 cut(s) | 408, 1095 |
| BstUI | CGCG | 5 cut(s) | 41, 167, 588, 809, 883 |
| BstV1I | GCAGC | 7 cut(s) | 690, 872, 875, 945, 1002, 1011, 1244 |
| BstV2I | GAAGAC | 1 cut(s) | 1069 |
| BstX2I | RGATCY | 1 cut(s) | 837 |
| BstYI | RGATCY | 1 cut(s) | 837 |
| BstZI | CGGCCG | 1 cut(s) | 1019 |
| BtgI | CCRYGG | 1 cut(s) | 807 |
| BtgZI | GCGATG | 1 cut(s) | 199 |
| BtrI | CACGTC | 2 cut(s) | 858, 1161 |
| BtsCI | GGATG | 2 cut(s) | 959, 1251 |
| BtsIMutI | CAGTG | 2 cut(s) | 483, 1066 |
| BtuMI | TCGCGA | 1 cut(s) | 167 |
| BveI | ACCTGC | 1 cut(s) | 131 |
| CciI | TCATGA | 1 cut(s) | 512 |
| CciNI | GCGGCCGC | 1 cut(s) | 1019 |
| CfoI | GCGC | 4 cut(s) | 279, 468, 590, 885 |
| Cfr10I | RCCGGY | 1 cut(s) | 1167 |
| Cfr13I | GGNCC | 8 cut(s) | 243, 404, 405, 423, 1091, 1092, 1097, 1265 |
| Cfr42I | CCGCGG | 1 cut(s) | 810 |
| Cfr9I | CCCGGG | 1 cut(s) | 1094 |
| CseI | GACGC | 4 cut(s) | 178, 659, 811, 1136 |
| Csp6I | GTAC | 3 cut(s) | 12, 225, 1220 |
| CviAII | CATG | 3 cut(s) | 222, 513, 1110 |
| CviQI | GTAC | 3 cut(s) | 12, 225, 1220 |
| DdeI | CTNAG | 7 cut(s) | 266, 280, 359, 674, 700, 994, 1001 |
| DinI | GGCGCC | 1 cut(s) | 467 |
| DpnI | GATC | 5 cut(s) | 52, 191, 482, 839, 880 |
| DpnII | GATC | 5 cut(s) | 50, 189, 480, 837, 878 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1263 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1263 |
| EaeI | YGGCCR | 4 cut(s) | 824, 956, 1019, 1245 |
| EagI | CGGCCG | 1 cut(s) | 1019 |
| Eam1104I | CTCTTC | 3 cut(s) | 26, 371, 689 |
| EarI | CTCTTC | 3 cut(s) | 26, 371, 689 |
| EciI | GGCGGA | 9 cut(s) | 79, 81, 211, 751, 772, 799, 933, 1066, 1201 |
| Ecl136II | GAGCTC | 1 cut(s) | 699 |
| EclXI | CGGCCG | 1 cut(s) | 1019 |
| Eco130I | CCWWGG | 1 cut(s) | 330 |
| Eco24I | GRGCYC | 3 cut(s) | 408, 701, 1095 |
| Eco31I | GGTCTC | 1 cut(s) | 724 |
| Eco47I | GGWCC | 1 cut(s) | 1265 |
| Eco52I | CGGCCG | 1 cut(s) | 1019 |
| Eco53kI | GAGCTC | 1 cut(s) | 699 |
| Eco57I | CTGAAG | 1 cut(s) | 600 |
| Eco88I | CYCGRG | 1 cut(s) | 1094 |
| Eco91I | GGTNACC | 1 cut(s) | 984 |
| EcoICRI | GAGCTC | 1 cut(s) | 699 |
| EcoO109I | RGGNCCY | 3 cut(s) | 404, 1091, 1265 |
| EcoO65I | GGTNACC | 1 cut(s) | 984 |
| EcoT14I | CCWWGG | 1 cut(s) | 330 |
| EcoT38I | GRGCYC | 3 cut(s) | 408, 701, 1095 |
| EgeI | GGCGCC | 1 cut(s) | 467 |
| EheI | GGCGCC | 1 cut(s) | 467 |
| ErhI | CCWWGG | 1 cut(s) | 330 |
| Esp3I | CGTCTC | 2 cut(s) | 262, 864 |
| FaeI | CATG | 3 cut(s) | 225, 516, 1113 |
| FaiI | YATR | 9 cut(s) | 223, 503, 514, 583, 658, 797, 829, 928, 1111 |
| FaqI | GGGAC | 5 cut(s) | 17, 785, 814, 1165, 1251 |
| FatI | CATG | 3 cut(s) | 221, 512, 1109 |
| FauI | CCCGC | 9 cut(s) | 415, 433, 477, 521, 636, 814, 827, 929, 997 |
| FblI | GTMKAC | 2 cut(s) | 119, 154 |
| FokI | GGATG | 2 cut(s) | 966, 1238 |
| FriOI | GRGCYC | 3 cut(s) | 408, 701, 1095 |
| FspBI | CTAG | 1 cut(s) | 238 |
| GlaI | GCGC | 4 cut(s) | 278, 467, 589, 884 |
| GsaI | CCCAGC | 6 cut(s) | 249, 562, 976, 1213, 1272, 1284 |
| GsuI | CTGGAG | 2 cut(s) | 706, 862 |
| HaeII | RGCGCY | 2 cut(s) | 280, 469 |
| HapII | CCGG | 5 cut(s) | 298, 684, 1095, 1168, 1183 |
| HgaI | GACGC | 4 cut(s) | 178, 659, 811, 1136 |
| HhaI | GCGC | 4 cut(s) | 279, 468, 590, 885 |
| Hin1I | GRCGYC | 4 cut(s) | 466, 670, 803, 1147 |
| Hin1II | CATG | 3 cut(s) | 225, 516, 1113 |
| Hin6I | GCGC | 4 cut(s) | 277, 466, 588, 883 |
| HinP1I | GCGC | 4 cut(s) | 277, 466, 588, 883 |
| HincII | GTYRAC | 1 cut(s) | 120 |
| HindII | GTYRAC | 1 cut(s) | 120 |
| HindIII | AAGCTT | 1 cut(s) | 814 |
| HinfI | GANTC | 4 cut(s) | 151, 361, 487, 940 |
| HpaII | CCGG | 5 cut(s) | 298, 684, 1095, 1168, 1183 |
| HphI | GGTGA | 5 cut(s) | 157, 315, 319, 346, 991 |
| Hpy166II | GTNNAC | 4 cut(s) | 14, 120, 155, 261 |
| Hpy188I | TCNGA | 5 cut(s) | 291, 715, 1256, 1296, 1327 |
| Hpy188III | TCNNGA | 7 cut(s) | 166, 367, 484, 513, 723, 841, 1173 |
| Hpy8I | GTNNAC | 4 cut(s) | 14, 120, 155, 261 |
| Hpy99I | CGWCG | 4 cut(s) | 172, 597, 1260, 1296 |
| HpyAV | CCTTC | 7 cut(s) | 174, 414, 501, 514, 624, 1116, 1255 |
| HpyCH4III | ACNGT | 2 cut(s) | 255, 447 |
| HpyCH4IV | ACGT | 3 cut(s) | 271, 857, 1160 |
| HpyCH4V | TGCA | 3 cut(s) | 505, 891, 933 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 226, 315, 430, 502, 587, 894, 1021, 1024, 1161 |
| HpyF3I | CTNAG | 7 cut(s) | 266, 280, 359, 674, 700, 994, 1001 |
| HpySE526I | ACGT | 3 cut(s) | 271, 857, 1160 |
| Hsp92I | GRCGYC | 4 cut(s) | 466, 670, 803, 1147 |
| Hsp92II | CATG | 3 cut(s) | 225, 516, 1113 |
| HspAI | GCGC | 4 cut(s) | 277, 466, 588, 883 |
| KasI | GGCGCC | 1 cut(s) | 465 |
| KflI | GGGWCCC | 1 cut(s) | 1265 |
| KspI | CCGCGG | 1 cut(s) | 810 |
| Kzo9I | GATC | 5 cut(s) | 50, 189, 480, 837, 878 |
| LguI | GCTCTTC | 1 cut(s) | 689 |
| LmnI | GCTCC | 6 cut(s) | 142, 438, 525, 870, 894, 1007 |
| Lsp1109I | GCAGC | 7 cut(s) | 690, 872, 875, 945, 1002, 1011, 1244 |
| LweI | GCATC | 2 cut(s) | 296, 302 |
| MaeI | CTAG | 1 cut(s) | 238 |
| MaeII | ACGT | 3 cut(s) | 271, 857, 1160 |
| MaeIII | GTNAC | 3 cut(s) | 647, 984, 1148 |
| MalI | GATC | 5 cut(s) | 52, 191, 482, 839, 880 |
| MbiI | CCGCTC | 3 cut(s) | 528, 555, 897 |
| MboI | GATC | 5 cut(s) | 50, 189, 480, 837, 878 |
| MboII | GAAGA | 7 cut(s) | 40, 43, 349, 388, 429, 706, 1074 |
| MfeI | CAATTG | 1 cut(s) | 599 |
| MflI | RGATCY | 1 cut(s) | 837 |
| MhlI | GDGCHC | 4 cut(s) | 408, 701, 1012, 1095 |
| MluCI | AATT | 2 cut(s) | 207, 599 |
| Mly113I | GGCGCC | 1 cut(s) | 466 |
| MlyI | GAGTC | 4 cut(s) | 160, 370, 481, 949 |
| MmeI | TCCRAC | 3 cut(s) | 848, 1274, 1279 |
| MseI | TTAA | 2 cut(s) | 818, 1058 |
| MslI | CAYNNNNRTG | 2 cut(s) | 332, 928 |
| MspA1I | CMGCKG | 6 cut(s) | 809, 936, 1015, 1024, 1213, 1315 |
| MspI | CCGG | 5 cut(s) | 298, 684, 1095, 1168, 1183 |
| MspR9I | CCNGG | 4 cut(s) | 684, 1095, 1096, 1183 |
| MunI | CAATTG | 1 cut(s) | 599 |
| MvnI | CGCG | 5 cut(s) | 41, 167, 588, 809, 883 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 226, 315, 430, 502, 587, 894, 1021, 1024, 1161 |
| NarI | GGCGCC | 1 cut(s) | 466 |
| NciI | CCSGG | 4 cut(s) | 684, 1095, 1096, 1183 |
| NdeII | GATC | 5 cut(s) | 50, 189, 480, 837, 878 |
| NheI | GCTAGC | 1 cut(s) | 237 |
| NlaIII | CATG | 3 cut(s) | 225, 516, 1113 |
| NmeAIII | GCCGAG | 3 cut(s) | 255, 522, 601 |
| NmuCI | GTSAC | 1 cut(s) | 1148 |
| NotI | GCGGCCGC | 1 cut(s) | 1019 |
| NruI | TCGCGA | 1 cut(s) | 167 |
| NspI | RCATGY | 1 cut(s) | 1113 |
| OliI | CACNNNNGTG | 1 cut(s) | 332 |
| PagI | TCATGA | 1 cut(s) | 512 |
| PciI | ACATGT | 1 cut(s) | 1109 |
| PciSI | GCTCTTC | 1 cut(s) | 689 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 659, 1300 |
| PflFI | GACNNNGTC | 1 cut(s) | 1290 |
| PleI | GAGTC | 4 cut(s) | 159, 369, 481, 948 |
| PluTI | GGCGCC | 1 cut(s) | 469 |
| PpsI | GAGTC | 4 cut(s) | 159, 369, 481, 948 |
| PpuMI | RGGWCCY | 1 cut(s) | 1265 |
| PscI | ACATGT | 1 cut(s) | 1109 |
| Psp124BI | GAGCTC | 1 cut(s) | 701 |
| Psp5II | RGGWCCY | 1 cut(s) | 1265 |
| PspEI | GGTNACC | 1 cut(s) | 984 |
| PspFI | CCCAGC | 6 cut(s) | 245, 558, 972, 1209, 1268, 1280 |
| PspOMI | GGGCCC | 2 cut(s) | 404, 1091 |
| PspPI | GGNCC | 8 cut(s) | 243, 404, 405, 423, 1091, 1092, 1097, 1265 |
| PspPPI | RGGWCCY | 1 cut(s) | 1265 |
| PstI | CTGCAG | 1 cut(s) | 893 |
| PsuI | RGATCY | 1 cut(s) | 837 |
| PsyI | GACNNNGTC | 1 cut(s) | 1290 |
| PvuII | CAGCTG | 1 cut(s) | 1213 |
| RruI | TCGCGA | 1 cut(s) | 167 |
| RsaI | GTAC | 3 cut(s) | 13, 226, 1221 |
| RsaNI | GTAC | 3 cut(s) | 12, 225, 1220 |
| RseI | CAYNNNNRTG | 2 cut(s) | 332, 928 |
| SacI | GAGCTC | 1 cut(s) | 701 |
| SacII | CCGCGG | 1 cut(s) | 810 |
| SalI | GTCGAC | 1 cut(s) | 118 |
| SapI | GCTCTTC | 1 cut(s) | 689 |
| SaqAI | TTAA | 2 cut(s) | 818, 1058 |
| Sau3AI | GATC | 5 cut(s) | 50, 189, 480, 837, 878 |
| Sau96I | GGNCC | 8 cut(s) | 243, 404, 405, 423, 1091, 1092, 1097, 1265 |
| SchI | GAGTC | 4 cut(s) | 160, 370, 481, 949 |
| ScrFI | CCNGG | 4 cut(s) | 684, 1095, 1096, 1183 |
| SduI | GDGCHC | 4 cut(s) | 408, 701, 1012, 1095 |
| SfaNI | GCATC | 2 cut(s) | 296, 302 |
| SfcI | CTRYAG | 3 cut(s) | 254, 889, 1214 |
| SfoI | GGCGCC | 1 cut(s) | 467 |
| Sfr303I | CCGCGG | 1 cut(s) | 810 |
| SgrBI | CCGCGG | 1 cut(s) | 810 |
| SinI | GGWCC | 1 cut(s) | 1265 |
| SmaI | CCCGGG | 1 cut(s) | 1096 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 332, 928 |
| SrfI | GCCCGGGC | 1 cut(s) | 1096 |
| Sse9I | AATT | 2 cut(s) | 207, 599 |
| SspDI | GGCGCC | 1 cut(s) | 465 |
| SspI | AATATT | 1 cut(s) | 1104 |
| SspMI | CTAG | 1 cut(s) | 238 |
| SstI | GAGCTC | 1 cut(s) | 701 |
| StyD4I | CCNGG | 4 cut(s) | 682, 1093, 1094, 1181 |
| StyI | CCWWGG | 1 cut(s) | 330 |
| TaaI | ACNGT | 2 cut(s) | 255, 447 |
| TaiI | ACGT | 3 cut(s) | 274, 860, 1163 |
| TaqI | TCGA | 4 cut(s) | 22, 119, 764, 1172 |
| TaqII | GACCGA | 1 cut(s) | 1087 |
| TasI | AATT | 2 cut(s) | 207, 599 |
| Tru1I | TTAA | 2 cut(s) | 818, 1058 |
| Tru9I | TTAA | 2 cut(s) | 818, 1058 |
| TscAI | CASTG | 2 cut(s) | 483, 1073 |
| TseFI | GTSAC | 1 cut(s) | 1148 |
| TseI | GCWGC | 7 cut(s) | 678, 885, 888, 933, 1015, 1024, 1232 |
| Tsp45I | GTSAC | 1 cut(s) | 1148 |
| TspDTI | ATGAA | 3 cut(s) | 501, 866, 979 |
| TspGWI | ACGGA | 2 cut(s) | 129, 1273 |
| TspMI | CCCGGG | 1 cut(s) | 1094 |
| TspRI | CASTG | 2 cut(s) | 483, 1073 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1290 |
| VpaK11BI | GGWCC | 1 cut(s) | 1265 |
| XapI | RAATTY | 1 cut(s) | 207 |
| XceI | RCATGY | 1 cut(s) | 1113 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 328 |
| XmaI | CCCGGG | 1 cut(s) | 1094 |
| XmiI | GTMKAC | 2 cut(s) | 119, 154 |
| XspI | CTAG | 1 cut(s) | 238 |