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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 242 |
| AccB1I | GGYRCC | 2 cut(s) | 172, 242 |
| AccI | GTMKAC | 1 cut(s) | 87 |
| AccII | CGCG | 1 cut(s) | 150 |
| AciI | CCGC | 6 cut(s) | 20, 44, 59, 138, 200, 331 |
| AclWI | GGATC | 1 cut(s) | 35 |
| AcuI | CTGAAG | 1 cut(s) | 245 |
| AfaI | GTAC | 2 cut(s) | 5, 244 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 144 |
| AgsI | TTSAA | 1 cut(s) | 293 |
| AjnI | CCWGG | 1 cut(s) | 143 |
| AluBI | AGCT | 2 cut(s) | 65, 121 |
| AluI | AGCT | 2 cut(s) | 65, 121 |
| Alw26I | GTCTC | 2 cut(s) | 203, 311 |
| AlwI | GGATC | 1 cut(s) | 35 |
| AoxI | GGCC | 3 cut(s) | 99, 227, 354 |
| ApeKI | GCWGC | 5 cut(s) | 56, 71, 107, 118, 236 |
| Asp718I | GGTACC | 1 cut(s) | 242 |
| AspLEI | GCGC | 3 cut(s) | 112, 136, 150 |
| AspS9I | GGNCC | 2 cut(s) | 100, 355 |
| BaeGI | GKGCMC | 2 cut(s) | 156, 177 |
| BanI | GGYRCC | 2 cut(s) | 172, 242 |
| BanII | GRGCYC | 1 cut(s) | 331 |
| BbsI | GAAGAC | 1 cut(s) | 312 |
| BbvCI | CCTCAGC | 1 cut(s) | 122 |
| BbvI | GCAGC | 5 cut(s) | 43, 58, 94, 130, 223 |
| BccI | CCATC | 1 cut(s) | 329 |
| BciT130I | CCWGG | 1 cut(s) | 145 |
| BcoDI | GTCTC | 2 cut(s) | 203, 311 |
| BfaI | CTAG | 1 cut(s) | 66 |
| BfoI | RGCGCY | 1 cut(s) | 137 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 80 |
| BisI | GCNGC | 6 cut(s) | 21, 57, 72, 108, 119, 237 |
| BlpI | GCTNAGC | 1 cut(s) | 24 |
| BlsI | GCNGC | 6 cut(s) | 22, 58, 73, 109, 120, 238 |
| Bme1390I | CCNGG | 1 cut(s) | 145 |
| BmgT120I | GGNCC | 2 cut(s) | 100, 355 |
| BmiI | GGNNCC | 5 cut(s) | 102, 174, 186, 244, 328 |
| BmrFI | CCNGG | 1 cut(s) | 145 |
| BmsI | GCATC | 1 cut(s) | 207 |
| BoxI | GACNNNNGTC | 1 cut(s) | 35 |
| BpiI | GAAGAC | 1 cut(s) | 312 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| Bpu10I | CCTNAGC | 1 cut(s) | 122 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 24 |
| BsaI | GGTCTC | 1 cut(s) | 311 |
| BsaJI | CCNNGG | 2 cut(s) | 76, 180 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 144 |
| Bse1I | ACTGG | 1 cut(s) | 188 |
| BseBI | CCWGG | 1 cut(s) | 145 |
| BseDI | CCNNGG | 2 cut(s) | 76, 180 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 144 |
| BseMII | CTCAG | 2 cut(s) | 38, 113 |
| BseNI | ACTGG | 1 cut(s) | 188 |
| BseRI | GAGGAG | 1 cut(s) | 314 |
| BseSI | GKGCMC | 2 cut(s) | 156, 177 |
| BseXI | GCAGC | 5 cut(s) | 43, 58, 94, 130, 223 |
| BsgI | GTGCAG | 1 cut(s) | 137 |
| Bsh1236I | CGCG | 1 cut(s) | 150 |
| BshFI | GGCC | 3 cut(s) | 101, 229, 356 |
| BshNI | GGYRCC | 2 cut(s) | 172, 242 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 144 |
| BsmAI | GTCTC | 2 cut(s) | 203, 311 |
| BsmBI | CGTCTC | 1 cut(s) | 203 |
| BsnI | GGCC | 3 cut(s) | 101, 229, 356 |
| Bso31I | GGTCTC | 1 cut(s) | 311 |
| Bsp1286I | GDGCHC | 3 cut(s) | 156, 177, 331 |
| Bsp143I | GATC | 1 cut(s) | 40 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 24 |
| BspACI | CCGC | 6 cut(s) | 20, 44, 59, 138, 200, 331 |
| BspANI | GGCC | 3 cut(s) | 101, 229, 356 |
| BspCNI | CTCAG | 2 cut(s) | 37, 114 |
| BspFNI | CGCG | 1 cut(s) | 150 |
| BspLI | GGNNCC | 5 cut(s) | 102, 174, 186, 244, 328 |
| BspPI | GGATC | 1 cut(s) | 35 |
| BspT107I | GGYRCC | 2 cut(s) | 172, 242 |
| BspTNI | GGTCTC | 1 cut(s) | 311 |
| BsrI | ACTGG | 1 cut(s) | 188 |
| BssECI | CCNNGG | 2 cut(s) | 76, 180 |
| BssMI | GATC | 1 cut(s) | 40 |
| BssT1I | CCWWGG | 2 cut(s) | 76, 180 |
| Bst2UI | CCWGG | 1 cut(s) | 145 |
| Bst4CI | ACNGT | 1 cut(s) | 256 |
| Bst6I | CTCTTC | 2 cut(s) | 291, 335 |
| BstC8I | GCNNGC | 6 cut(s) | 18, 138, 152, 331, 335, 354 |
| BstDEI | CTNAG | 2 cut(s) | 24, 122 |
| BstFNI | CGCG | 1 cut(s) | 150 |
| BstH2I | RGCGCY | 1 cut(s) | 137 |
| BstHHI | GCGC | 3 cut(s) | 112, 136, 150 |
| BstKTI | GATC | 1 cut(s) | 43 |
| BstMAI | GTCTC | 2 cut(s) | 203, 311 |
| BstMBI | GATC | 1 cut(s) | 40 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 62, 71, 80, 107, 118, 211, 226, 353 |
| BstNI | CCWGG | 1 cut(s) | 145 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 35 |
| BstSCI | CCNGG | 1 cut(s) | 143 |
| BstSLI | GKGCMC | 2 cut(s) | 156, 177 |
| BstUI | CGCG | 1 cut(s) | 150 |
| BstV1I | GCAGC | 5 cut(s) | 43, 58, 94, 130, 223 |
| BstV2I | GAAGAC | 1 cut(s) | 312 |
| BsuRI | GGCC | 3 cut(s) | 101, 229, 356 |
| BtsIMutI | CAGTG | 1 cut(s) | 195 |
| Cac8I | GCNNGC | 6 cut(s) | 18, 138, 152, 331, 335, 354 |
| CfoI | GCGC | 3 cut(s) | 112, 136, 150 |
| Cfr13I | GGNCC | 2 cut(s) | 100, 355 |
| CseI | GACGC | 1 cut(s) | 220 |
| Csp6I | GTAC | 2 cut(s) | 4, 243 |
| CviJI | RGCY | 9 cut(s) | 16, 23, 65, 101, 121, 205, 229, 329, 356 |
| CviKI_1 | RGCY | 9 cut(s) | 16, 23, 65, 101, 121, 205, 229, 329, 356 |
| CviQI | GTAC | 2 cut(s) | 4, 243 |
| DdeI | CTNAG | 2 cut(s) | 24, 122 |
| DpnI | GATC | 1 cut(s) | 42 |
| DpnII | GATC | 1 cut(s) | 40 |
| Eam1104I | CTCTTC | 2 cut(s) | 291, 335 |
| EarI | CTCTTC | 2 cut(s) | 291, 335 |
| Eco130I | CCWWGG | 2 cut(s) | 76, 180 |
| Eco147I | AGGCCT | 1 cut(s) | 229 |
| Eco24I | GRGCYC | 1 cut(s) | 331 |
| Eco31I | GGTCTC | 1 cut(s) | 311 |
| Eco57I | CTGAAG | 1 cut(s) | 245 |
| EcoO109I | RGGNCCY | 2 cut(s) | 100, 355 |
| EcoRII | CCWGG | 1 cut(s) | 143 |
| EcoT14I | CCWWGG | 2 cut(s) | 76, 180 |
| EcoT38I | GRGCYC | 1 cut(s) | 331 |
| ErhI | CCWWGG | 2 cut(s) | 76, 180 |
| Esp3I | CGTCTC | 1 cut(s) | 203 |
| FauI | CCCGC | 4 cut(s) | 52, 145, 193, 338 |
| FblI | GTMKAC | 1 cut(s) | 87 |
| Fnu4HI | GCNGC | 6 cut(s) | 21, 57, 72, 108, 119, 237 |
| FriOI | GRGCYC | 1 cut(s) | 331 |
| Fsp4HI | GCNGC | 6 cut(s) | 21, 57, 72, 108, 119, 237 |
| FspBI | CTAG | 1 cut(s) | 66 |
| GlaI | GCGC | 3 cut(s) | 111, 135, 149 |
| GluI | GCNGC | 6 cut(s) | 21, 57, 72, 108, 119, 237 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeII | RGCGCY | 1 cut(s) | 137 |
| HaeIII | GGCC | 3 cut(s) | 101, 229, 356 |
| HgaI | GACGC | 1 cut(s) | 220 |
| HhaI | GCGC | 3 cut(s) | 112, 136, 150 |
| Hin6I | GCGC | 3 cut(s) | 110, 134, 148 |
| HinP1I | GCGC | 3 cut(s) | 110, 134, 148 |
| HincII | GTYRAC | 1 cut(s) | 88 |
| HindII | GTYRAC | 1 cut(s) | 88 |
| Hpy166II | GTNNAC | 1 cut(s) | 88 |
| Hpy188I | TCNGA | 4 cut(s) | 252, 264, 326, 362 |
| Hpy8I | GTNNAC | 1 cut(s) | 88 |
| Hpy99I | CGWCG | 1 cut(s) | 92 |
| HpyAV | CCTTC | 3 cut(s) | 28, 154, 259 |
| HpyCH4III | ACNGT | 1 cut(s) | 256 |
| HpyCH4V | TGCA | 2 cut(s) | 118, 220 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 62, 71, 80, 107, 118, 211, 226, 353 |
| HpyF3I | CTNAG | 2 cut(s) | 24, 122 |
| HspAI | GCGC | 3 cut(s) | 110, 134, 148 |
| KpnI | GGTACC | 1 cut(s) | 246 |
| Kzo9I | GATC | 1 cut(s) | 40 |
| LmnI | GCTCC | 3 cut(s) | 62, 93, 326 |
| Lsp1109I | GCAGC | 5 cut(s) | 43, 58, 94, 130, 223 |
| LweI | GCATC | 1 cut(s) | 207 |
| MaeI | CTAG | 1 cut(s) | 66 |
| MaeIII | GTNAC | 1 cut(s) | 190 |
| MalI | GATC | 1 cut(s) | 42 |
| MboI | GATC | 1 cut(s) | 40 |
| MboII | GAAGA | 5 cut(s) | 251, 305, 308, 317, 352 |
| MfeI | CAATTG | 1 cut(s) | 221 |
| MhlI | GDGCHC | 3 cut(s) | 156, 177, 331 |
| MluCI | AATT | 1 cut(s) | 221 |
| MnlI | CCTC | 9 cut(s) | 117, 159, 187, 219, 264, 292, 295, 304, 336 |
| MspA1I | CMGCKG | 1 cut(s) | 121 |
| MspR9I | CCNGG | 1 cut(s) | 145 |
| MunI | CAATTG | 1 cut(s) | 221 |
| MvaI | CCWGG | 1 cut(s) | 145 |
| MvnI | CGCG | 1 cut(s) | 150 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 62, 71, 80, 107, 118, 211, 226, 353 |
| NdeII | GATC | 1 cut(s) | 40 |
| NlaIV | GGNNCC | 5 cut(s) | 102, 174, 186, 244, 328 |
| NmuCI | GTSAC | 1 cut(s) | 190 |
| PceI | AGGCCT | 1 cut(s) | 229 |
| PkrI | GCNGC | 6 cut(s) | 22, 58, 73, 109, 120, 238 |
| PshAI | GACNNNNGTC | 1 cut(s) | 35 |
| Psp6I | CCWGG | 1 cut(s) | 143 |
| PspGI | CCWGG | 1 cut(s) | 143 |
| PspN4I | GGNNCC | 5 cut(s) | 102, 174, 186, 244, 328 |
| PspPI | GGNCC | 2 cut(s) | 100, 355 |
| PvuII | CAGCTG | 1 cut(s) | 121 |
| RsaI | GTAC | 2 cut(s) | 5, 244 |
| RsaNI | GTAC | 2 cut(s) | 4, 243 |
| SalI | GTCGAC | 1 cut(s) | 86 |
| SatI | GCNGC | 6 cut(s) | 21, 57, 72, 108, 119, 237 |
| Sau3AI | GATC | 1 cut(s) | 40 |
| Sau96I | GGNCC | 2 cut(s) | 100, 355 |
| ScrFI | CCNGG | 1 cut(s) | 145 |
| SduI | GDGCHC | 3 cut(s) | 156, 177, 331 |
| SetI | ASST | 3 cut(s) | 39, 67, 123 |
| SfaNI | GCATC | 1 cut(s) | 207 |
| Sse9I | AATT | 1 cut(s) | 221 |
| SseBI | AGGCCT | 1 cut(s) | 229 |
| SsiI | CCGC | 6 cut(s) | 20, 44, 59, 138, 200, 331 |
| SspMI | CTAG | 1 cut(s) | 66 |
| StuI | AGGCCT | 1 cut(s) | 229 |
| StyD4I | CCNGG | 1 cut(s) | 143 |
| StyI | CCWWGG | 2 cut(s) | 76, 180 |
| TaaI | ACNGT | 1 cut(s) | 256 |
| TaqI | TCGA | 2 cut(s) | 39, 87 |
| TasI | AATT | 1 cut(s) | 221 |
| TauI | GCSGC | 1 cut(s) | 23 |
| TscAI | CASTG | 1 cut(s) | 195 |
| TseFI | GTSAC | 1 cut(s) | 190 |
| TseI | GCWGC | 5 cut(s) | 56, 71, 107, 118, 236 |
| Tsp45I | GTSAC | 1 cut(s) | 190 |
| TspRI | CASTG | 1 cut(s) | 195 |
| XmiI | GTMKAC | 1 cut(s) | 87 |
| XspI | CTAG | 1 cut(s) | 66 |