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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 4 cut(s) | 432, 537, 1042, 1605 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 302, 399 |
| AccBSI | CCGCTC | 4 cut(s) | 695, 1363, 1390, 1603 |
| AccII | CGCG | 6 cut(s) | 735, 825, 1010, 1112, 1519, 1682 |
| AclWI | GGATC | 2 cut(s) | 786, 855 |
| AcoI | YGGCCR | 3 cut(s) | 204, 227, 1200 |
| AcsI | RAATTY | 4 cut(s) | 323, 565, 626, 769 |
| AcuI | CTGAAG | 4 cut(s) | 129, 290, 329, 1435 |
| AcyI | GRCGYC | 4 cut(s) | 433, 953, 1505, 1606 |
| AfaI | GTAC | 4 cut(s) | 598, 1147, 1242, 1370 |
| AgsI | TTSAA | 4 cut(s) | 553, 571, 632, 643 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 580 |
| AjnI | CCWGG | 5 cut(s) | 149, 540, 587, 805, 1497 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1430, 1462 |
| AluBI | AGCT | 7 cut(s) | 556, 621, 1082, 1455, 1528, 1588, 1651 |
| AluI | AGCT | 7 cut(s) | 556, 621, 1082, 1455, 1528, 1588, 1651 |
| Alw26I | GTCTC | 2 cut(s) | 311, 944 |
| AlwI | GGATC | 2 cut(s) | 786, 855 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 352 |
| Ama87I | CYCGRG | 5 cut(s) | 20, 890, 1358, 1578, 1641 |
| ApeKI | GCWGC | 8 cut(s) | 50, 256, 472, 513, 964, 1220, 1331, 1483 |
| ApoI | RAATTY | 4 cut(s) | 323, 565, 626, 769 |
| AspLEI | GCGC | 7 cut(s) | 435, 504, 889, 1114, 1608, 1682, 1684 |
| AspS9I | GGNCC | 7 cut(s) | 452, 546, 852, 901, 919, 1171, 1267 |
| AsuC2I | CCSGG | 5 cut(s) | 243, 891, 892, 1579, 1580 |
| AsuHPI | GGTGA | 5 cut(s) | 331, 853, 1103, 1111, 1370 |
| AsuNHI | GCTAGC | 1 cut(s) | 95 |
| AvaI | CYCGRG | 5 cut(s) | 20, 890, 1358, 1578, 1641 |
| AvaII | GGWCC | 2 cut(s) | 452, 919 |
| AxyI | CCTNAGG | 1 cut(s) | 1052 |
| BaeGI | GKGCMC | 1 cut(s) | 1047 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1137, 1170 |
| BanI | GGYRCC | 4 cut(s) | 432, 537, 1042, 1605 |
| BanII | GRGCYC | 2 cut(s) | 1233, 1359 |
| BauI | CACGAG | 1 cut(s) | 36 |
| BbvI | GCAGC | 8 cut(s) | 37, 243, 459, 525, 951, 1232, 1343, 1470 |
| BccI | CCATC | 2 cut(s) | 406, 1254 |
| BceAI | ACGGC | 4 cut(s) | 186, 194, 214, 1567 |
| BciT130I | CCWGG | 5 cut(s) | 151, 542, 589, 807, 1499 |
| BcnI | CCSGG | 5 cut(s) | 243, 891, 892, 1579, 1580 |
| BcoDI | GTCTC | 2 cut(s) | 311, 944 |
| BfaI | CTAG | 3 cut(s) | 81, 96, 1394 |
| BfoI | RGCGCY | 3 cut(s) | 436, 505, 1609 |
| BlpI | GCTNAGC | 1 cut(s) | 1456 |
| Bme18I | GGWCC | 2 cut(s) | 452, 919 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 580 |
| BmeT110I | CYCGRG | 5 cut(s) | 20, 890, 1358, 1578, 1641 |
| BmgT120I | GGNCC | 7 cut(s) | 452, 546, 852, 901, 919, 1171, 1267 |
| BmrI | ACTGGG | 1 cut(s) | 941 |
| BmsI | GCATC | 4 cut(s) | 34, 500, 1618, 1627 |
| BmtI | GCTAGC | 1 cut(s) | 99 |
| BmuI | ACTGGG | 1 cut(s) | 941 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1471 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1066, 1098 |
| BpmI | CTGGAG | 2 cut(s) | 1136, 1541 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1456 |
| BpuMI | CCSGG | 5 cut(s) | 243, 891, 892, 1579, 1580 |
| BsaHI | GRCGYC | 4 cut(s) | 433, 953, 1505, 1606 |
| BsaI | GGTCTC | 1 cut(s) | 311 |
| BsaWI | WCCGGW | 3 cut(s) | 440, 765, 1088 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 128, 158, 866, 896, 1430, 1460 |
| Bse118I | RCCGGY | 1 cut(s) | 955 |
| Bse1I | ACTGG | 4 cut(s) | 819, 936, 1153, 1441 |
| Bse21I | CCTNAGG | 1 cut(s) | 1052 |
| BseBI | CCWGG | 5 cut(s) | 151, 542, 589, 807, 1499 |
| BseGI | GGATG | 2 cut(s) | 515, 1600 |
| BseMII | CTCAG | 5 cut(s) | 929, 987, 1136, 1332, 1470 |
| BseNI | ACTGG | 4 cut(s) | 819, 936, 1153, 1441 |
| BsePI | GCGCGC | 1 cut(s) | 1680 |
| BseRI | GAGGAG | 4 cut(s) | 83, 149, 1556, 1613 |
| BseSI | GKGCMC | 1 cut(s) | 1047 |
| BseX3I | CGGCCG | 3 cut(s) | 204, 227, 1200 |
| BseXI | GCAGC | 8 cut(s) | 37, 243, 459, 525, 951, 1232, 1343, 1470 |
| BseYI | CCCAGC | 3 cut(s) | 621, 903, 1528 |
| BsgI | GTGCAG | 1 cut(s) | 458 |
| Bsh1236I | CGCG | 6 cut(s) | 735, 825, 1010, 1112, 1519, 1682 |
| Bsh1285I | CGRYCG | 5 cut(s) | 207, 230, 263, 459, 1203 |
| BshNI | GGYRCC | 4 cut(s) | 432, 537, 1042, 1605 |
| BsiEI | CGRYCG | 5 cut(s) | 207, 230, 263, 459, 1203 |
| BsiHKCI | CYCGRG | 5 cut(s) | 20, 890, 1358, 1578, 1641 |
| BsiSI | CCGG | 7 cut(s) | 242, 441, 766, 891, 956, 1089, 1579 |
| BslFI | GGGAC | 2 cut(s) | 1014, 1122 |
| BsmAI | GTCTC | 2 cut(s) | 311, 944 |
| BsmBI | CGTCTC | 1 cut(s) | 944 |
| BsmFI | GGGAC | 2 cut(s) | 1014, 1122 |
| Bso31I | GGTCTC | 1 cut(s) | 311 |
| BsoBI | CYCGRG | 5 cut(s) | 20, 890, 1358, 1578, 1641 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1047, 1233, 1359 |
| Bsp143I | GATC | 5 cut(s) | 214, 778, 847, 858, 1315 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1456 |
| Bsp19I | CCATGG | 1 cut(s) | 843 |
| Bsp68I | TCGCGA | 1 cut(s) | 825 |
| BspCNI | CTCAG | 5 cut(s) | 930, 988, 1135, 1333, 1469 |
| BspFNI | CGCG | 6 cut(s) | 735, 825, 1010, 1112, 1519, 1682 |
| BspOI | GCTAGC | 1 cut(s) | 99 |
| BspPI | GGATC | 2 cut(s) | 786, 855 |
| BspT107I | GGYRCC | 4 cut(s) | 432, 537, 1042, 1605 |
| BspTNI | GGTCTC | 1 cut(s) | 311 |
| BsrBI | CCGCTC | 4 cut(s) | 695, 1363, 1390, 1603 |
| BsrFI | RCCGGY | 1 cut(s) | 955 |
| BsrI | ACTGG | 4 cut(s) | 819, 936, 1153, 1441 |
| BssAI | RCCGGY | 1 cut(s) | 955 |
| BssHII | GCGCGC | 1 cut(s) | 1680 |
| BssMI | GATC | 5 cut(s) | 214, 778, 847, 858, 1315 |
| BssNI | GRCGYC | 4 cut(s) | 433, 953, 1505, 1606 |
| BssSI | CACGAG | 1 cut(s) | 36 |
| BssT1I | CCWWGG | 4 cut(s) | 30, 505, 843, 1174 |
| Bst2BI | CACGAG | 1 cut(s) | 36 |
| Bst2UI | CCWGG | 5 cut(s) | 151, 542, 589, 807, 1499 |
| Bst4CI | ACNGT | 4 cut(s) | 429, 460, 913, 1105 |
| BstACI | GRCGYC | 4 cut(s) | 433, 953, 1505, 1606 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1303 |
| BstDEI | CTNAG | 8 cut(s) | 530, 938, 996, 1052, 1122, 1341, 1456, 1614 |
| BstDSI | CCRYGG | 4 cut(s) | 748, 843, 1008, 1517 |
| BstEII | GGTNACC | 1 cut(s) | 1099 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1613 |
| BstF5I | GGATG | 2 cut(s) | 515, 1600 |
| BstFNI | CGCG | 6 cut(s) | 735, 825, 1010, 1112, 1519, 1682 |
| BstH2I | RGCGCY | 3 cut(s) | 436, 505, 1609 |
| BstHHI | GCGC | 7 cut(s) | 435, 504, 889, 1114, 1608, 1682, 1684 |
| BstKTI | GATC | 5 cut(s) | 217, 781, 850, 861, 1318 |
| BstMAI | GTCTC | 2 cut(s) | 311, 944 |
| BstMBI | GATC | 5 cut(s) | 214, 778, 847, 858, 1315 |
| BstMCI | CGRYCG | 5 cut(s) | 207, 230, 263, 459, 1203 |
| BstNI | CCWGG | 5 cut(s) | 151, 542, 589, 807, 1499 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1471 |
| BstPI | GGTNACC | 1 cut(s) | 1099 |
| BstSLI | GKGCMC | 1 cut(s) | 1047 |
| BstUI | CGCG | 6 cut(s) | 735, 825, 1010, 1112, 1519, 1682 |
| BstV1I | GCAGC | 8 cut(s) | 37, 243, 459, 525, 951, 1232, 1343, 1470 |
| BstX2I | RGATCY | 1 cut(s) | 778 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 931 |
| BstYI | RGATCY | 1 cut(s) | 778 |
| BstZI | CGGCCG | 3 cut(s) | 204, 227, 1200 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1052 |
| BtgI | CCRYGG | 4 cut(s) | 748, 843, 1008, 1517 |
| BtsCI | GGATG | 2 cut(s) | 515, 1600 |
| BtsIMutI | CAGTG | 3 cut(s) | 105, 425, 929 |
| BtuMI | TCGCGA | 1 cut(s) | 825 |
| CaiI | CAGNNNCTG | 1 cut(s) | 352 |
| CciNI | GCGGCCGC | 1 cut(s) | 204 |
| CfoI | GCGC | 7 cut(s) | 435, 504, 889, 1114, 1608, 1682, 1684 |
| Cfr10I | RCCGGY | 1 cut(s) | 955 |
| Cfr13I | GGNCC | 7 cut(s) | 452, 546, 852, 901, 919, 1171, 1267 |
| Cfr42I | CCGCGG | 2 cut(s) | 1011, 1520 |
| Cfr9I | CCCGGG | 2 cut(s) | 890, 1578 |
| CseI | GACGC | 8 cut(s) | 273, 656, 724, 961, 1008, 1124, 1172, 1494 |
| Csp6I | GTAC | 4 cut(s) | 597, 1146, 1241, 1369 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1146, 1181 |
| CviAII | CATG | 5 cut(s) | 580, 844, 970, 1291, 1487 |
| CviQI | GTAC | 4 cut(s) | 597, 1146, 1241, 1369 |
| DdeI | CTNAG | 8 cut(s) | 530, 938, 996, 1052, 1122, 1341, 1456, 1614 |
| DinI | GGCGCC | 2 cut(s) | 434, 1607 |
| DpnI | GATC | 5 cut(s) | 216, 780, 849, 860, 1317 |
| DpnII | GATC | 5 cut(s) | 214, 778, 847, 858, 1315 |
| DriI | GACNNNNNGTC | 1 cut(s) | 580 |
| EaeI | YGGCCR | 3 cut(s) | 204, 227, 1200 |
| EagI | CGGCCG | 3 cut(s) | 204, 227, 1200 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 580 |
| EciI | GGCGGA | 3 cut(s) | 773, 1367, 1607 |
| EclXI | CGGCCG | 3 cut(s) | 204, 227, 1200 |
| Eco130I | CCWWGG | 4 cut(s) | 30, 505, 843, 1174 |
| Eco24I | GRGCYC | 2 cut(s) | 1233, 1359 |
| Eco31I | GGTCTC | 1 cut(s) | 311 |
| Eco47I | GGWCC | 2 cut(s) | 452, 919 |
| Eco52I | CGGCCG | 3 cut(s) | 204, 227, 1200 |
| Eco57I | CTGAAG | 4 cut(s) | 129, 290, 329, 1435 |
| Eco81I | CCTNAGG | 1 cut(s) | 1052 |
| Eco88I | CYCGRG | 5 cut(s) | 20, 890, 1358, 1578, 1641 |
| Eco91I | GGTNACC | 1 cut(s) | 1099 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1613 |
| EcoO109I | RGGNCCY | 2 cut(s) | 546, 1267 |
| EcoO65I | GGTNACC | 1 cut(s) | 1099 |
| EcoRII | CCWGG | 5 cut(s) | 149, 540, 587, 805, 1497 |
| EcoT14I | CCWWGG | 4 cut(s) | 30, 505, 843, 1174 |
| EcoT38I | GRGCYC | 2 cut(s) | 1233, 1359 |
| EgeI | GGCGCC | 2 cut(s) | 434, 1607 |
| EheI | GGCGCC | 2 cut(s) | 434, 1607 |
| ErhI | CCWWGG | 4 cut(s) | 30, 505, 843, 1174 |
| Esp3I | CGTCTC | 1 cut(s) | 944 |
| FaeI | CATG | 5 cut(s) | 583, 847, 973, 1294, 1490 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 513, 545 |
| FaqI | GGGAC | 2 cut(s) | 1014, 1122 |
| FatI | CATG | 5 cut(s) | 579, 843, 969, 1290, 1486 |
| FokI | GGATG | 2 cut(s) | 522, 1607 |
| FriOI | GRGCYC | 2 cut(s) | 1233, 1359 |
| FspBI | CTAG | 3 cut(s) | 81, 96, 1394 |
| GlaI | GCGC | 7 cut(s) | 434, 503, 888, 1113, 1607, 1681, 1683 |
| GsaI | CCCAGC | 3 cut(s) | 625, 907, 1532 |
| GsuI | CTGGAG | 2 cut(s) | 1136, 1541 |
| HaeII | RGCGCY | 3 cut(s) | 436, 505, 1609 |
| HapII | CCGG | 7 cut(s) | 242, 441, 766, 891, 956, 1089, 1579 |
| HgaI | GACGC | 8 cut(s) | 273, 656, 724, 961, 1008, 1124, 1172, 1494 |
| HhaI | GCGC | 7 cut(s) | 435, 504, 889, 1114, 1608, 1682, 1684 |
| Hin1I | GRCGYC | 4 cut(s) | 433, 953, 1505, 1606 |
| Hin1II | CATG | 5 cut(s) | 583, 847, 973, 1294, 1490 |
| Hin6I | GCGC | 7 cut(s) | 433, 502, 887, 1112, 1606, 1680, 1682 |
| HinP1I | GCGC | 7 cut(s) | 433, 502, 887, 1112, 1606, 1680, 1682 |
| HincII | GTYRAC | 3 cut(s) | 178, 1428, 1569 |
| HindII | GTYRAC | 3 cut(s) | 178, 1428, 1569 |
| HinfI | GANTC | 8 cut(s) | 143, 349, 575, 744, 797, 1196, 1214, 1322 |
| HpaII | CCGG | 7 cut(s) | 242, 441, 766, 891, 956, 1089, 1579 |
| HphI | GGTGA | 5 cut(s) | 331, 853, 1103, 1111, 1370 |
| Hpy166II | GTNNAC | 5 cut(s) | 178, 919, 1428, 1438, 1569 |
| Hpy188I | TCNGA | 9 cut(s) | 348, 456, 676, 949, 997, 1125, 1251, 1342, 1510 |
| Hpy188III | TCNNGA | 6 cut(s) | 296, 632, 664, 824, 1319, 1558 |
| Hpy8I | GTNNAC | 5 cut(s) | 178, 919, 1428, 1438, 1569 |
| Hpy99I | CGWCG | 6 cut(s) | 289, 661, 1024, 1188, 1208, 1211 |
| HpyCH4III | ACNGT | 4 cut(s) | 429, 460, 913, 1105 |
| HpyCH4IV | ACGT | 1 cut(s) | 659 |
| HpyCH4V | TGCA | 6 cut(s) | 118, 475, 513, 1306, 1486, 1697 |
| HpyF3I | CTNAG | 8 cut(s) | 530, 938, 996, 1052, 1122, 1341, 1456, 1614 |
| HpySE526I | ACGT | 1 cut(s) | 659 |
| Hsp92I | GRCGYC | 4 cut(s) | 433, 953, 1505, 1606 |
| Hsp92II | CATG | 5 cut(s) | 583, 847, 973, 1294, 1490 |
| HspAI | GCGC | 7 cut(s) | 433, 502, 887, 1112, 1606, 1680, 1682 |
| KasI | GGCGCC | 2 cut(s) | 432, 1605 |
| KspI | CCGCGG | 2 cut(s) | 1011, 1520 |
| Kzo9I | GATC | 5 cut(s) | 214, 778, 847, 858, 1315 |
| LmnI | GCTCC | 7 cut(s) | 107, 1018, 1087, 1117, 1294, 1354, 1600 |
| Lsp1109I | GCAGC | 8 cut(s) | 37, 243, 459, 525, 951, 1232, 1343, 1470 |
| LweI | GCATC | 4 cut(s) | 34, 500, 1618, 1627 |
| MaeI | CTAG | 3 cut(s) | 81, 96, 1394 |
| MaeII | ACGT | 1 cut(s) | 659 |
| MaeIII | GTNAC | 4 cut(s) | 610, 1099, 1153, 1657 |
| MalI | GATC | 5 cut(s) | 216, 780, 849, 860, 1317 |
| MbiI | CCGCTC | 4 cut(s) | 695, 1363, 1390, 1603 |
| MboI | GATC | 5 cut(s) | 214, 778, 847, 858, 1315 |
| MboII | GAAGA | 3 cut(s) | 53, 284, 335 |
| MflI | RGATCY | 1 cut(s) | 778 |
| MhlI | GDGCHC | 3 cut(s) | 1047, 1233, 1359 |
| MluCI | AATT | 5 cut(s) | 323, 565, 626, 769, 1685 |
| Mly113I | GGCGCC | 2 cut(s) | 433, 1606 |
| MlyI | GAGTC | 3 cut(s) | 152, 569, 1316 |
| MmeI | TCCRAC | 5 cut(s) | 479, 654, 706, 756, 927 |
| MseI | TTAA | 5 cut(s) | 420, 525, 669, 1548, 1689 |
| MslI | CAYNNNNRTG | 1 cut(s) | 480 |
| MspA1I | CMGCKG | 8 cut(s) | 50, 268, 516, 621, 1010, 1433, 1519, 1634 |
| MspI | CCGG | 7 cut(s) | 242, 441, 766, 891, 956, 1089, 1579 |
| MvaI | CCWGG | 5 cut(s) | 151, 542, 589, 807, 1499 |
| MvnI | CGCG | 6 cut(s) | 735, 825, 1010, 1112, 1519, 1682 |
| NarI | GGCGCC | 2 cut(s) | 433, 1606 |
| NciI | CCSGG | 5 cut(s) | 243, 891, 892, 1579, 1580 |
| NcoI | CCATGG | 1 cut(s) | 843 |
| NdeII | GATC | 5 cut(s) | 214, 778, 847, 858, 1315 |
| NheI | GCTAGC | 1 cut(s) | 95 |
| NlaIII | CATG | 5 cut(s) | 583, 847, 973, 1294, 1490 |
| NmuCI | GTSAC | 3 cut(s) | 610, 1099, 1153 |
| NotI | GCGGCCGC | 1 cut(s) | 204 |
| NruI | TCGCGA | 1 cut(s) | 825 |
| PaeR7I | CTCGAG | 1 cut(s) | 1641 |
| PauI | GCGCGC | 1 cut(s) | 1680 |
| PfeI | GAWTC | 5 cut(s) | 349, 744, 797, 1196, 1214 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 302, 399 |
| PleI | GAGTC | 3 cut(s) | 151, 569, 1316 |
| PluTI | GGCGCC | 2 cut(s) | 436, 1609 |
| PpsI | GAGTC | 3 cut(s) | 151, 569, 1316 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1471 |
| Psp6I | CCWGG | 5 cut(s) | 149, 540, 587, 805, 1497 |
| PspEI | GGTNACC | 1 cut(s) | 1099 |
| PspFI | CCCAGC | 3 cut(s) | 621, 903, 1528 |
| PspGI | CCWGG | 5 cut(s) | 149, 540, 587, 805, 1497 |
| PspPI | GGNCC | 7 cut(s) | 452, 546, 852, 901, 919, 1171, 1267 |
| PspXI | VCTCGAGB | 1 cut(s) | 1641 |
| PstNI | CAGNNNCTG | 1 cut(s) | 352 |
| PsuI | RGATCY | 1 cut(s) | 778 |
| PteI | GCGCGC | 1 cut(s) | 1680 |
| PvuII | CAGCTG | 1 cut(s) | 621 |
| RruI | TCGCGA | 1 cut(s) | 825 |
| RsaI | GTAC | 4 cut(s) | 598, 1147, 1242, 1370 |
| RsaNI | GTAC | 4 cut(s) | 597, 1146, 1241, 1369 |
| RseI | CAYNNNNRTG | 1 cut(s) | 480 |
| SacII | CCGCGG | 2 cut(s) | 1011, 1520 |
| SaqAI | TTAA | 5 cut(s) | 420, 525, 669, 1548, 1689 |
| Sau3AI | GATC | 5 cut(s) | 214, 778, 847, 858, 1315 |
| Sau96I | GGNCC | 7 cut(s) | 452, 546, 852, 901, 919, 1171, 1267 |
| SchI | GAGTC | 3 cut(s) | 152, 569, 1316 |
| SduI | GDGCHC | 3 cut(s) | 1047, 1233, 1359 |
| SfaNI | GCATC | 4 cut(s) | 34, 500, 1618, 1627 |
| SfoI | GGCGCC | 2 cut(s) | 434, 1607 |
| Sfr274I | CTCGAG | 1 cut(s) | 1641 |
| Sfr303I | CCGCGG | 2 cut(s) | 1011, 1520 |
| SgrAI | CRCCGGYG | 1 cut(s) | 955 |
| SgrBI | CCGCGG | 2 cut(s) | 1011, 1520 |
| SinI | GGWCC | 2 cut(s) | 452, 919 |
| SlaI | CTCGAG | 1 cut(s) | 1641 |
| SmaI | CCCGGG | 2 cut(s) | 892, 1580 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 480 |
| SmlI | CTYRAG | 1 cut(s) | 1641 |
| SmoI | CTYRAG | 1 cut(s) | 1641 |
| Sse9I | AATT | 5 cut(s) | 323, 565, 626, 769, 1685 |
| SspDI | GGCGCC | 2 cut(s) | 432, 1605 |
| SspMI | CTAG | 3 cut(s) | 81, 96, 1394 |
| StyI | CCWWGG | 4 cut(s) | 30, 505, 843, 1174 |
| TaaI | ACNGT | 4 cut(s) | 429, 460, 913, 1105 |
| TaiI | ACGT | 1 cut(s) | 662 |
| TaqI | TCGA | 6 cut(s) | 194, 217, 691, 720, 1320, 1642 |
| TasI | AATT | 5 cut(s) | 323, 565, 626, 769, 1685 |
| TfiI | GAWTC | 5 cut(s) | 349, 744, 797, 1196, 1214 |
| Tru1I | TTAA | 5 cut(s) | 420, 525, 669, 1548, 1689 |
| Tru9I | TTAA | 5 cut(s) | 420, 525, 669, 1548, 1689 |
| TscAI | CASTG | 3 cut(s) | 112, 432, 936 |
| TseFI | GTSAC | 3 cut(s) | 610, 1099, 1153 |
| TseI | GCWGC | 8 cut(s) | 50, 256, 472, 513, 964, 1220, 1331, 1483 |
| Tsp45I | GTSAC | 3 cut(s) | 610, 1099, 1153 |
| TspDTI | ATGAA | 2 cut(s) | 512, 1503 |
| TspGWI | ACGGA | 5 cut(s) | 180, 737, 1465, 1586, 1645 |
| TspMI | CCCGGG | 2 cut(s) | 890, 1578 |
| TspRI | CASTG | 3 cut(s) | 112, 432, 936 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 302, 399 |
| VpaK11BI | GGWCC | 2 cut(s) | 452, 919 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1613 |
| XapI | RAATTY | 4 cut(s) | 323, 565, 626, 769 |
| XhoI | CTCGAG | 1 cut(s) | 1641 |
| XmaI | CCCGGG | 2 cut(s) | 890, 1578 |
| XspI | CTAG | 3 cut(s) | 81, 96, 1394 |