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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 311, 404 |
| AccBSI | CCGCTC | 3 cut(s) | 19, 82, 411 |
| AccII | CGCG | 4 cut(s) | 203, 484, 486, 573 |
| AclWI | GGATC | 1 cut(s) | 457 |
| AcoI | YGGCCR | 1 cut(s) | 204 |
| AcuI | CTGAAG | 3 cut(s) | 207, 320, 615 |
| AcyI | GRCGYC | 1 cut(s) | 312 |
| AfaI | GTAC | 2 cut(s) | 242, 435 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 76, 180, 181, 401, 446, 475 |
| AgsI | TTSAA | 2 cut(s) | 218, 226 |
| AjiI | CACGTC | 1 cut(s) | 346 |
| AluBI | AGCT | 2 cut(s) | 52, 106 |
| AluI | AGCT | 2 cut(s) | 52, 106 |
| Alw21I | GWGCWC | 1 cut(s) | 367 |
| Alw26I | GTCTC | 1 cut(s) | 49 |
| AlwI | GGATC | 1 cut(s) | 457 |
| Ama87I | CYCGRG | 2 cut(s) | 510, 549 |
| AoxI | GGCC | 2 cut(s) | 204, 276 |
| ApaI | GGGCCC | 1 cut(s) | 280 |
| ApeKI | GCWGC | 4 cut(s) | 118, 151, 209, 454 |
| AspLEI | GCGC | 5 cut(s) | 314, 486, 488, 505, 575 |
| AspS9I | GGNCC | 3 cut(s) | 276, 277, 555 |
| AsuC2I | CCSGG | 4 cut(s) | 511, 512, 550, 551 |
| AvaI | CYCGRG | 2 cut(s) | 510, 549 |
| AvaII | GGWCC | 1 cut(s) | 555 |
| BaeGI | GKGCMC | 2 cut(s) | 280, 409 |
| BanI | GGYRCC | 2 cut(s) | 311, 404 |
| BanII | GRGCYC | 1 cut(s) | 280 |
| Bbv12I | GWGCWC | 1 cut(s) | 367 |
| BbvI | GCAGC | 4 cut(s) | 130, 163, 196, 466 |
| BceAI | ACGGC | 2 cut(s) | 197, 535 |
| BciVI | GTATCC | 1 cut(s) | 187 |
| BcnI | CCSGG | 4 cut(s) | 511, 512, 550, 551 |
| BcoDI | GTCTC | 1 cut(s) | 49 |
| BfaI | CTAG | 3 cut(s) | 158, 281, 537 |
| BfmI | CTRYAG | 1 cut(s) | 74 |
| BfoI | RGCGCY | 1 cut(s) | 315 |
| BfuI | GTATCC | 1 cut(s) | 187 |
| Bme1390I | CCNGG | 4 cut(s) | 511, 512, 550, 551 |
| Bme18I | GGWCC | 1 cut(s) | 555 |
| BmeT110I | CYCGRG | 2 cut(s) | 510, 549 |
| BmgBI | CACGTC | 1 cut(s) | 346 |
| BmgT120I | GGNCC | 3 cut(s) | 276, 277, 555 |
| BmiI | GGNNCC | 5 cut(s) | 277, 278, 313, 406, 556 |
| BmrFI | CCNGG | 4 cut(s) | 511, 512, 550, 551 |
| BmrI | ACTGGG | 1 cut(s) | 463 |
| BmuI | ACTGGG | 1 cut(s) | 463 |
| BpmI | CTGGAG | 1 cut(s) | 74 |
| Bpu10I | CCTNAGC | 2 cut(s) | 93, 412 |
| BpuEI | CTTGAG | 1 cut(s) | 199 |
| BpuMI | CCSGG | 4 cut(s) | 511, 512, 550, 551 |
| BsaHI | GRCGYC | 1 cut(s) | 312 |
| BsaJI | CCNNGG | 4 cut(s) | 201, 510, 549, 550 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 29, 59, 349, 379 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 76, 180, 181, 401, 446, 475 |
| Bse118I | RCCGGY | 3 cut(s) | 352, 439, 488 |
| Bse1I | ACTGG | 1 cut(s) | 469 |
| BseDI | CCNNGG | 4 cut(s) | 201, 510, 549, 550 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 76, 180, 181, 401, 446, 475 |
| BseMII | CTCAG | 2 cut(s) | 135, 426 |
| BseNI | ACTGG | 1 cut(s) | 469 |
| BsePI | GCGCGC | 1 cut(s) | 484 |
| BseSI | GKGCMC | 2 cut(s) | 280, 409 |
| BseX3I | CGGCCG | 1 cut(s) | 204 |
| BseXI | GCAGC | 4 cut(s) | 130, 163, 196, 466 |
| BseYI | CCCAGC | 3 cut(s) | 48, 272, 336 |
| BsgI | GTGCAG | 2 cut(s) | 137, 170 |
| Bsh1236I | CGCG | 4 cut(s) | 203, 484, 486, 573 |
| Bsh1285I | CGRYCG | 3 cut(s) | 40, 207, 440 |
| BshFI | GGCC | 2 cut(s) | 206, 278 |
| BshNI | GGYRCC | 2 cut(s) | 311, 404 |
| BsiEI | CGRYCG | 3 cut(s) | 40, 207, 440 |
| BsiHKAI | GWGCWC | 1 cut(s) | 367 |
| BsiHKCI | CYCGRG | 2 cut(s) | 510, 549 |
| BsiSI | CCGG | 6 cut(s) | 353, 371, 440, 489, 511, 550 |
| BsiWI | CGTACG | 1 cut(s) | 433 |
| BslFI | GGGAC | 2 cut(s) | 35, 319 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 76, 180, 181, 401, 446, 475 |
| BsmAI | GTCTC | 1 cut(s) | 49 |
| BsmFI | GGGAC | 2 cut(s) | 35, 319 |
| BsmI | GAATGC | 1 cut(s) | 221 |
| BsnI | GGCC | 2 cut(s) | 206, 278 |
| BsoBI | CYCGRG | 2 cut(s) | 510, 549 |
| Bsp120I | GGGCCC | 1 cut(s) | 276 |
| Bsp1286I | GDGCHC | 3 cut(s) | 280, 367, 409 |
| Bsp143I | GATC | 2 cut(s) | 449, 559 |
| BspANI | GGCC | 2 cut(s) | 206, 278 |
| BspCNI | CTCAG | 2 cut(s) | 136, 425 |
| BspFNI | CGCG | 4 cut(s) | 203, 484, 486, 573 |
| BspLI | GGNNCC | 5 cut(s) | 277, 278, 313, 406, 556 |
| BspPI | GGATC | 1 cut(s) | 457 |
| BspT107I | GGYRCC | 2 cut(s) | 311, 404 |
| BsrBI | CCGCTC | 3 cut(s) | 19, 82, 411 |
| BsrFI | RCCGGY | 3 cut(s) | 352, 439, 488 |
| BsrI | ACTGG | 1 cut(s) | 469 |
| BssAI | RCCGGY | 3 cut(s) | 352, 439, 488 |
| BssECI | CCNNGG | 4 cut(s) | 201, 510, 549, 550 |
| BssHII | GCGCGC | 1 cut(s) | 484 |
| BssMI | GATC | 2 cut(s) | 449, 559 |
| BssNI | GRCGYC | 1 cut(s) | 312 |
| Bst4CI | ACNGT | 2 cut(s) | 7, 41 |
| BstACI | GRCGYC | 1 cut(s) | 312 |
| BstC8I | GCNNGC | 6 cut(s) | 175, 354, 409, 486, 490, 591 |
| BstDEI | CTNAG | 3 cut(s) | 93, 144, 412 |
| BstDSI | CCRYGG | 1 cut(s) | 201 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 74 |
| BstFNI | CGCG | 4 cut(s) | 203, 484, 486, 573 |
| BstH2I | RGCGCY | 1 cut(s) | 315 |
| BstHHI | GCGC | 5 cut(s) | 314, 486, 488, 505, 575 |
| BstKTI | GATC | 2 cut(s) | 452, 562 |
| BstMAI | GTCTC | 1 cut(s) | 49 |
| BstMBI | GATC | 2 cut(s) | 449, 559 |
| BstMCI | CGRYCG | 3 cut(s) | 40, 207, 440 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 79, 206, 209, 218, 346, 362, 404 |
| BstNSI | RCATGY | 2 cut(s) | 298, 593 |
| BstSCI | CCNGG | 4 cut(s) | 509, 510, 548, 549 |
| BstSFI | CTRYAG | 1 cut(s) | 74 |
| BstSLI | GKGCMC | 2 cut(s) | 280, 409 |
| BstUI | CGCG | 4 cut(s) | 203, 484, 486, 573 |
| BstV1I | GCAGC | 4 cut(s) | 130, 163, 196, 466 |
| BstZI | CGGCCG | 1 cut(s) | 204 |
| BsuI | GTATCC | 1 cut(s) | 187 |
| BsuRI | GGCC | 2 cut(s) | 206, 278 |
| BtgI | CCRYGG | 1 cut(s) | 201 |
| BtgZI | GCGATG | 1 cut(s) | 49 |
| BtrI | CACGTC | 1 cut(s) | 346 |
| Cac8I | GCNNGC | 6 cut(s) | 175, 354, 409, 486, 490, 591 |
| CciNI | GCGGCCGC | 1 cut(s) | 204 |
| CfoI | GCGC | 5 cut(s) | 314, 486, 488, 505, 575 |
| Cfr10I | RCCGGY | 3 cut(s) | 352, 439, 488 |
| Cfr13I | GGNCC | 3 cut(s) | 276, 277, 555 |
| Cfr42I | CCGCGG | 1 cut(s) | 204 |
| Cfr9I | CCCGGG | 2 cut(s) | 510, 549 |
| CseI | GACGC | 1 cut(s) | 321 |
| Csp6I | GTAC | 2 cut(s) | 241, 434 |
| CviAII | CATG | 2 cut(s) | 295, 590 |
| CviQI | GTAC | 2 cut(s) | 241, 434 |
| DdeI | CTNAG | 3 cut(s) | 93, 144, 412 |
| DinI | GGCGCC | 1 cut(s) | 313 |
| DpnI | GATC | 2 cut(s) | 451, 561 |
| DpnII | GATC | 2 cut(s) | 449, 559 |
| EaeI | YGGCCR | 1 cut(s) | 204 |
| EagI | CGGCCG | 1 cut(s) | 204 |
| EciI | GGCGGA | 4 cut(s) | 251, 357, 458, 530 |
| EclXI | CGGCCG | 1 cut(s) | 204 |
| Eco24I | GRGCYC | 1 cut(s) | 280 |
| Eco47I | GGWCC | 1 cut(s) | 555 |
| Eco52I | CGGCCG | 1 cut(s) | 204 |
| Eco57I | CTGAAG | 3 cut(s) | 207, 320, 615 |
| Eco88I | CYCGRG | 2 cut(s) | 510, 549 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 74 |
| EcoO109I | RGGNCCY | 2 cut(s) | 276, 277 |
| EcoT38I | GRGCYC | 1 cut(s) | 280 |
| EgeI | GGCGCC | 1 cut(s) | 313 |
| EheI | GGCGCC | 1 cut(s) | 313 |
| FaeI | CATG | 2 cut(s) | 298, 593 |
| FaiI | YATR | 4 cut(s) | 290, 296, 524, 591 |
| FaqI | GGGAC | 2 cut(s) | 35, 319 |
| FatI | CATG | 2 cut(s) | 294, 589 |
| FauI | CCCGC | 5 cut(s) | 12, 114, 182, 403, 416 |
| FriOI | GRGCYC | 1 cut(s) | 280 |
| FspBI | CTAG | 3 cut(s) | 158, 281, 537 |
| GlaI | GCGC | 5 cut(s) | 313, 485, 487, 504, 574 |
| GsaI | CCCAGC | 3 cut(s) | 52, 276, 340 |
| GsuI | CTGGAG | 1 cut(s) | 74 |
| HaeII | RGCGCY | 1 cut(s) | 315 |
| HaeIII | GGCC | 2 cut(s) | 206, 278 |
| HapII | CCGG | 6 cut(s) | 353, 371, 440, 489, 511, 550 |
| HgaI | GACGC | 1 cut(s) | 321 |
| HhaI | GCGC | 5 cut(s) | 314, 486, 488, 505, 575 |
| Hin1I | GRCGYC | 1 cut(s) | 312 |
| Hin1II | CATG | 2 cut(s) | 298, 593 |
| Hin6I | GCGC | 5 cut(s) | 312, 484, 486, 503, 573 |
| HinP1I | GCGC | 5 cut(s) | 312, 484, 486, 503, 573 |
| HinfI | GANTC | 3 cut(s) | 125, 260, 460 |
| HpaII | CCGG | 6 cut(s) | 353, 371, 440, 489, 511, 550 |
| Hpy188I | TCNGA | 3 cut(s) | 255, 475, 559 |
| Hpy188III | TCNNGA | 1 cut(s) | 325 |
| Hpy99I | CGWCG | 1 cut(s) | 347 |
| HpyAV | CCTTC | 4 cut(s) | 182, 262, 395, 440 |
| HpyCH4III | ACNGT | 2 cut(s) | 7, 41 |
| HpyCH4IV | ACGT | 1 cut(s) | 345 |
| HpyCH4V | TGCA | 2 cut(s) | 118, 151 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 79, 206, 209, 218, 346, 362, 404 |
| HpyF3I | CTNAG | 3 cut(s) | 93, 144, 412 |
| HpySE526I | ACGT | 1 cut(s) | 345 |
| Hsp92I | GRCGYC | 1 cut(s) | 312 |
| Hsp92II | CATG | 2 cut(s) | 298, 593 |
| HspAI | GCGC | 5 cut(s) | 312, 484, 486, 503, 573 |
| KasI | GGCGCC | 1 cut(s) | 311 |
| KroI | GCCGGC | 2 cut(s) | 352, 488 |
| KroNI | GCCGGC | 2 cut(s) | 354, 490 |
| KspI | CCGCGG | 1 cut(s) | 204 |
| Kzo9I | GATC | 2 cut(s) | 449, 559 |
| LmnI | GCTCC | 3 cut(s) | 55, 79, 370 |
| Lsp1109I | GCAGC | 4 cut(s) | 130, 163, 196, 466 |
| MaeI | CTAG | 3 cut(s) | 158, 281, 537 |
| MaeII | ACGT | 1 cut(s) | 345 |
| MaeIII | GTNAC | 1 cut(s) | 416 |
| MalI | GATC | 2 cut(s) | 451, 561 |
| MbiI | CCGCTC | 3 cut(s) | 19, 82, 411 |
| MboI | GATC | 2 cut(s) | 449, 559 |
| MboII | GAAGA | 1 cut(s) | 614 |
| MhlI | GDGCHC | 3 cut(s) | 280, 367, 409 |
| Mly113I | GGCGCC | 1 cut(s) | 312 |
| MlyI | GAGTC | 3 cut(s) | 134, 269, 454 |
| MmeI | TCCRAC | 1 cut(s) | 453 |
| MnlI | CCTC | 6 cut(s) | 24, 139, 154, 174, 469, 604 |
| MroNI | GCCGGC | 2 cut(s) | 352, 488 |
| MslI | CAYNNNNRTG | 2 cut(s) | 113, 293 |
| MspA1I | CMGCKG | 5 cut(s) | 52, 121, 154, 203, 209 |
| MspI | CCGG | 6 cut(s) | 353, 371, 440, 489, 511, 550 |
| MspR9I | CCNGG | 4 cut(s) | 511, 512, 550, 551 |
| Mva1269I | GAATGC | 1 cut(s) | 221 |
| MvnI | CGCG | 4 cut(s) | 203, 484, 486, 573 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 79, 206, 209, 218, 346, 362, 404 |
| NaeI | GCCGGC | 2 cut(s) | 354, 490 |
| NarI | GGCGCC | 1 cut(s) | 312 |
| NciI | CCSGG | 4 cut(s) | 511, 512, 550, 551 |
| NdeII | GATC | 2 cut(s) | 449, 559 |
| NgoMIV | GCCGGC | 2 cut(s) | 352, 488 |
| NlaIII | CATG | 2 cut(s) | 298, 593 |
| NlaIV | GGNNCC | 5 cut(s) | 277, 278, 313, 406, 556 |
| NotI | GCGGCCGC | 1 cut(s) | 204 |
| NspI | RCATGY | 2 cut(s) | 298, 593 |
| PaeI | GCATGC | 1 cut(s) | 593 |
| PauI | GCGCGC | 1 cut(s) | 484 |
| PctI | GAATGC | 1 cut(s) | 221 |
| PdiI | GCCGGC | 2 cut(s) | 354, 490 |
| Pfl23II | CGTACG | 1 cut(s) | 433 |
| PflFI | GACNNNGTC | 2 cut(s) | 41, 259 |
| PleI | GAGTC | 3 cut(s) | 133, 268, 454 |
| PluTI | GGCGCC | 1 cut(s) | 315 |
| PpsI | GAGTC | 3 cut(s) | 133, 268, 454 |
| PspFI | CCCAGC | 3 cut(s) | 48, 272, 336 |
| PspLI | CGTACG | 1 cut(s) | 433 |
| PspN4I | GGNNCC | 5 cut(s) | 277, 278, 313, 406, 556 |
| PspOMI | GGGCCC | 1 cut(s) | 276 |
| PspPI | GGNCC | 3 cut(s) | 276, 277, 555 |
| PsyI | GACNNNGTC | 2 cut(s) | 41, 259 |
| PteI | GCGCGC | 1 cut(s) | 484 |
| PvuII | CAGCTG | 1 cut(s) | 52 |
| RsaI | GTAC | 2 cut(s) | 242, 435 |
| RsaNI | GTAC | 2 cut(s) | 241, 434 |
| RseI | CAYNNNNRTG | 2 cut(s) | 113, 293 |
| SacII | CCGCGG | 1 cut(s) | 204 |
| Sau3AI | GATC | 2 cut(s) | 449, 559 |
| Sau96I | GGNCC | 3 cut(s) | 276, 277, 555 |
| SchI | GAGTC | 3 cut(s) | 134, 269, 454 |
| ScrFI | CCNGG | 4 cut(s) | 511, 512, 550, 551 |
| SduI | GDGCHC | 3 cut(s) | 280, 367, 409 |
| SetI | ASST | 8 cut(s) | 54, 108, 150, 171, 348, 406, 418, 480 |
| SfcI | CTRYAG | 1 cut(s) | 74 |
| SfoI | GGCGCC | 1 cut(s) | 313 |
| Sfr303I | CCGCGG | 1 cut(s) | 204 |
| SgrBI | CCGCGG | 1 cut(s) | 204 |
| SinI | GGWCC | 1 cut(s) | 555 |
| SmaI | CCCGGG | 2 cut(s) | 512, 551 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 113, 293 |
| SmlI | CTYRAG | 1 cut(s) | 178 |
| SmoI | CTYRAG | 1 cut(s) | 178 |
| SphI | GCATGC | 1 cut(s) | 593 |
| SspDI | GGCGCC | 1 cut(s) | 311 |
| SspMI | CTAG | 3 cut(s) | 158, 281, 537 |
| StyD4I | CCNGG | 4 cut(s) | 509, 510, 548, 549 |
| TaaI | ACNGT | 2 cut(s) | 7, 41 |
| TaiI | ACGT | 1 cut(s) | 348 |
| TaqI | TCGA | 1 cut(s) | 609 |
| TaqII | GACCGA | 1 cut(s) | 272 |
| TatI | WGTACW | 1 cut(s) | 240 |
| TseI | GCWGC | 4 cut(s) | 118, 151, 209, 454 |
| TspGWI | ACGGA | 1 cut(s) | 435 |
| TspMI | CCCGGG | 2 cut(s) | 510, 549 |
| Tth111I | GACNNNGTC | 2 cut(s) | 41, 259 |
| VpaK11BI | GGWCC | 1 cut(s) | 555 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 74 |
| XceI | RCATGY | 2 cut(s) | 298, 593 |
| XmaI | CCCGGG | 2 cut(s) | 510, 549 |
| XspI | CTAG | 3 cut(s) | 158, 281, 537 |