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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 468 |
| AccBSI | CCGCTC | 1 cut(s) | 342 |
| AccII | CGCG | 2 cut(s) | 62, 110 |
| AcoI | YGGCCR | 1 cut(s) | 63 |
| AcsI | RAATTY | 1 cut(s) | 119 |
| AcyI | GRCGYC | 1 cut(s) | 479 |
| AfaI | GTAC | 1 cut(s) | 113 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 72, 328, 468 |
| AflIII | ACRYGT | 1 cut(s) | 108 |
| AgsI | TTSAA | 1 cut(s) | 373 |
| AjnI | CCWGG | 3 cut(s) | 93, 123, 544 |
| AluBI | AGCT | 6 cut(s) | 160, 202, 325, 398, 442, 508 |
| AluI | AGCT | 6 cut(s) | 160, 202, 325, 398, 442, 508 |
| AoxI | GGCC | 5 cut(s) | 6, 63, 351, 417, 471 |
| ApeKI | GCWGC | 1 cut(s) | 317 |
| ApoI | RAATTY | 1 cut(s) | 119 |
| AspA2I | CCTAGG | 1 cut(s) | 517 |
| AspLEI | GCGC | 2 cut(s) | 461, 555 |
| AspS9I | GGNCC | 4 cut(s) | 16, 471, 486, 528 |
| AsuC2I | CCSGG | 2 cut(s) | 292, 584 |
| AsuHPI | GGTGA | 2 cut(s) | 67, 307 |
| AvaII | GGWCC | 3 cut(s) | 16, 486, 528 |
| AvrII | CCTAGG | 1 cut(s) | 517 |
| BauI | CACGAG | 1 cut(s) | 192 |
| BbvCI | CCTCAGC | 1 cut(s) | 348 |
| BbvI | GCAGC | 1 cut(s) | 304 |
| BciT130I | CCWGG | 3 cut(s) | 95, 125, 546 |
| BciVI | GTATCC | 1 cut(s) | 358 |
| BcnI | CCSGG | 2 cut(s) | 292, 584 |
| BfaI | CTAG | 2 cut(s) | 518, 598 |
| BfoI | RGCGCY | 1 cut(s) | 462 |
| BfuI | GTATCC | 1 cut(s) | 358 |
| BisI | GCNGC | 6 cut(s) | 63, 66, 318, 354, 384, 411 |
| BlnI | CCTAGG | 1 cut(s) | 517 |
| BlsI | GCNGC | 6 cut(s) | 64, 67, 319, 355, 385, 412 |
| Bme1390I | CCNGG | 5 cut(s) | 95, 125, 292, 546, 584 |
| Bme18I | GGWCC | 3 cut(s) | 16, 486, 528 |
| BmgT120I | GGNCC | 4 cut(s) | 16, 471, 486, 528 |
| BmiI | GGNNCC | 5 cut(s) | 17, 45, 254, 487, 529 |
| BmrFI | CCNGG | 5 cut(s) | 95, 125, 292, 546, 584 |
| BmrI | ACTGGG | 1 cut(s) | 478 |
| BmsI | GCATC | 2 cut(s) | 169, 178 |
| BmuI | ACTGGG | 1 cut(s) | 478 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 341, 373 |
| BpmI | CTGGAG | 3 cut(s) | 239, 347, 475 |
| Bpu10I | CCTNAGC | 1 cut(s) | 348 |
| BpuEI | CTTGAG | 1 cut(s) | 248 |
| BpuMI | CCSGG | 2 cut(s) | 292, 584 |
| BsaHI | GRCGYC | 1 cut(s) | 479 |
| BsaJI | CCNNGG | 9 cut(s) | 51, 60, 165, 183, 291, 405, 474, 517, 531 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 98, 128 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 72, 328, 468 |
| Bse118I | RCCGGY | 2 cut(s) | 249, 419 |
| Bse1I | ACTGG | 2 cut(s) | 144, 473 |
| BseBI | CCWGG | 3 cut(s) | 95, 125, 546 |
| BseDI | CCNNGG | 9 cut(s) | 51, 60, 165, 183, 291, 405, 474, 517, 531 |
| BseGI | GGATG | 1 cut(s) | 193 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 72, 328, 468 |
| BseMII | CTCAG | 1 cut(s) | 339 |
| BseNI | ACTGG | 2 cut(s) | 144, 473 |
| BseRI | GAGGAG | 1 cut(s) | 352 |
| BseX3I | CGGCCG | 1 cut(s) | 63 |
| BseXI | GCAGC | 1 cut(s) | 304 |
| BseYI | CCCAGC | 1 cut(s) | 321 |
| BsgI | GTGCAG | 1 cut(s) | 101 |
| Bsh1236I | CGCG | 2 cut(s) | 62, 110 |
| Bsh1285I | CGRYCG | 1 cut(s) | 66 |
| BshFI | GGCC | 5 cut(s) | 8, 65, 353, 419, 473 |
| BsiEI | CGRYCG | 1 cut(s) | 66 |
| BsiSI | CCGG | 4 cut(s) | 250, 291, 420, 584 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 72, 328, 468 |
| BsmI | GAATGC | 1 cut(s) | 179 |
| BsnI | GGCC | 5 cut(s) | 8, 65, 353, 419, 473 |
| Bsp143I | GATC | 1 cut(s) | 238 |
| Bsp19I | CCATGG | 1 cut(s) | 51 |
| BspANI | GGCC | 5 cut(s) | 8, 65, 353, 419, 473 |
| BspCNI | CTCAG | 1 cut(s) | 340 |
| BspFNI | CGCG | 2 cut(s) | 62, 110 |
| BspLI | GGNNCC | 5 cut(s) | 17, 45, 254, 487, 529 |
| BsrBI | CCGCTC | 1 cut(s) | 342 |
| BsrFI | RCCGGY | 2 cut(s) | 249, 419 |
| BsrI | ACTGG | 2 cut(s) | 144, 473 |
| BssAI | RCCGGY | 2 cut(s) | 249, 419 |
| BssECI | CCNNGG | 9 cut(s) | 51, 60, 165, 183, 291, 405, 474, 517, 531 |
| BssMI | GATC | 1 cut(s) | 238 |
| BssNI | GRCGYC | 1 cut(s) | 479 |
| BssSI | CACGAG | 1 cut(s) | 192 |
| BssT1I | CCWWGG | 4 cut(s) | 51, 165, 474, 517 |
| Bst2BI | CACGAG | 1 cut(s) | 192 |
| Bst2UI | CCWGG | 3 cut(s) | 95, 125, 546 |
| BstACI | GRCGYC | 1 cut(s) | 479 |
| BstC8I | GCNNGC | 4 cut(s) | 23, 200, 396, 551 |
| BstDEI | CTNAG | 1 cut(s) | 348 |
| BstDSI | CCRYGG | 2 cut(s) | 51, 60 |
| BstEII | GGTNACC | 1 cut(s) | 55 |
| BstF5I | GGATG | 1 cut(s) | 193 |
| BstFNI | CGCG | 2 cut(s) | 62, 110 |
| BstH2I | RGCGCY | 1 cut(s) | 462 |
| BstHHI | GCGC | 2 cut(s) | 461, 555 |
| BstKTI | GATC | 1 cut(s) | 241 |
| BstMBI | GATC | 1 cut(s) | 238 |
| BstMCI | CGRYCG | 1 cut(s) | 66 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 188, 287, 353, 416, 550 |
| BstNI | CCWGG | 3 cut(s) | 95, 125, 546 |
| BstPI | GGTNACC | 1 cut(s) | 55 |
| BstSCI | CCNGG | 5 cut(s) | 93, 123, 290, 544, 582 |
| BstUI | CGCG | 2 cut(s) | 62, 110 |
| BstV1I | GCAGC | 1 cut(s) | 304 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 124 |
| BstZI | CGGCCG | 1 cut(s) | 63 |
| BsuI | GTATCC | 1 cut(s) | 358 |
| BsuRI | GGCC | 5 cut(s) | 8, 65, 353, 419, 473 |
| BtgI | CCRYGG | 2 cut(s) | 51, 60 |
| BtgZI | GCGATG | 1 cut(s) | 192 |
| BtsCI | GGATG | 1 cut(s) | 193 |
| BtsI | GCAGTG | 1 cut(s) | 568 |
| BtsIMutI | CAGTG | 1 cut(s) | 568 |
| Cac8I | GCNNGC | 4 cut(s) | 23, 200, 396, 551 |
| CciNI | GCGGCCGC | 1 cut(s) | 63 |
| CfoI | GCGC | 2 cut(s) | 461, 555 |
| Cfr10I | RCCGGY | 2 cut(s) | 249, 419 |
| Cfr13I | GGNCC | 4 cut(s) | 16, 471, 486, 528 |
| Cfr42I | CCGCGG | 1 cut(s) | 63 |
| CseI | GACGC | 2 cut(s) | 116, 468 |
| Csp6I | GTAC | 1 cut(s) | 112 |
| CviAII | CATG | 1 cut(s) | 52 |
| CviQI | GTAC | 1 cut(s) | 112 |
| DdeI | CTNAG | 1 cut(s) | 348 |
| DpnI | GATC | 1 cut(s) | 240 |
| DpnII | GATC | 1 cut(s) | 238 |
| EaeI | YGGCCR | 1 cut(s) | 63 |
| EagI | CGGCCG | 1 cut(s) | 63 |
| EciI | GGCGGA | 3 cut(s) | 8, 185, 277 |
| EclXI | CGGCCG | 1 cut(s) | 63 |
| Eco130I | CCWWGG | 4 cut(s) | 51, 165, 474, 517 |
| Eco47I | GGWCC | 3 cut(s) | 16, 486, 528 |
| Eco52I | CGGCCG | 1 cut(s) | 63 |
| Eco91I | GGTNACC | 1 cut(s) | 55 |
| EcoO109I | RGGNCCY | 2 cut(s) | 486, 528 |
| EcoO65I | GGTNACC | 1 cut(s) | 55 |
| EcoRII | CCWGG | 3 cut(s) | 93, 123, 544 |
| EcoT14I | CCWWGG | 4 cut(s) | 51, 165, 474, 517 |
| ErhI | CCWWGG | 4 cut(s) | 51, 165, 474, 517 |
| FaeI | CATG | 1 cut(s) | 55 |
| FaiI | YATR | 6 cut(s) | 11, 53, 266, 279, 388, 390 |
| FatI | CATG | 1 cut(s) | 51 |
| Fnu4HI | GCNGC | 6 cut(s) | 63, 66, 318, 354, 384, 411 |
| FokI | GGATG | 1 cut(s) | 200 |
| Fsp4HI | GCNGC | 6 cut(s) | 63, 66, 318, 354, 384, 411 |
| FspBI | CTAG | 2 cut(s) | 518, 598 |
| GlaI | GCGC | 2 cut(s) | 460, 554 |
| GluI | GCNGC | 6 cut(s) | 63, 66, 318, 354, 384, 411 |
| GsaI | CCCAGC | 1 cut(s) | 325 |
| GsuI | CTGGAG | 3 cut(s) | 239, 347, 475 |
| HaeII | RGCGCY | 1 cut(s) | 462 |
| HaeIII | GGCC | 5 cut(s) | 8, 65, 353, 419, 473 |
| HapII | CCGG | 4 cut(s) | 250, 291, 420, 584 |
| HgaI | GACGC | 2 cut(s) | 116, 468 |
| HhaI | GCGC | 2 cut(s) | 461, 555 |
| Hin1I | GRCGYC | 1 cut(s) | 479 |
| Hin1II | CATG | 1 cut(s) | 55 |
| Hin6I | GCGC | 2 cut(s) | 459, 553 |
| HinP1I | GCGC | 2 cut(s) | 459, 553 |
| HindIII | AAGCTT | 1 cut(s) | 396 |
| HinfI | GANTC | 2 cut(s) | 98, 272 |
| HpaII | CCGG | 4 cut(s) | 250, 291, 420, 584 |
| HphI | GGTGA | 2 cut(s) | 67, 307 |
| Hpy166II | GTNNAC | 1 cut(s) | 298 |
| Hpy188I | TCNGA | 2 cut(s) | 187, 447 |
| Hpy8I | GTNNAC | 1 cut(s) | 298 |
| HpyAV | CCTTC | 2 cut(s) | 379, 409 |
| HpyCH4IV | ACGT | 1 cut(s) | 435 |
| HpyCH4V | TGCA | 1 cut(s) | 82 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 188, 287, 353, 416, 550 |
| HpyF3I | CTNAG | 1 cut(s) | 348 |
| HpySE526I | ACGT | 1 cut(s) | 435 |
| Hsp92I | GRCGYC | 1 cut(s) | 479 |
| Hsp92II | CATG | 1 cut(s) | 55 |
| HspAI | GCGC | 2 cut(s) | 459, 553 |
| KspI | CCGCGG | 1 cut(s) | 63 |
| Kzo9I | GATC | 1 cut(s) | 238 |
| LmnI | GCTCC | 3 cut(s) | 49, 258, 339 |
| Lsp1109I | GCAGC | 1 cut(s) | 304 |
| LweI | GCATC | 2 cut(s) | 169, 178 |
| MaeI | CTAG | 2 cut(s) | 518, 598 |
| MaeII | ACGT | 1 cut(s) | 435 |
| MaeIII | GTNAC | 1 cut(s) | 55 |
| MalI | GATC | 1 cut(s) | 240 |
| MbiI | CCGCTC | 1 cut(s) | 342 |
| MboI | GATC | 1 cut(s) | 238 |
| MboII | GAAGA | 1 cut(s) | 40 |
| MluCI | AATT | 1 cut(s) | 119 |
| MluI | ACGCGT | 1 cut(s) | 108 |
| MlyI | GAGTC | 2 cut(s) | 92, 266 |
| MspA1I | CMGCKG | 3 cut(s) | 62, 160, 325 |
| MspI | CCGG | 4 cut(s) | 250, 291, 420, 584 |
| MspR9I | CCNGG | 5 cut(s) | 95, 125, 292, 546, 584 |
| Mva1269I | GAATGC | 1 cut(s) | 179 |
| MvaI | CCWGG | 3 cut(s) | 95, 125, 546 |
| MvnI | CGCG | 2 cut(s) | 62, 110 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 188, 287, 353, 416, 550 |
| NciI | CCSGG | 2 cut(s) | 292, 584 |
| NcoI | CCATGG | 1 cut(s) | 51 |
| NdeII | GATC | 1 cut(s) | 238 |
| NlaIII | CATG | 1 cut(s) | 55 |
| NlaIV | GGNNCC | 5 cut(s) | 17, 45, 254, 487, 529 |
| NmeAIII | GCCGAG | 1 cut(s) | 512 |
| NmuCI | GTSAC | 1 cut(s) | 55 |
| NotI | GCGGCCGC | 1 cut(s) | 63 |
| PctI | GAATGC | 1 cut(s) | 179 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 468 |
| PkrI | GCNGC | 6 cut(s) | 64, 67, 319, 355, 385, 412 |
| PleI | GAGTC | 2 cut(s) | 92, 266 |
| PpsI | GAGTC | 2 cut(s) | 92, 266 |
| PpuMI | RGGWCCY | 2 cut(s) | 486, 528 |
| Psp5II | RGGWCCY | 2 cut(s) | 486, 528 |
| Psp6I | CCWGG | 3 cut(s) | 93, 123, 544 |
| PspEI | GGTNACC | 1 cut(s) | 55 |
| PspFI | CCCAGC | 1 cut(s) | 321 |
| PspGI | CCWGG | 3 cut(s) | 93, 123, 544 |
| PspN4I | GGNNCC | 5 cut(s) | 17, 45, 254, 487, 529 |
| PspPI | GGNCC | 4 cut(s) | 16, 471, 486, 528 |
| PspPPI | RGGWCCY | 2 cut(s) | 486, 528 |
| PvuII | CAGCTG | 2 cut(s) | 160, 325 |
| RsaI | GTAC | 1 cut(s) | 113 |
| RsaNI | GTAC | 1 cut(s) | 112 |
| SacII | CCGCGG | 1 cut(s) | 63 |
| SatI | GCNGC | 6 cut(s) | 63, 66, 318, 354, 384, 411 |
| Sau3AI | GATC | 1 cut(s) | 238 |
| Sau96I | GGNCC | 4 cut(s) | 16, 471, 486, 528 |
| SchI | GAGTC | 2 cut(s) | 92, 266 |
| ScrFI | CCNGG | 5 cut(s) | 95, 125, 292, 546, 584 |
| SfaNI | GCATC | 2 cut(s) | 169, 178 |
| Sfr303I | CCGCGG | 1 cut(s) | 63 |
| SgrBI | CCGCGG | 1 cut(s) | 63 |
| SinI | GGWCC | 3 cut(s) | 16, 486, 528 |
| SmlI | CTYRAG | 1 cut(s) | 227 |
| SmoI | CTYRAG | 1 cut(s) | 227 |
| Sse9I | AATT | 1 cut(s) | 119 |
| SspMI | CTAG | 2 cut(s) | 518, 598 |
| StyD4I | CCNGG | 5 cut(s) | 93, 123, 290, 544, 582 |
| StyI | CCWWGG | 4 cut(s) | 51, 165, 474, 517 |
| TaiI | ACGT | 1 cut(s) | 438 |
| TaqII | GACCGA | 1 cut(s) | 419 |
| TasI | AATT | 1 cut(s) | 119 |
| TauI | GCSGC | 5 cut(s) | 65, 68, 356, 386, 413 |
| TscAI | CASTG | 1 cut(s) | 568 |
| TseFI | GTSAC | 1 cut(s) | 55 |
| TseI | GCWGC | 1 cut(s) | 317 |
| Tsp45I | GTSAC | 1 cut(s) | 55 |
| TspRI | CASTG | 1 cut(s) | 568 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 468 |
| VpaK11BI | GGWCC | 3 cut(s) | 16, 486, 528 |
| XapI | RAATTY | 1 cut(s) | 119 |
| XmaJI | CCTAGG | 1 cut(s) | 517 |
| XspI | CTAG | 2 cut(s) | 518, 598 |