Putative gypsy type transposon
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 751 |
| AatII | GACGTC | 1 cut(s) | 1577 |
| Acc36I | ACCTGC | 2 cut(s) | 729, 751 |
| AccB1I | GGYRCC | 8 cut(s) | 186, 524, 712, 1369, 1390, 1989, 2243, 2279 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 777, 2289 |
| AccBSI | CCGCTC | 4 cut(s) | 1632, 1846, 1987, 2427 |
| AccI | GTMKAC | 2 cut(s) | 106, 1745 |
| AccII | CGCG | 9 cut(s) | 132, 668, 1014, 1108, 1221, 1386, 1433, 2060, 2171 |
| AccIII | TCCGGA | 1 cut(s) | 93 |
| AclI | AACGTT | 1 cut(s) | 1778 |
| AclWI | GGATC | 1 cut(s) | 721 |
| AcoI | YGGCCR | 1 cut(s) | 1977 |
| AcuI | CTGAAG | 5 cut(s) | 599, 1478, 1753, 2069, 2481 |
| AcvI | CACGTG | 2 cut(s) | 246, 389 |
| AcyI | GRCGYC | 5 cut(s) | 1370, 1574, 1823, 2280, 2315 |
| AdeI | CACNNNGTG | 1 cut(s) | 1077 |
| AfaI | GTAC | 8 cut(s) | 393, 849, 872, 986, 1124, 1319, 1483, 2210 |
| AfeI | AGCGCT | 1 cut(s) | 1505 |
| AflIII | ACRYGT | 6 cut(s) | 243, 386, 388, 774, 1106, 2031 |
| AgsI | TTSAA | 5 cut(s) | 645, 1231, 1607, 2078, 2186 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 225, 958, 2391 |
| AhlI | ACTAGT | 1 cut(s) | 409 |
| AjnI | CCWGG | 4 cut(s) | 918, 1815, 1896, 1992 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1671, 1703 |
| AluBI | AGCT | 9 cut(s) | 127, 378, 613, 641, 934, 1084, 1852, 1906, 1969 |
| AluI | AGCT | 9 cut(s) | 127, 378, 613, 641, 934, 1084, 1852, 1906, 1969 |
| Alw21I | GWGCWC | 1 cut(s) | 675 |
| Alw26I | GTCTC | 4 cut(s) | 288, 1070, 1187, 2378 |
| Alw44I | GTGCAC | 1 cut(s) | 671 |
| AlwI | GGATC | 1 cut(s) | 721 |
| Ama87I | CYCGRG | 3 cut(s) | 1592, 2364, 2403 |
| Aor13HI | TCCGGA | 1 cut(s) | 93 |
| Aor51HI | AGCGCT | 1 cut(s) | 1505 |
| ApaI | GGGCCC | 1 cut(s) | 44 |
| ApaLI | GTGCAC | 1 cut(s) | 671 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1492, 1524 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2082 |
| AsuC2I | CCSGG | 6 cut(s) | 600, 1075, 1203, 2051, 2365, 2366 |
| AsuHPI | GGTGA | 8 cut(s) | 251, 619, 1063, 1312, 1688, 1688, 2065, 2144 |
| AvaI | CYCGRG | 3 cut(s) | 1592, 2364, 2403 |
| AvaII | GGWCC | 6 cut(s) | 88, 830, 1243, 1329, 1489, 2047 |
| AxyI | CCTNAGG | 1 cut(s) | 947 |
| BaeGI | GKGCMC | 6 cut(s) | 44, 191, 675, 717, 770, 2221 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1473, 1506 |
| BalI | TGGCCA | 1 cut(s) | 1979 |
| BanI | GGYRCC | 8 cut(s) | 186, 524, 712, 1369, 1390, 1989, 2243, 2279 |
| BanII | GRGCYC | 1 cut(s) | 44 |
| BauI | CACGAG | 2 cut(s) | 674, 1805 |
| BbrPI | CACGTG | 2 cut(s) | 246, 389 |
| BbsI | GAAGAC | 4 cut(s) | 293, 427, 1011, 1577 |
| Bbv12I | GWGCWC | 1 cut(s) | 675 |
| BbvCI | CCTCAGC | 2 cut(s) | 1853, 2154 |
| BccI | CCATC | 6 cut(s) | 91, 320, 1257, 1297, 2366, 2439 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1928, 1962 |
| BciT130I | CCWGG | 4 cut(s) | 920, 1817, 1898, 1994 |
| BciVI | GTATCC | 1 cut(s) | 487 |
| BcnI | CCSGG | 6 cut(s) | 600, 1075, 1203, 2051, 2365, 2366 |
| BcoDI | GTCTC | 4 cut(s) | 288, 1070, 1187, 2378 |
| BcuI | ACTAGT | 1 cut(s) | 409 |
| BfaI | CTAG | 5 cut(s) | 77, 294, 410, 444, 2126 |
| BfmI | CTRYAG | 5 cut(s) | 373, 722, 1614, 1874, 2267 |
| BfoI | RGCGCY | 6 cut(s) | 797, 883, 929, 1373, 1507, 2283 |
| BfuAI | ACCTGC | 2 cut(s) | 729, 751 |
| BfuI | GTATCC | 1 cut(s) | 487 |
| BlpI | GCTNAGC | 1 cut(s) | 161 |
| BmcAI | AGTACT | 1 cut(s) | 1124 |
| Bme18I | GGWCC | 6 cut(s) | 88, 830, 1243, 1329, 1489, 2047 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 225, 958, 2391 |
| BmeT110I | CYCGRG | 3 cut(s) | 1592, 2364, 2403 |
| BmrI | ACTGGG | 5 cut(s) | 1560, 1721, 2299, 2352, 2385 |
| BmsI | GCATC | 7 cut(s) | 337, 756, 1032, 1936, 2253, 2295, 2446 |
| BmuI | ACTGGG | 5 cut(s) | 1560, 1721, 2299, 2352, 2385 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1751 |
| BpiI | GAAGAC | 4 cut(s) | 293, 427, 1011, 1577 |
| BpmI | CTGGAG | 4 cut(s) | 564, 1504, 1748, 2015 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1853, 2154, 2248 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 161 |
| BpuMI | CCSGG | 6 cut(s) | 600, 1075, 1203, 2051, 2365, 2366 |
| BsaAI | YACGTR | 3 cut(s) | 246, 389, 874 |
| BsaHI | GRCGYC | 5 cut(s) | 1370, 1574, 1823, 2280, 2315 |
| BsaI | GGTCTC | 1 cut(s) | 2378 |
| BsaWI | WCCGGW | 2 cut(s) | 93, 591 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2463, 2493 |
| Bse118I | RCCGGY | 6 cut(s) | 573, 652, 1166, 1331, 1372, 2240 |
| Bse1I | ACTGG | 9 cut(s) | 870, 1059, 1521, 1555, 1716, 2294, 2347, 2391, 2448 |
| Bse21I | CCTNAGG | 1 cut(s) | 947 |
| Bse3DI | GCAATG | 1 cut(s) | 1245 |
| BseAI | TCCGGA | 1 cut(s) | 93 |
| BseBI | CCWGG | 4 cut(s) | 920, 1817, 1898, 1994 |
| BseGI | GGATG | 4 cut(s) | 102, 558, 2377, 2431 |
| BseMI | GCAATG | 1 cut(s) | 1245 |
| BseMII | CTCAG | 6 cut(s) | 175, 922, 938, 1844, 2145, 2319 |
| BseNI | ACTGG | 9 cut(s) | 870, 1059, 1521, 1555, 1716, 2294, 2347, 2391, 2448 |
| BseRI | GAGGAG | 6 cut(s) | 276, 647, 1058, 1361, 1547, 1550 |
| BseSI | GKGCMC | 6 cut(s) | 44, 191, 675, 717, 770, 2221 |
| BseYI | CCCAGC | 1 cut(s) | 1475 |
| Bsh1236I | CGCG | 9 cut(s) | 132, 668, 1014, 1108, 1221, 1386, 1433, 2060, 2171 |
| Bsh1285I | CGRYCG | 3 cut(s) | 837, 1745, 1749 |
| BshNI | GGYRCC | 8 cut(s) | 186, 524, 712, 1369, 1390, 1989, 2243, 2279 |
| BsiEI | CGRYCG | 3 cut(s) | 837, 1745, 1749 |
| BsiHKAI | GWGCWC | 1 cut(s) | 675 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1592, 2364, 2403 |
| BslFI | GGGAC | 8 cut(s) | 50, 965, 1342, 1895, 2020, 2060, 2320, 2379 |
| BsmAI | GTCTC | 4 cut(s) | 288, 1070, 1187, 2378 |
| BsmBI | CGTCTC | 2 cut(s) | 288, 1070 |
| BsmFI | GGGAC | 8 cut(s) | 50, 965, 1342, 1895, 2020, 2060, 2320, 2379 |
| Bso31I | GGTCTC | 1 cut(s) | 2378 |
| BsoBI | CYCGRG | 3 cut(s) | 1592, 2364, 2403 |
| Bsp120I | GGGCCC | 1 cut(s) | 40 |
| Bsp1286I | GDGCHC | 6 cut(s) | 44, 191, 675, 717, 770, 2221 |
| Bsp13I | TCCGGA | 1 cut(s) | 93 |
| Bsp1407I | TGTACA | 1 cut(s) | 1317 |
| Bsp143I | GATC | 5 cut(s) | 425, 726, 834, 936, 2115 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 161 |
| BspCNI | CTCAG | 6 cut(s) | 174, 921, 939, 1845, 2146, 2320 |
| BspEI | TCCGGA | 1 cut(s) | 93 |
| BspFNI | CGCG | 9 cut(s) | 132, 668, 1014, 1108, 1221, 1386, 1433, 2060, 2171 |
| BspMAI | CTGCAG | 3 cut(s) | 726, 1878, 2271 |
| BspMI | ACCTGC | 2 cut(s) | 729, 751 |
| BspPI | GGATC | 1 cut(s) | 721 |
| BspT107I | GGYRCC | 8 cut(s) | 186, 524, 712, 1369, 1390, 1989, 2243, 2279 |
| BspTNI | GGTCTC | 1 cut(s) | 2378 |
| BsrBI | CCGCTC | 4 cut(s) | 1632, 1846, 1987, 2427 |
| BsrDI | GCAATG | 1 cut(s) | 1245 |
| BsrFI | RCCGGY | 6 cut(s) | 573, 652, 1166, 1331, 1372, 2240 |
| BsrGI | TGTACA | 1 cut(s) | 1317 |
| BsrI | ACTGG | 9 cut(s) | 870, 1059, 1521, 1555, 1716, 2294, 2347, 2391, 2448 |
| BssAI | RCCGGY | 6 cut(s) | 573, 652, 1166, 1331, 1372, 2240 |
| BssMI | GATC | 5 cut(s) | 425, 726, 834, 936, 2115 |
| BssNI | GRCGYC | 5 cut(s) | 1370, 1574, 1823, 2280, 2315 |
| BssSI | CACGAG | 2 cut(s) | 674, 1805 |
| BssT1I | CCWWGG | 3 cut(s) | 58, 883, 2016 |
| Bst2BI | CACGAG | 2 cut(s) | 674, 1805 |
| Bst2UI | CCWGG | 4 cut(s) | 920, 1817, 1898, 1994 |
| Bst4CI | ACNGT | 7 cut(s) | 111, 235, 374, 475, 628, 1676, 2380 |
| Bst6I | CTCTTC | 2 cut(s) | 359, 1524 |
| BstACI | GRCGYC | 5 cut(s) | 1370, 1574, 1823, 2280, 2315 |
| BstAUI | TGTACA | 1 cut(s) | 1317 |
| BstBAI | YACGTR | 3 cut(s) | 246, 389, 874 |
| BstDEI | CTNAG | 8 cut(s) | 11, 161, 908, 947, 1853, 2154, 2248, 2328 |
| BstDSI | CCRYGG | 3 cut(s) | 666, 1262, 2169 |
| BstEII | GGTNACC | 1 cut(s) | 2053 |
| BstF5I | GGATG | 4 cut(s) | 102, 558, 2377, 2431 |
| BstFNI | CGCG | 9 cut(s) | 132, 668, 1014, 1108, 1221, 1386, 1433, 2060, 2171 |
| BstH2I | RGCGCY | 6 cut(s) | 797, 883, 929, 1373, 1507, 2283 |
| BstKTI | GATC | 5 cut(s) | 428, 729, 837, 939, 2118 |
| BstMAI | GTCTC | 4 cut(s) | 288, 1070, 1187, 2378 |
| BstMBI | GATC | 5 cut(s) | 425, 726, 834, 936, 2115 |
| BstMCI | CGRYCG | 3 cut(s) | 837, 1745, 1749 |
| BstNI | CCWGG | 4 cut(s) | 920, 1817, 1898, 1994 |
| BstNSI | RCATGY | 4 cut(s) | 778, 1144, 1790, 2035 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1751 |
| BstPI | GGTNACC | 1 cut(s) | 2053 |
| BstSFI | CTRYAG | 5 cut(s) | 373, 722, 1614, 1874, 2267 |
| BstSLI | GKGCMC | 6 cut(s) | 44, 191, 675, 717, 770, 2221 |
| BstUI | CGCG | 9 cut(s) | 132, 668, 1014, 1108, 1221, 1386, 1433, 2060, 2171 |
| BstV2I | GAAGAC | 4 cut(s) | 293, 427, 1011, 1577 |
| BstX2I | RGATCY | 1 cut(s) | 726 |
| BstYI | RGATCY | 1 cut(s) | 726 |
| Bsu36I | CCTNAGG | 1 cut(s) | 947 |
| BsuI | GTATCC | 1 cut(s) | 487 |
| BtgI | CCRYGG | 3 cut(s) | 666, 1262, 2169 |
| BtgZI | GCGATG | 2 cut(s) | 360, 733 |
| BtsCI | GGATG | 4 cut(s) | 102, 558, 2377, 2431 |
| BtsI | GCAGTG | 1 cut(s) | 453 |
| BtsIMutI | CAGTG | 8 cut(s) | 240, 453, 471, 1033, 1528, 2219, 2340, 2455 |
| BveI | ACCTGC | 2 cut(s) | 729, 751 |
| Cfr10I | RCCGGY | 6 cut(s) | 573, 652, 1166, 1331, 1372, 2240 |
| Cfr42I | CCGCGG | 2 cut(s) | 669, 2172 |
| Cfr9I | CCCGGG | 1 cut(s) | 2364 |
| CseI | GACGC | 5 cut(s) | 229, 270, 1232, 1812, 2323 |
| Csp6I | GTAC | 8 cut(s) | 392, 848, 871, 985, 1123, 1318, 1482, 2209 |
| CviAII | CATG | 5 cut(s) | 775, 1141, 1275, 1787, 2032 |
| CviQI | GTAC | 8 cut(s) | 392, 848, 871, 985, 1123, 1318, 1482, 2209 |
| DdeI | CTNAG | 8 cut(s) | 11, 161, 908, 947, 1853, 2154, 2248, 2328 |
| DinI | GGCGCC | 2 cut(s) | 1371, 2281 |
| DpnI | GATC | 5 cut(s) | 427, 728, 836, 938, 2117 |
| DpnII | GATC | 5 cut(s) | 425, 726, 834, 936, 2115 |
| DraIII | CACNNNGTG | 1 cut(s) | 1077 |
| DriI | GACNNNNNGTC | 3 cut(s) | 225, 958, 2391 |
| EaeI | YGGCCR | 1 cut(s) | 1977 |
| Eam1104I | CTCTTC | 2 cut(s) | 359, 1524 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 225, 958, 2391 |
| EarI | CTCTTC | 2 cut(s) | 359, 1524 |
| EciI | GGCGGA | 6 cut(s) | 279, 1054, 1578, 2036, 2219, 2384 |
| Eco130I | CCWWGG | 3 cut(s) | 58, 883, 2016 |
| Eco24I | GRGCYC | 1 cut(s) | 44 |
| Eco31I | GGTCTC | 1 cut(s) | 2378 |
| Eco47I | GGWCC | 6 cut(s) | 88, 830, 1243, 1329, 1489, 2047 |
| Eco47III | AGCGCT | 1 cut(s) | 1505 |
| Eco57I | CTGAAG | 5 cut(s) | 599, 1478, 1753, 2069, 2481 |
| Eco72I | CACGTG | 2 cut(s) | 246, 389 |
| Eco81I | CCTNAGG | 1 cut(s) | 947 |
| Eco88I | CYCGRG | 3 cut(s) | 1592, 2364, 2403 |
| Eco91I | GGTNACC | 1 cut(s) | 2053 |
| EcoO109I | RGGNCCY | 3 cut(s) | 41, 1489, 1554 |
| EcoO65I | GGTNACC | 1 cut(s) | 2053 |
| EcoRII | CCWGG | 4 cut(s) | 918, 1815, 1896, 1992 |
| EcoT14I | CCWWGG | 3 cut(s) | 58, 883, 2016 |
| EcoT38I | GRGCYC | 1 cut(s) | 44 |
| EgeI | GGCGCC | 2 cut(s) | 1371, 2281 |
| EheI | GGCGCC | 2 cut(s) | 1371, 2281 |
| ErhI | CCWWGG | 3 cut(s) | 58, 883, 2016 |
| Esp3I | CGTCTC | 2 cut(s) | 288, 1070 |
| FaeI | CATG | 5 cut(s) | 778, 1144, 1278, 1790, 2035 |
| FaqI | GGGAC | 8 cut(s) | 50, 965, 1342, 1895, 2020, 2060, 2320, 2379 |
| FatI | CATG | 5 cut(s) | 774, 1140, 1274, 1786, 2031 |
| FblI | GTMKAC | 2 cut(s) | 106, 1745 |
| FokI | GGATG | 4 cut(s) | 109, 565, 2384, 2418 |
| FriOI | GRGCYC | 1 cut(s) | 44 |
| FspBI | CTAG | 5 cut(s) | 77, 294, 410, 444, 2126 |
| GsaI | CCCAGC | 1 cut(s) | 1479 |
| GsuI | CTGGAG | 4 cut(s) | 564, 1504, 1748, 2015 |
| HaeII | RGCGCY | 6 cut(s) | 797, 883, 929, 1373, 1507, 2283 |
| HgaI | GACGC | 5 cut(s) | 229, 270, 1232, 1812, 2323 |
| Hin1I | GRCGYC | 5 cut(s) | 1370, 1574, 1823, 2280, 2315 |
| Hin1II | CATG | 5 cut(s) | 778, 1144, 1278, 1790, 2035 |
| HincII | GTYRAC | 7 cut(s) | 535, 571, 904, 1511, 1746, 1782, 2485 |
| HindII | GTYRAC | 7 cut(s) | 535, 571, 904, 1511, 1746, 1782, 2485 |
| HindIII | AAGCTT | 1 cut(s) | 639 |
| HpaI | GTTAAC | 1 cut(s) | 1782 |
| HphI | GGTGA | 8 cut(s) | 251, 619, 1063, 1312, 1688, 1688, 2065, 2144 |
| Hpy188I | TCNGA | 8 cut(s) | 12, 231, 363, 407, 464, 1254, 2329, 2413 |
| Hpy188III | TCNNGA | 5 cut(s) | 94, 940, 1231, 1578, 1727 |
| Hpy99I | CGWCG | 7 cut(s) | 628, 918, 1226, 1926, 1943, 1946, 2480 |
| HpyCH4III | ACNGT | 7 cut(s) | 111, 235, 374, 475, 628, 1676, 2380 |
| HpyCH4IV | ACGT | 7 cut(s) | 245, 388, 873, 1574, 1778, 1924, 2478 |
| HpyCH4V | TGCA | 5 cut(s) | 673, 724, 1140, 1876, 2269 |
| HpyF3I | CTNAG | 8 cut(s) | 11, 161, 908, 947, 1853, 2154, 2248, 2328 |
| HpySE526I | ACGT | 7 cut(s) | 245, 388, 873, 1574, 1778, 1924, 2478 |
| Hsp92I | GRCGYC | 5 cut(s) | 1370, 1574, 1823, 2280, 2315 |
| Hsp92II | CATG | 5 cut(s) | 778, 1144, 1278, 1790, 2035 |
| KasI | GGCGCC | 2 cut(s) | 1369, 2279 |
| Kpn2I | TCCGGA | 1 cut(s) | 93 |
| KroI | GCCGGC | 1 cut(s) | 1372 |
| KroNI | GCCGGC | 1 cut(s) | 1374 |
| KspAI | GTTAAC | 1 cut(s) | 1782 |
| KspI | CCGCGG | 2 cut(s) | 669, 2172 |
| Kzo9I | GATC | 5 cut(s) | 425, 726, 834, 936, 2115 |
| LweI | GCATC | 7 cut(s) | 337, 756, 1032, 1936, 2253, 2295, 2446 |
| MaeI | CTAG | 5 cut(s) | 77, 294, 410, 444, 2126 |
| MaeII | ACGT | 7 cut(s) | 245, 388, 873, 1574, 1778, 1924, 2478 |
| MaeIII | GTNAC | 7 cut(s) | 239, 335, 368, 697, 1423, 1546, 2053 |
| MalI | GATC | 5 cut(s) | 427, 728, 836, 938, 2117 |
| MbiI | CCGCTC | 4 cut(s) | 1632, 1846, 1987, 2427 |
| MboI | GATC | 5 cut(s) | 425, 726, 834, 936, 2115 |
| MboII | GAAGA | 7 cut(s) | 293, 376, 432, 1016, 1541, 1582, 2080 |
| MflI | RGATCY | 1 cut(s) | 726 |
| MhlI | GDGCHC | 6 cut(s) | 44, 191, 675, 717, 770, 2221 |
| MlsI | TGGCCA | 1 cut(s) | 1979 |
| MluCI | AATT | 1 cut(s) | 2073 |
| MluI | ACGCGT | 1 cut(s) | 1106 |
| MluNI | TGGCCA | 1 cut(s) | 1979 |
| Mly113I | GGCGCC | 2 cut(s) | 1370, 2280 |
| MlyI | GAGTC | 7 cut(s) | 72, 509, 947, 1189, 1511, 1769, 1794 |
| MmeI | TCCRAC | 2 cut(s) | 1419, 1777 |
| Mox20I | TGGCCA | 1 cut(s) | 1979 |
| MreI | CGCCGGCG | 1 cut(s) | 1372 |
| MroI | TCCGGA | 1 cut(s) | 93 |
| MroNI | GCCGGC | 1 cut(s) | 1372 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2082 |
| MscI | TGGCCA | 1 cut(s) | 1979 |
| MseI | TTAA | 3 cut(s) | 357, 477, 1781 |
| Msp20I | TGGCCA | 1 cut(s) | 1979 |
| MvaI | CCWGG | 4 cut(s) | 920, 1817, 1898, 1994 |
| MvnI | CGCG | 9 cut(s) | 132, 668, 1014, 1108, 1221, 1386, 1433, 2060, 2171 |
| NaeI | GCCGGC | 1 cut(s) | 1374 |
| NarI | GGCGCC | 2 cut(s) | 1370, 2280 |
| NciI | CCSGG | 6 cut(s) | 600, 1075, 1203, 2051, 2365, 2366 |
| NdeII | GATC | 5 cut(s) | 425, 726, 834, 936, 2115 |
| NgoMIV | GCCGGC | 1 cut(s) | 1372 |
| NlaIII | CATG | 5 cut(s) | 778, 1144, 1278, 1790, 2035 |
| NmeAIII | GCCGAG | 2 cut(s) | 1316, 1684 |
| NmuCI | GTSAC | 3 cut(s) | 239, 697, 2053 |
| NspI | RCATGY | 4 cut(s) | 778, 1144, 1790, 2035 |
| PaeI | GCATGC | 1 cut(s) | 1144 |
| PaqCI | CACCTGC | 1 cut(s) | 751 |
| PciI | ACATGT | 2 cut(s) | 774, 2031 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 359 |
| PdiI | GCCGGC | 1 cut(s) | 1374 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2082 |
| PfeI | GAWTC | 3 cut(s) | 1042, 1640, 2186 |
| PflFI | GACNNNGTC | 1 cut(s) | 2480 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 777, 2289 |
| Ple19I | CGATCG | 1 cut(s) | 837 |
| PleI | GAGTC | 7 cut(s) | 71, 508, 947, 1189, 1511, 1768, 1794 |
| PluTI | GGCGCC | 2 cut(s) | 1373, 2283 |
| PmaCI | CACGTG | 2 cut(s) | 246, 389 |
| PmlI | CACGTG | 2 cut(s) | 246, 389 |
| PpsI | GAGTC | 7 cut(s) | 71, 508, 947, 1189, 1511, 1768, 1794 |
| Ppu21I | YACGTR | 3 cut(s) | 246, 389, 874 |
| PpuMI | RGGWCCY | 1 cut(s) | 1489 |
| PscI | ACATGT | 2 cut(s) | 774, 2031 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1751 |
| Psp1406I | AACGTT | 1 cut(s) | 1778 |
| Psp5II | RGGWCCY | 1 cut(s) | 1489 |
| Psp6I | CCWGG | 4 cut(s) | 918, 1815, 1896, 1992 |
| PspCI | CACGTG | 2 cut(s) | 246, 389 |
| PspEI | GGTNACC | 1 cut(s) | 2053 |
| PspFI | CCCAGC | 1 cut(s) | 1475 |
| PspGI | CCWGG | 4 cut(s) | 918, 1815, 1896, 1992 |
| PspOMI | GGGCCC | 1 cut(s) | 40 |
| PspPPI | RGGWCCY | 1 cut(s) | 1489 |
| PstI | CTGCAG | 3 cut(s) | 726, 1878, 2271 |
| PsuI | RGATCY | 1 cut(s) | 726 |
| PsyI | GACNNNGTC | 1 cut(s) | 2480 |
| PvuI | CGATCG | 1 cut(s) | 837 |
| RsaI | GTAC | 8 cut(s) | 393, 849, 872, 986, 1124, 1319, 1483, 2210 |
| RsaNI | GTAC | 8 cut(s) | 392, 848, 871, 985, 1123, 1318, 1482, 2209 |
| SacII | CCGCGG | 2 cut(s) | 669, 2172 |
| SalI | GTCGAC | 1 cut(s) | 1744 |
| SaqAI | TTAA | 3 cut(s) | 357, 477, 1781 |
| Sau3AI | GATC | 5 cut(s) | 425, 726, 834, 936, 2115 |
| ScaI | AGTACT | 1 cut(s) | 1124 |
| SchI | GAGTC | 7 cut(s) | 72, 509, 947, 1189, 1511, 1769, 1794 |
| SduI | GDGCHC | 6 cut(s) | 44, 191, 675, 717, 770, 2221 |
| SfaNI | GCATC | 7 cut(s) | 337, 756, 1032, 1936, 2253, 2295, 2446 |
| SfcI | CTRYAG | 5 cut(s) | 373, 722, 1614, 1874, 2267 |
| SfoI | GGCGCC | 2 cut(s) | 1371, 2281 |
| Sfr303I | CCGCGG | 2 cut(s) | 669, 2172 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1372 |
| SgrBI | CCGCGG | 2 cut(s) | 669, 2172 |
| SinI | GGWCC | 6 cut(s) | 88, 830, 1243, 1329, 1489, 2047 |
| SmaI | CCCGGG | 1 cut(s) | 2366 |
| SpeI | ACTAGT | 1 cut(s) | 409 |
| SphI | GCATGC | 1 cut(s) | 1144 |
| Sse9I | AATT | 1 cut(s) | 2073 |
| SspDI | GGCGCC | 2 cut(s) | 1369, 2279 |
| SspI | AATATT | 1 cut(s) | 684 |
| SspMI | CTAG | 5 cut(s) | 77, 294, 410, 444, 2126 |
| StyI | CCWWGG | 3 cut(s) | 58, 883, 2016 |
| TaaI | ACNGT | 7 cut(s) | 111, 235, 374, 475, 628, 1676, 2380 |
| TaiI | ACGT | 7 cut(s) | 248, 391, 876, 1577, 1781, 1927, 2481 |
| TaqI | TCGA | 7 cut(s) | 516, 690, 939, 956, 1745, 1917, 2303 |
| TaqII | GACCGA | 3 cut(s) | 847, 1731, 2240 |
| TasI | AATT | 1 cut(s) | 2073 |
| TatI | WGTACW | 3 cut(s) | 1122, 1317, 2208 |
| TfiI | GAWTC | 3 cut(s) | 1042, 1640, 2186 |
| Tru1I | TTAA | 3 cut(s) | 357, 477, 1781 |
| Tru9I | TTAA | 3 cut(s) | 357, 477, 1781 |
| TscAI | CASTG | 8 cut(s) | 240, 460, 478, 1033, 1528, 2226, 2347, 2455 |
| TseFI | GTSAC | 3 cut(s) | 239, 697, 2053 |
| Tsp45I | GTSAC | 3 cut(s) | 239, 697, 2053 |
| TspDTI | ATGAA | 2 cut(s) | 195, 1632 |
| TspGWI | ACGGA | 3 cut(s) | 101, 1052, 1430 |
| TspMI | CCCGGG | 1 cut(s) | 2364 |
| TspRI | CASTG | 8 cut(s) | 240, 460, 478, 1033, 1528, 2226, 2347, 2455 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2480 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 777, 2289 |
| VneI | GTGCAC | 1 cut(s) | 671 |
| VpaK11BI | GGWCC | 6 cut(s) | 88, 830, 1243, 1329, 1489, 2047 |
| XceI | RCATGY | 4 cut(s) | 778, 1144, 1790, 2035 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1291 |
| XmaI | CCCGGG | 1 cut(s) | 2364 |
| XmiI | GTMKAC | 2 cut(s) | 106, 1745 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2082 |
| XspI | CTAG | 5 cut(s) | 77, 294, 410, 444, 2126 |
| ZraI | GACGTC | 1 cut(s) | 1575 |
| ZrmI | AGTACT | 1 cut(s) | 1124 |