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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 134, 146, 714 |
| AccBSI | CCGCTC | 1 cut(s) | 332 |
| AccII | CGCG | 1 cut(s) | 627 |
| AclWI | GGATC | 2 cut(s) | 375, 388 |
| AcoI | YGGCCR | 1 cut(s) | 517 |
| AcuI | CTGAAG | 1 cut(s) | 396 |
| AcyI | GRCGYC | 2 cut(s) | 585, 648 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 106, 163, 212, 377, 390, 455, 745, 792 |
| AgsI | TTSAA | 4 cut(s) | 18, 479, 546, 554 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 344 |
| AluBI | AGCT | 7 cut(s) | 21, 27, 302, 353, 621, 766, 804 |
| AluI | AGCT | 7 cut(s) | 21, 27, 302, 353, 621, 766, 804 |
| Alw26I | GTCTC | 2 cut(s) | 314, 677 |
| AlwI | GGATC | 2 cut(s) | 375, 388 |
| Ama87I | CYCGRG | 2 cut(s) | 292, 327 |
| AoxI | GGCC | 3 cut(s) | 2, 189, 517 |
| ApeKI | GCWGC | 6 cut(s) | 80, 233, 282, 404, 779, 782 |
| AspLEI | GCGC | 4 cut(s) | 80, 531, 567, 812 |
| AspS9I | GGNCC | 2 cut(s) | 115, 323 |
| AsuHPI | GGTGA | 3 cut(s) | 45, 429, 807 |
| AsuNHI | GCTAGC | 1 cut(s) | 525 |
| AvaI | CYCGRG | 2 cut(s) | 292, 327 |
| AvaII | GGWCC | 2 cut(s) | 115, 323 |
| BaeGI | GKGCMC | 2 cut(s) | 100, 139 |
| BalI | TGGCCA | 1 cut(s) | 519 |
| BamHI | GGATCC | 1 cut(s) | 380 |
| BanI | GGYRCC | 3 cut(s) | 134, 146, 714 |
| BbvI | GCAGC | 6 cut(s) | 92, 245, 269, 416, 791, 794 |
| BccI | CCATC | 6 cut(s) | 111, 503, 611, 705, 782, 786 |
| BceAI | ACGGC | 3 cut(s) | 433, 450, 635 |
| BclI | TGATCA | 1 cut(s) | 35 |
| BcoDI | GTCTC | 2 cut(s) | 314, 677 |
| BfaI | CTAG | 4 cut(s) | 9, 75, 187, 526 |
| BfoI | RGCGCY | 2 cut(s) | 532, 568 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 471 |
| BlpI | GCTNAGC | 1 cut(s) | 598 |
| Bme18I | GGWCC | 2 cut(s) | 115, 323 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 344 |
| BmeT110I | CYCGRG | 2 cut(s) | 292, 327 |
| BmgT120I | GGNCC | 2 cut(s) | 115, 323 |
| BmiI | GGNNCC | 9 cut(s) | 116, 117, 136, 148, 172, 324, 382, 447, 716 |
| BmrI | ACTGGG | 1 cut(s) | 584 |
| BmsI | GCATC | 1 cut(s) | 278 |
| BmtI | GCTAGC | 1 cut(s) | 529 |
| BmuI | ACTGGG | 1 cut(s) | 584 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 47, 79 |
| BpmI | CTGGAG | 2 cut(s) | 43, 375 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 598 |
| BsaHI | GRCGYC | 2 cut(s) | 585, 648 |
| BsaJI | CCNNGG | 4 cut(s) | 293, 466, 520, 718 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 106, 163, 212, 377, 390, 455, 745, 792 |
| Bse118I | RCCGGY | 1 cut(s) | 48 |
| Bse1I | ACTGG | 3 cut(s) | 150, 392, 590 |
| Bse3DI | GCAATG | 1 cut(s) | 65 |
| BseDI | CCNNGG | 4 cut(s) | 293, 466, 520, 718 |
| BseGI | GGATG | 3 cut(s) | 221, 716, 797 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 106, 163, 212, 377, 390, 455, 745, 792 |
| BseMI | GCAATG | 1 cut(s) | 65 |
| BseMII | CTCAG | 4 cut(s) | 262, 441, 589, 679 |
| BseNI | ACTGG | 3 cut(s) | 150, 392, 590 |
| BseRI | GAGGAG | 4 cut(s) | 270, 450, 453, 458 |
| BseSI | GKGCMC | 2 cut(s) | 100, 139 |
| BseXI | GCAGC | 6 cut(s) | 92, 245, 269, 416, 791, 794 |
| BseYI | CCCAGC | 1 cut(s) | 349 |
| BsgI | GTGCAG | 1 cut(s) | 423 |
| Bsh1236I | CGCG | 1 cut(s) | 627 |
| BshFI | GGCC | 3 cut(s) | 4, 191, 519 |
| BshNI | GGYRCC | 3 cut(s) | 134, 146, 714 |
| BsiHKCI | CYCGRG | 2 cut(s) | 292, 327 |
| BsiSI | CCGG | 1 cut(s) | 49 |
| BslFI | GGGAC | 6 cut(s) | 101, 332, 336, 572, 638, 737 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 106, 163, 212, 377, 390, 455, 745, 792 |
| BsmAI | GTCTC | 2 cut(s) | 314, 677 |
| BsmFI | GGGAC | 6 cut(s) | 101, 332, 336, 572, 638, 737 |
| BsnI | GGCC | 3 cut(s) | 4, 191, 519 |
| BsoBI | CYCGRG | 2 cut(s) | 292, 327 |
| Bsp1286I | GDGCHC | 2 cut(s) | 100, 139 |
| Bsp143I | GATC | 2 cut(s) | 35, 380 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 598 |
| Bsp19I | CCATGG | 1 cut(s) | 718 |
| BspANI | GGCC | 3 cut(s) | 4, 191, 519 |
| BspCNI | CTCAG | 4 cut(s) | 263, 440, 590, 678 |
| BspFNI | CGCG | 1 cut(s) | 627 |
| BspLI | GGNNCC | 9 cut(s) | 116, 117, 136, 148, 172, 324, 382, 447, 716 |
| BspOI | GCTAGC | 1 cut(s) | 529 |
| BspPI | GGATC | 2 cut(s) | 375, 388 |
| BspT107I | GGYRCC | 3 cut(s) | 134, 146, 714 |
| BsrBI | CCGCTC | 1 cut(s) | 332 |
| BsrDI | GCAATG | 1 cut(s) | 65 |
| BsrFI | RCCGGY | 1 cut(s) | 48 |
| BsrI | ACTGG | 3 cut(s) | 150, 392, 590 |
| BssAI | RCCGGY | 1 cut(s) | 48 |
| BssECI | CCNNGG | 4 cut(s) | 293, 466, 520, 718 |
| BssMI | GATC | 2 cut(s) | 35, 380 |
| BssNI | GRCGYC | 2 cut(s) | 585, 648 |
| BssT1I | CCWWGG | 2 cut(s) | 520, 718 |
| Bst4CI | ACNGT | 1 cut(s) | 342 |
| BstACI | GRCGYC | 2 cut(s) | 585, 648 |
| BstC8I | GCNNGC | 6 cut(s) | 6, 29, 203, 300, 502, 527 |
| BstDEI | CTNAG | 5 cut(s) | 271, 427, 598, 665, 729 |
| BstDSI | CCRYGG | 2 cut(s) | 466, 718 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 375 |
| BstF5I | GGATG | 3 cut(s) | 221, 716, 797 |
| BstFNI | CGCG | 1 cut(s) | 627 |
| BstH2I | RGCGCY | 2 cut(s) | 532, 568 |
| BstHHI | GCGC | 4 cut(s) | 80, 531, 567, 812 |
| BstKTI | GATC | 2 cut(s) | 38, 383 |
| BstMAI | GTCTC | 2 cut(s) | 314, 677 |
| BstMBI | GATC | 2 cut(s) | 35, 380 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 69, 230, 288, 471 |
| BstSLI | GKGCMC | 2 cut(s) | 100, 139 |
| BstUI | CGCG | 1 cut(s) | 627 |
| BstV1I | GCAGC | 6 cut(s) | 92, 245, 269, 416, 791, 794 |
| BstX2I | RGATCY | 1 cut(s) | 380 |
| BstYI | RGATCY | 1 cut(s) | 380 |
| BsuRI | GGCC | 3 cut(s) | 4, 191, 519 |
| BtgI | CCRYGG | 2 cut(s) | 466, 718 |
| BtgZI | GCGATG | 1 cut(s) | 519 |
| BtsCI | GGATG | 3 cut(s) | 221, 716, 797 |
| Cac8I | GCNNGC | 6 cut(s) | 6, 29, 203, 300, 502, 527 |
| CfoI | GCGC | 4 cut(s) | 80, 531, 567, 812 |
| Cfr10I | RCCGGY | 1 cut(s) | 48 |
| Cfr13I | GGNCC | 2 cut(s) | 115, 323 |
| CseI | GACGC | 4 cut(s) | 255, 288, 574, 656 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 108, 143 |
| CviAII | CATG | 2 cut(s) | 678, 719 |
| DdeI | CTNAG | 5 cut(s) | 271, 427, 598, 665, 729 |
| DpnI | GATC | 2 cut(s) | 37, 382 |
| DpnII | GATC | 2 cut(s) | 35, 380 |
| DriI | GACNNNNNGTC | 1 cut(s) | 344 |
| EaeI | YGGCCR | 1 cut(s) | 517 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 344 |
| EciI | GGCGGA | 1 cut(s) | 452 |
| Eco130I | CCWWGG | 2 cut(s) | 520, 718 |
| Eco147I | AGGCCT | 1 cut(s) | 191 |
| Eco47I | GGWCC | 2 cut(s) | 115, 323 |
| Eco57I | CTGAAG | 1 cut(s) | 396 |
| Eco88I | CYCGRG | 2 cut(s) | 292, 327 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 375 |
| EcoO109I | RGGNCCY | 2 cut(s) | 115, 323 |
| EcoT14I | CCWWGG | 2 cut(s) | 520, 718 |
| ErhI | CCWWGG | 2 cut(s) | 520, 718 |
| FaeI | CATG | 2 cut(s) | 681, 722 |
| FaiI | YATR | 5 cut(s) | 40, 366, 679, 690, 720 |
| FaqI | GGGAC | 6 cut(s) | 101, 332, 336, 572, 638, 737 |
| FatI | CATG | 2 cut(s) | 677, 718 |
| FbaI | TGATCA | 1 cut(s) | 35 |
| FokI | GGATG | 3 cut(s) | 228, 723, 804 |
| FspBI | CTAG | 4 cut(s) | 9, 75, 187, 526 |
| GlaI | GCGC | 4 cut(s) | 79, 530, 566, 811 |
| GsaI | CCCAGC | 1 cut(s) | 353 |
| GsuI | CTGGAG | 2 cut(s) | 43, 375 |
| HaeII | RGCGCY | 2 cut(s) | 532, 568 |
| HaeIII | GGCC | 3 cut(s) | 4, 191, 519 |
| HapII | CCGG | 1 cut(s) | 49 |
| HgaI | GACGC | 4 cut(s) | 255, 288, 574, 656 |
| HhaI | GCGC | 4 cut(s) | 80, 531, 567, 812 |
| Hin1I | GRCGYC | 2 cut(s) | 585, 648 |
| Hin1II | CATG | 2 cut(s) | 681, 722 |
| Hin6I | GCGC | 4 cut(s) | 78, 529, 565, 810 |
| HinP1I | GCGC | 4 cut(s) | 78, 529, 565, 810 |
| HindIII | AAGCTT | 1 cut(s) | 619 |
| HinfI | GANTC | 1 cut(s) | 725 |
| HpaII | CCGG | 1 cut(s) | 49 |
| HphI | GGTGA | 3 cut(s) | 45, 429, 807 |
| Hpy188I | TCNGA | 5 cut(s) | 67, 430, 613, 668, 752 |
| Hpy188III | TCNNGA | 2 cut(s) | 107, 374 |
| Hpy99I | CGWCG | 1 cut(s) | 249 |
| HpyAV | CCTTC | 2 cut(s) | 371, 554 |
| HpyCH4III | ACNGT | 1 cut(s) | 342 |
| HpyCH4V | TGCA | 4 cut(s) | 224, 404, 644, 681 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 69, 230, 288, 471 |
| HpyF3I | CTNAG | 5 cut(s) | 271, 427, 598, 665, 729 |
| Hsp92I | GRCGYC | 2 cut(s) | 585, 648 |
| Hsp92II | CATG | 2 cut(s) | 681, 722 |
| HspAI | GCGC | 4 cut(s) | 78, 529, 565, 810 |
| KflI | GGGWCCC | 1 cut(s) | 115 |
| Ksp22I | TGATCA | 1 cut(s) | 35 |
| Kzo9I | GATC | 2 cut(s) | 35, 380 |
| LmnI | GCTCC | 6 cut(s) | 24, 55, 68, 170, 356, 445 |
| Lsp1109I | GCAGC | 6 cut(s) | 92, 245, 269, 416, 791, 794 |
| LweI | GCATC | 1 cut(s) | 278 |
| MaeI | CTAG | 4 cut(s) | 9, 75, 187, 526 |
| MaeIII | GTNAC | 3 cut(s) | 152, 266, 276 |
| MalI | GATC | 2 cut(s) | 37, 382 |
| MbiI | CCGCTC | 1 cut(s) | 332 |
| MboI | GATC | 2 cut(s) | 35, 380 |
| MboII | GAAGA | 1 cut(s) | 810 |
| MflI | RGATCY | 1 cut(s) | 380 |
| MhlI | GDGCHC | 2 cut(s) | 100, 139 |
| MlsI | TGGCCA | 1 cut(s) | 519 |
| MluNI | TGGCCA | 1 cut(s) | 519 |
| MlyI | GAGTC | 1 cut(s) | 719 |
| MmeI | TCCRAC | 5 cut(s) | 90, 148, 391, 408, 591 |
| Mox20I | TGGCCA | 1 cut(s) | 519 |
| MscI | TGGCCA | 1 cut(s) | 519 |
| Msp20I | TGGCCA | 1 cut(s) | 519 |
| MspA1I | CMGCKG | 4 cut(s) | 83, 236, 353, 407 |
| MspI | CCGG | 1 cut(s) | 49 |
| MvnI | CGCG | 1 cut(s) | 627 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 69, 230, 288, 471 |
| NcoI | CCATGG | 1 cut(s) | 718 |
| NdeII | GATC | 2 cut(s) | 35, 380 |
| NheI | GCTAGC | 1 cut(s) | 525 |
| NlaIII | CATG | 2 cut(s) | 681, 722 |
| NlaIV | GGNNCC | 9 cut(s) | 116, 117, 136, 148, 172, 324, 382, 447, 716 |
| NmuCI | GTSAC | 1 cut(s) | 276 |
| PaeR7I | CTCGAG | 1 cut(s) | 327 |
| PceI | AGGCCT | 1 cut(s) | 191 |
| PflFI | GACNNNGTC | 1 cut(s) | 650 |
| PleI | GAGTC | 1 cut(s) | 719 |
| PpsI | GAGTC | 1 cut(s) | 719 |
| PpuMI | RGGWCCY | 2 cut(s) | 115, 323 |
| Psp5II | RGGWCCY | 2 cut(s) | 115, 323 |
| PspFI | CCCAGC | 1 cut(s) | 349 |
| PspN4I | GGNNCC | 9 cut(s) | 116, 117, 136, 148, 172, 324, 382, 447, 716 |
| PspPI | GGNCC | 2 cut(s) | 115, 323 |
| PspPPI | RGGWCCY | 2 cut(s) | 115, 323 |
| PspXI | VCTCGAGB | 1 cut(s) | 327 |
| PsuI | RGATCY | 1 cut(s) | 380 |
| PsyI | GACNNNGTC | 1 cut(s) | 650 |
| PvuII | CAGCTG | 1 cut(s) | 353 |
| Sau3AI | GATC | 2 cut(s) | 35, 380 |
| Sau96I | GGNCC | 2 cut(s) | 115, 323 |
| SchI | GAGTC | 1 cut(s) | 719 |
| SduI | GDGCHC | 2 cut(s) | 100, 139 |
| SfaNI | GCATC | 1 cut(s) | 278 |
| Sfr274I | CTCGAG | 1 cut(s) | 327 |
| SinI | GGWCC | 2 cut(s) | 115, 323 |
| SlaI | CTCGAG | 1 cut(s) | 327 |
| SmlI | CTYRAG | 1 cut(s) | 327 |
| SmoI | CTYRAG | 1 cut(s) | 327 |
| SseBI | AGGCCT | 1 cut(s) | 191 |
| SspMI | CTAG | 4 cut(s) | 9, 75, 187, 526 |
| StuI | AGGCCT | 1 cut(s) | 191 |
| StyI | CCWWGG | 2 cut(s) | 520, 718 |
| TaaI | ACNGT | 1 cut(s) | 342 |
| TaqI | TCGA | 1 cut(s) | 328 |
| TauI | GCSGC | 4 cut(s) | 176, 201, 239, 394 |
| TseFI | GTSAC | 1 cut(s) | 276 |
| TseI | GCWGC | 6 cut(s) | 80, 233, 282, 404, 779, 782 |
| Tsp45I | GTSAC | 1 cut(s) | 276 |
| Tth111I | GACNNNGTC | 1 cut(s) | 650 |
| VpaK11BI | GGWCC | 2 cut(s) | 115, 323 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 375 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 164 |
| XhoI | CTCGAG | 1 cut(s) | 327 |
| XspI | CTAG | 4 cut(s) | 9, 75, 187, 526 |