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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 43 |
| AccBSI | CCGCTC | 3 cut(s) | 133, 346, 396 |
| AccII | CGCG | 2 cut(s) | 166, 412 |
| AcuI | CTGAAG | 1 cut(s) | 178 |
| AcyI | GRCGYC | 4 cut(s) | 44, 248, 381, 431 |
| AfaI | GTAC | 1 cut(s) | 80 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 268 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 95, 127 |
| AluBI | AGCT | 3 cut(s) | 198, 277, 444 |
| AluI | AGCT | 3 cut(s) | 198, 277, 444 |
| Alw21I | GWGCWC | 1 cut(s) | 279 |
| Alw26I | GTCTC | 2 cut(s) | 302, 322 |
| AoxI | GGCC | 1 cut(s) | 318 |
| ApeKI | GCWGC | 2 cut(s) | 256, 437 |
| AspLEI | GCGC | 2 cut(s) | 46, 168 |
| AsuC2I | CCSGG | 1 cut(s) | 262 |
| BanI | GGYRCC | 1 cut(s) | 43 |
| BanII | GRGCYC | 1 cut(s) | 279 |
| Bbv12I | GWGCWC | 1 cut(s) | 279 |
| BbvI | GCAGC | 1 cut(s) | 268 |
| BccI | CCATC | 1 cut(s) | 129 |
| BceAI | ACGGC | 1 cut(s) | 189 |
| BcnI | CCSGG | 1 cut(s) | 262 |
| BcoDI | GTCTC | 2 cut(s) | 302, 322 |
| BfoI | RGCGCY | 1 cut(s) | 47 |
| BisI | GCNGC | 4 cut(s) | 134, 246, 257, 438 |
| BlsI | GCNGC | 4 cut(s) | 135, 247, 258, 439 |
| Bme1390I | CCNGG | 1 cut(s) | 262 |
| BmiI | GGNNCC | 1 cut(s) | 45 |
| BmrFI | CCNGG | 1 cut(s) | 262 |
| BmsI | GCATC | 1 cut(s) | 23 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 99, 131 |
| BpmI | CTGGAG | 1 cut(s) | 284 |
| Bpu10I | CCTNAGC | 1 cut(s) | 278 |
| BpuMI | CCSGG | 1 cut(s) | 262 |
| BsaHI | GRCGYC | 4 cut(s) | 44, 248, 381, 431 |
| BsaI | GGTCTC | 1 cut(s) | 302 |
| BsaJI | CCNNGG | 2 cut(s) | 260, 321 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 95, 125 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 268 |
| Bse1I | ACTGG | 1 cut(s) | 336 |
| BseDI | CCNNGG | 2 cut(s) | 260, 321 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 268 |
| BseMII | CTCAG | 1 cut(s) | 292 |
| BseNI | ACTGG | 1 cut(s) | 336 |
| BseXI | GCAGC | 1 cut(s) | 268 |
| BseYI | CCCAGC | 1 cut(s) | 136 |
| Bsh1236I | CGCG | 2 cut(s) | 166, 412 |
| BshFI | GGCC | 1 cut(s) | 320 |
| BshNI | GGYRCC | 1 cut(s) | 43 |
| BsiHKAI | GWGCWC | 1 cut(s) | 279 |
| BsiSI | CCGG | 1 cut(s) | 262 |
| BslFI | GGGAC | 2 cut(s) | 363, 413 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 268 |
| BsmAI | GTCTC | 2 cut(s) | 302, 322 |
| BsmFI | GGGAC | 2 cut(s) | 363, 413 |
| BsnI | GGCC | 1 cut(s) | 320 |
| Bso31I | GGTCTC | 1 cut(s) | 302 |
| Bsp1286I | GDGCHC | 1 cut(s) | 279 |
| Bsp143I | GATC | 1 cut(s) | 58 |
| BspANI | GGCC | 1 cut(s) | 320 |
| BspCNI | CTCAG | 1 cut(s) | 291 |
| BspFNI | CGCG | 2 cut(s) | 166, 412 |
| BspHI | TCATGA | 1 cut(s) | 90 |
| BspLI | GGNNCC | 1 cut(s) | 45 |
| BspQI | GCTCTTC | 1 cut(s) | 267 |
| BspT107I | GGYRCC | 1 cut(s) | 43 |
| BspTNI | GGTCTC | 1 cut(s) | 302 |
| BsrBI | CCGCTC | 3 cut(s) | 133, 346, 396 |
| BsrI | ACTGG | 1 cut(s) | 336 |
| BssECI | CCNNGG | 2 cut(s) | 260, 321 |
| BssMI | GATC | 1 cut(s) | 58 |
| BssNI | GRCGYC | 4 cut(s) | 44, 248, 381, 431 |
| BssT1I | CCWWGG | 1 cut(s) | 321 |
| Bst6I | CTCTTC | 2 cut(s) | 122, 267 |
| BstACI | GRCGYC | 4 cut(s) | 44, 248, 381, 431 |
| BstC8I | GCNNGC | 4 cut(s) | 157, 385, 435, 442 |
| BstDEI | CTNAG | 1 cut(s) | 278 |
| BstFNI | CGCG | 2 cut(s) | 166, 412 |
| BstH2I | RGCGCY | 1 cut(s) | 47 |
| BstHHI | GCGC | 2 cut(s) | 46, 168 |
| BstKTI | GATC | 1 cut(s) | 61 |
| BstMAI | GTCTC | 2 cut(s) | 302, 322 |
| BstMBI | GATC | 1 cut(s) | 58 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 165, 393 |
| BstNSI | RCATGY | 1 cut(s) | 85 |
| BstSCI | CCNGG | 1 cut(s) | 260 |
| BstUI | CGCG | 2 cut(s) | 166, 412 |
| BstV1I | GCAGC | 1 cut(s) | 268 |
| BsuRI | GGCC | 1 cut(s) | 320 |
| BtsI | GCAGTG | 1 cut(s) | 33 |
| BtsIMutI | CAGTG | 2 cut(s) | 33, 61 |
| Cac8I | GCNNGC | 4 cut(s) | 157, 385, 435, 442 |
| CciI | TCATGA | 1 cut(s) | 90 |
| CfoI | GCGC | 2 cut(s) | 46, 168 |
| CseI | GACGC | 3 cut(s) | 237, 389, 439 |
| Csp6I | GTAC | 1 cut(s) | 79 |
| CviAII | CATG | 2 cut(s) | 82, 91 |
| CviJI | RGCY | 6 cut(s) | 136, 198, 259, 277, 320, 444 |
| CviKI_1 | RGCY | 6 cut(s) | 136, 198, 259, 277, 320, 444 |
| CviQI | GTAC | 1 cut(s) | 79 |
| DdeI | CTNAG | 1 cut(s) | 278 |
| DinI | GGCGCC | 1 cut(s) | 45 |
| DpnI | GATC | 1 cut(s) | 60 |
| DpnII | GATC | 1 cut(s) | 58 |
| Eam1104I | CTCTTC | 2 cut(s) | 122, 267 |
| EarI | CTCTTC | 2 cut(s) | 122, 267 |
| EciI | GGCGGA | 4 cut(s) | 47, 329, 350, 377 |
| Ecl136II | GAGCTC | 1 cut(s) | 277 |
| Eco130I | CCWWGG | 1 cut(s) | 321 |
| Eco24I | GRGCYC | 1 cut(s) | 279 |
| Eco31I | GGTCTC | 1 cut(s) | 302 |
| Eco53kI | GAGCTC | 1 cut(s) | 277 |
| Eco57I | CTGAAG | 1 cut(s) | 178 |
| EcoICRI | GAGCTC | 1 cut(s) | 277 |
| EcoT14I | CCWWGG | 1 cut(s) | 321 |
| EcoT38I | GRGCYC | 1 cut(s) | 279 |
| EgeI | GGCGCC | 1 cut(s) | 45 |
| EheI | GGCGCC | 1 cut(s) | 45 |
| ErhI | CCWWGG | 1 cut(s) | 321 |
| FaeI | CATG | 2 cut(s) | 85, 94 |
| FaiI | YATR | 6 cut(s) | 83, 92, 161, 236, 375, 425 |
| FaqI | GGGAC | 2 cut(s) | 363, 413 |
| FatI | CATG | 2 cut(s) | 81, 90 |
| FauI | CCCGC | 6 cut(s) | 148, 214, 339, 389, 392, 442 |
| Fnu4HI | GCNGC | 4 cut(s) | 134, 246, 257, 438 |
| FriOI | GRGCYC | 1 cut(s) | 279 |
| Fsp4HI | GCNGC | 4 cut(s) | 134, 246, 257, 438 |
| GlaI | GCGC | 2 cut(s) | 45, 167 |
| GluI | GCNGC | 4 cut(s) | 134, 246, 257, 438 |
| GsaI | CCCAGC | 1 cut(s) | 140 |
| GsuI | CTGGAG | 1 cut(s) | 284 |
| HaeII | RGCGCY | 1 cut(s) | 47 |
| HaeIII | GGCC | 1 cut(s) | 320 |
| HapII | CCGG | 1 cut(s) | 262 |
| HgaI | GACGC | 3 cut(s) | 237, 389, 439 |
| HhaI | GCGC | 2 cut(s) | 46, 168 |
| Hin1I | GRCGYC | 4 cut(s) | 44, 248, 381, 431 |
| Hin1II | CATG | 2 cut(s) | 85, 94 |
| Hin6I | GCGC | 2 cut(s) | 44, 166 |
| HinP1I | GCGC | 2 cut(s) | 44, 166 |
| HincII | GTYRAC | 1 cut(s) | 408 |
| HindII | GTYRAC | 1 cut(s) | 408 |
| HinfI | GANTC | 1 cut(s) | 65 |
| HpaII | CCGG | 1 cut(s) | 262 |
| Hpy166II | GTNNAC | 1 cut(s) | 408 |
| Hpy188I | TCNGA | 1 cut(s) | 293 |
| Hpy188III | TCNNGA | 3 cut(s) | 62, 91, 301 |
| Hpy8I | GTNNAC | 1 cut(s) | 408 |
| Hpy99I | CGWCG | 1 cut(s) | 175 |
| HpyAV | CCTTC | 4 cut(s) | 13, 79, 92, 202 |
| HpyCH4V | TGCA | 1 cut(s) | 26 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 165, 393 |
| HpyF3I | CTNAG | 1 cut(s) | 278 |
| Hsp92I | GRCGYC | 4 cut(s) | 44, 248, 381, 431 |
| Hsp92II | CATG | 2 cut(s) | 85, 94 |
| HspAI | GCGC | 2 cut(s) | 44, 166 |
| KasI | GGCGCC | 1 cut(s) | 43 |
| Kzo9I | GATC | 1 cut(s) | 58 |
| LguI | GCTCTTC | 1 cut(s) | 267 |
| LmnI | GCTCC | 1 cut(s) | 103 |
| LpnPI | CCDG | 8 cut(s) | 47, 122, 137, 265, 275, 314, 317, 373 |
| Lsp1109I | GCAGC | 1 cut(s) | 268 |
| LweI | GCATC | 1 cut(s) | 23 |
| MaeIII | GTNAC | 1 cut(s) | 225 |
| MalI | GATC | 1 cut(s) | 60 |
| MbiI | CCGCTC | 3 cut(s) | 133, 346, 396 |
| MboI | GATC | 1 cut(s) | 58 |
| MboII | GAAGA | 2 cut(s) | 109, 284 |
| MfeI | CAATTG | 1 cut(s) | 177 |
| MhlI | GDGCHC | 1 cut(s) | 279 |
| MluCI | AATT | 1 cut(s) | 177 |
| Mly113I | GGCGCC | 1 cut(s) | 44 |
| MlyI | GAGTC | 1 cut(s) | 59 |
| MnlI | CCTC | 8 cut(s) | 28, 34, 125, 262, 287, 297, 310, 331 |
| MslI | CAYNNNNRTG | 1 cut(s) | 126 |
| MspA1I | CMGCKG | 1 cut(s) | 387 |
| MspI | CCGG | 1 cut(s) | 262 |
| MspR9I | CCNGG | 1 cut(s) | 262 |
| MunI | CAATTG | 1 cut(s) | 177 |
| MvnI | CGCG | 2 cut(s) | 166, 412 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 165, 393 |
| NarI | GGCGCC | 1 cut(s) | 44 |
| NciI | CCSGG | 1 cut(s) | 262 |
| NdeII | GATC | 1 cut(s) | 58 |
| NlaIII | CATG | 2 cut(s) | 85, 94 |
| NlaIV | GGNNCC | 1 cut(s) | 45 |
| NmeAIII | GCCGAG | 2 cut(s) | 100, 179 |
| NspI | RCATGY | 1 cut(s) | 85 |
| PagI | TCATGA | 1 cut(s) | 90 |
| PciSI | GCTCTTC | 1 cut(s) | 267 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 237 |
| PkrI | GCNGC | 4 cut(s) | 135, 247, 258, 439 |
| PleI | GAGTC | 1 cut(s) | 59 |
| PluTI | GGCGCC | 1 cut(s) | 47 |
| PpsI | GAGTC | 1 cut(s) | 59 |
| Psp124BI | GAGCTC | 1 cut(s) | 279 |
| PspFI | CCCAGC | 1 cut(s) | 136 |
| PspN4I | GGNNCC | 1 cut(s) | 45 |
| RsaI | GTAC | 1 cut(s) | 80 |
| RsaNI | GTAC | 1 cut(s) | 79 |
| RseI | CAYNNNNRTG | 1 cut(s) | 126 |
| SacI | GAGCTC | 1 cut(s) | 279 |
| SapI | GCTCTTC | 1 cut(s) | 267 |
| SatI | GCNGC | 4 cut(s) | 134, 246, 257, 438 |
| Sau3AI | GATC | 1 cut(s) | 58 |
| SchI | GAGTC | 1 cut(s) | 59 |
| ScrFI | CCNGG | 1 cut(s) | 262 |
| SduI | GDGCHC | 1 cut(s) | 279 |
| SetI | ASST | 6 cut(s) | 24, 200, 279, 298, 342, 446 |
| SfaNI | GCATC | 1 cut(s) | 23 |
| SfoI | GGCGCC | 1 cut(s) | 45 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 126 |
| Sse9I | AATT | 1 cut(s) | 177 |
| SspDI | GGCGCC | 1 cut(s) | 43 |
| SstI | GAGCTC | 1 cut(s) | 279 |
| StyD4I | CCNGG | 1 cut(s) | 260 |
| StyI | CCWWGG | 1 cut(s) | 321 |
| TaqI | TCGA | 3 cut(s) | 17, 342, 392 |
| TasI | AATT | 1 cut(s) | 177 |
| TatI | WGTACW | 1 cut(s) | 78 |
| TauI | GCSGC | 2 cut(s) | 136, 248 |
| TscAI | CASTG | 2 cut(s) | 33, 61 |
| TseI | GCWGC | 2 cut(s) | 256, 437 |
| TspDTI | ATGAA | 1 cut(s) | 79 |
| TspRI | CASTG | 2 cut(s) | 33, 61 |
| XceI | RCATGY | 1 cut(s) | 85 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 328 |