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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 174, 442 |
| AccI | GTMKAC | 1 cut(s) | 672 |
| AccII | CGCG | 3 cut(s) | 554, 556, 762 |
| AccIII | TCCGGA | 1 cut(s) | 97 |
| AclWI | GGATC | 2 cut(s) | 183, 196 |
| AcuI | CTGAAG | 3 cut(s) | 180, 345, 884 |
| AfaI | GTAC | 1 cut(s) | 383 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 161, 208, 296, 529, 685 |
| AgsI | TTSAA | 3 cut(s) | 536, 715, 791 |
| AjnI | CCWGG | 4 cut(s) | 84, 218, 345, 411 |
| AleI | CACNNNNGTG | 1 cut(s) | 744 |
| AluBI | AGCT | 6 cut(s) | 32, 148, 406, 460, 502, 520 |
| AluI | AGCT | 6 cut(s) | 32, 148, 406, 460, 502, 520 |
| Alw26I | GTCTC | 3 cut(s) | 86, 217, 473 |
| AlwI | GGATC | 2 cut(s) | 183, 196 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 73, 523 |
| Aor13HI | TCCGGA | 1 cut(s) | 97 |
| AoxI | GGCC | 4 cut(s) | 247, 372, 495, 768 |
| ApaI | GGGCCC | 1 cut(s) | 251 |
| ApeKI | GCWGC | 7 cut(s) | 29, 265, 307, 517, 583, 842, 845 |
| AspLEI | GCGC | 3 cut(s) | 556, 762, 764 |
| AspS9I | GGNCC | 2 cut(s) | 247, 248 |
| AsuC2I | CCSGG | 1 cut(s) | 473 |
| AxyI | CCTNAGG | 1 cut(s) | 432 |
| BaeGI | GKGCMC | 1 cut(s) | 251 |
| BamHI | GGATCC | 1 cut(s) | 188 |
| BanII | GRGCYC | 1 cut(s) | 251 |
| BauI | CACGAG | 1 cut(s) | 401 |
| BbsI | GAAGAC | 1 cut(s) | 348 |
| BbvI | GCAGC | 7 cut(s) | 41, 277, 294, 529, 595, 829, 832 |
| BccI | CCATC | 1 cut(s) | 814 |
| BceAI | ACGGC | 2 cut(s) | 100, 758 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 174, 208 |
| BciT130I | CCWGG | 4 cut(s) | 86, 220, 347, 413 |
| BciVI | GTATCC | 1 cut(s) | 171 |
| BcnI | CCSGG | 1 cut(s) | 473 |
| BcoDI | GTCTC | 3 cut(s) | 86, 217, 473 |
| BfaI | CTAG | 1 cut(s) | 901 |
| BfuI | GTATCC | 1 cut(s) | 171 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 503 |
| Bme1390I | CCNGG | 5 cut(s) | 86, 220, 347, 413, 473 |
| BmgT120I | GGNCC | 2 cut(s) | 247, 248 |
| BmiI | GGNNCC | 3 cut(s) | 190, 249, 250 |
| BmrFI | CCNGG | 5 cut(s) | 86, 220, 347, 413, 473 |
| BmsI | GCATC | 4 cut(s) | 141, 532, 849, 885 |
| BpiI | GAAGAC | 1 cut(s) | 348 |
| BpmI | CTGGAG | 3 cut(s) | 665, 743, 875 |
| BpuEI | CTTGAG | 3 cut(s) | 35, 611, 638 |
| BpuMI | CCSGG | 1 cut(s) | 473 |
| BsaAI | YACGTR | 1 cut(s) | 742 |
| BsaBI | GATNNNNATC | 1 cut(s) | 807 |
| BsaI | GGTCTC | 1 cut(s) | 473 |
| BsaJI | CCNNGG | 7 cut(s) | 141, 218, 390, 472, 528, 657, 765 |
| BsaWI | WCCGGW | 1 cut(s) | 97 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 92, 122, 214, 244 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 161, 208, 296, 529, 685 |
| Bse118I | RCCGGY | 2 cut(s) | 154, 282 |
| Bse1I | ACTGG | 1 cut(s) | 186 |
| Bse21I | CCTNAGG | 1 cut(s) | 432 |
| Bse3DI | GCAATG | 2 cut(s) | 129, 290 |
| Bse8I | GATNNNNATC | 1 cut(s) | 807 |
| BseAI | TCCGGA | 1 cut(s) | 97 |
| BseBI | CCWGG | 4 cut(s) | 86, 220, 347, 413 |
| BseDI | CCNNGG | 7 cut(s) | 141, 218, 390, 472, 528, 657, 765 |
| BseGI | GGATG | 1 cut(s) | 675 |
| BseJI | GATNNNNATC | 1 cut(s) | 807 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 161, 208, 296, 529, 685 |
| BseMI | GCAATG | 2 cut(s) | 129, 290 |
| BseMII | CTCAG | 2 cut(s) | 720, 741 |
| BseNI | ACTGG | 1 cut(s) | 186 |
| BsePI | GCGCGC | 1 cut(s) | 760 |
| BseRI | GAGGAG | 3 cut(s) | 116, 158, 470 |
| BseSI | GKGCMC | 1 cut(s) | 251 |
| BseXI | GCAGC | 7 cut(s) | 41, 277, 294, 529, 595, 829, 832 |
| BseYI | CCCAGC | 1 cut(s) | 32 |
| BsgI | GTGCAG | 1 cut(s) | 512 |
| Bsh1236I | CGCG | 3 cut(s) | 554, 556, 762 |
| BshFI | GGCC | 4 cut(s) | 249, 374, 497, 770 |
| BsiSI | CCGG | 4 cut(s) | 98, 155, 283, 472 |
| BslFI | GGGAC | 1 cut(s) | 225 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 161, 208, 296, 529, 685 |
| BsmAI | GTCTC | 3 cut(s) | 86, 217, 473 |
| BsmFI | GGGAC | 1 cut(s) | 225 |
| BsnI | GGCC | 4 cut(s) | 249, 374, 497, 770 |
| Bso31I | GGTCTC | 1 cut(s) | 473 |
| Bsp120I | GGGCCC | 1 cut(s) | 247 |
| Bsp1286I | GDGCHC | 1 cut(s) | 251 |
| Bsp13I | TCCGGA | 1 cut(s) | 97 |
| Bsp143I | GATC | 1 cut(s) | 188 |
| BspANI | GGCC | 4 cut(s) | 249, 374, 497, 770 |
| BspCNI | CTCAG | 2 cut(s) | 721, 742 |
| BspEI | TCCGGA | 1 cut(s) | 97 |
| BspFNI | CGCG | 3 cut(s) | 554, 556, 762 |
| BspLI | GGNNCC | 3 cut(s) | 190, 249, 250 |
| BspPI | GGATC | 2 cut(s) | 183, 196 |
| BspTNI | GGTCTC | 1 cut(s) | 473 |
| BsrBI | CCGCTC | 2 cut(s) | 174, 442 |
| BsrDI | GCAATG | 2 cut(s) | 129, 290 |
| BsrFI | RCCGGY | 2 cut(s) | 154, 282 |
| BsrI | ACTGG | 1 cut(s) | 186 |
| BssAI | RCCGGY | 2 cut(s) | 154, 282 |
| BssECI | CCNNGG | 7 cut(s) | 141, 218, 390, 472, 528, 657, 765 |
| BssHII | GCGCGC | 1 cut(s) | 760 |
| BssMI | GATC | 1 cut(s) | 188 |
| BssSI | CACGAG | 1 cut(s) | 401 |
| BssT1I | CCWWGG | 2 cut(s) | 528, 657 |
| Bst2BI | CACGAG | 1 cut(s) | 401 |
| Bst2UI | CCWGG | 4 cut(s) | 86, 220, 347, 413 |
| Bst4CI | ACNGT | 1 cut(s) | 355 |
| Bst6I | CTCTTC | 2 cut(s) | 321, 710 |
| BstBAI | YACGTR | 1 cut(s) | 742 |
| BstC8I | GCNNGC | 5 cut(s) | 75, 156, 495, 504, 762 |
| BstDEI | CTNAG | 3 cut(s) | 432, 729, 750 |
| BstDSI | CCRYGG | 1 cut(s) | 390 |
| BstEII | GGTNACC | 2 cut(s) | 285, 349 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 527 |
| BstF5I | GGATG | 1 cut(s) | 675 |
| BstFNI | CGCG | 3 cut(s) | 554, 556, 762 |
| BstHHI | GCGC | 3 cut(s) | 556, 762, 764 |
| BstKTI | GATC | 1 cut(s) | 191 |
| BstMAI | GTCTC | 3 cut(s) | 86, 217, 473 |
| BstMBI | GATC | 1 cut(s) | 188 |
| BstNI | CCWGG | 4 cut(s) | 86, 220, 347, 413 |
| BstNSI | RCATGY | 1 cut(s) | 25 |
| BstPI | GGTNACC | 2 cut(s) | 285, 349 |
| BstSCI | CCNGG | 5 cut(s) | 84, 218, 345, 411, 471 |
| BstSLI | GKGCMC | 1 cut(s) | 251 |
| BstUI | CGCG | 3 cut(s) | 554, 556, 762 |
| BstV1I | GCAGC | 7 cut(s) | 41, 277, 294, 529, 595, 829, 832 |
| BstV2I | GAAGAC | 1 cut(s) | 348 |
| BstX2I | RGATCY | 1 cut(s) | 188 |
| BstYI | RGATCY | 1 cut(s) | 188 |
| Bsu36I | CCTNAGG | 1 cut(s) | 432 |
| BsuI | GTATCC | 1 cut(s) | 171 |
| BsuRI | GGCC | 4 cut(s) | 249, 374, 497, 770 |
| BtgI | CCRYGG | 1 cut(s) | 390 |
| BtgZI | GCGATG | 1 cut(s) | 92 |
| BtsCI | GGATG | 1 cut(s) | 675 |
| BtsIMutI | CAGTG | 1 cut(s) | 321 |
| Cac8I | GCNNGC | 5 cut(s) | 75, 156, 495, 504, 762 |
| CaiI | CAGNNNCTG | 2 cut(s) | 73, 523 |
| CfoI | GCGC | 3 cut(s) | 556, 762, 764 |
| Cfr10I | RCCGGY | 2 cut(s) | 154, 282 |
| Cfr13I | GGNCC | 2 cut(s) | 247, 248 |
| CseI | GACGC | 4 cut(s) | 79, 375, 560, 885 |
| CsiI | ACCWGGT | 1 cut(s) | 345 |
| Csp6I | GTAC | 1 cut(s) | 382 |
| CviAII | CATG | 2 cut(s) | 22, 817 |
| CviQI | GTAC | 1 cut(s) | 382 |
| DdeI | CTNAG | 3 cut(s) | 432, 729, 750 |
| DpnI | GATC | 1 cut(s) | 190 |
| DpnII | GATC | 1 cut(s) | 188 |
| Eam1104I | CTCTTC | 2 cut(s) | 321, 710 |
| EarI | CTCTTC | 2 cut(s) | 321, 710 |
| EciI | GGCGGA | 2 cut(s) | 255, 521 |
| Eco130I | CCWWGG | 2 cut(s) | 528, 657 |
| Eco24I | GRGCYC | 1 cut(s) | 251 |
| Eco31I | GGTCTC | 1 cut(s) | 473 |
| Eco57I | CTGAAG | 3 cut(s) | 180, 345, 884 |
| Eco81I | CCTNAGG | 1 cut(s) | 432 |
| Eco91I | GGTNACC | 2 cut(s) | 285, 349 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 527 |
| EcoO109I | RGGNCCY | 2 cut(s) | 247, 248 |
| EcoO65I | GGTNACC | 2 cut(s) | 285, 349 |
| EcoRII | CCWGG | 4 cut(s) | 84, 218, 345, 411 |
| EcoT14I | CCWWGG | 2 cut(s) | 528, 657 |
| EcoT38I | GRGCYC | 1 cut(s) | 251 |
| ErhI | CCWWGG | 2 cut(s) | 528, 657 |
| FaeI | CATG | 2 cut(s) | 25, 820 |
| FaiI | YATR | 6 cut(s) | 23, 27, 629, 635, 800, 818 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 29 |
| FaqI | GGGAC | 1 cut(s) | 225 |
| FatI | CATG | 2 cut(s) | 21, 816 |
| FauI | CCCGC | 3 cut(s) | 167, 288, 678 |
| FblI | GTMKAC | 1 cut(s) | 672 |
| FokI | GGATG | 1 cut(s) | 662 |
| FriOI | GRGCYC | 1 cut(s) | 251 |
| FspBI | CTAG | 1 cut(s) | 901 |
| GlaI | GCGC | 3 cut(s) | 555, 761, 763 |
| GsaI | CCCAGC | 1 cut(s) | 36 |
| GsuI | CTGGAG | 3 cut(s) | 665, 743, 875 |
| HaeIII | GGCC | 4 cut(s) | 249, 374, 497, 770 |
| HapII | CCGG | 4 cut(s) | 98, 155, 283, 472 |
| HgaI | GACGC | 4 cut(s) | 79, 375, 560, 885 |
| HhaI | GCGC | 3 cut(s) | 556, 762, 764 |
| Hin1II | CATG | 2 cut(s) | 25, 820 |
| Hin6I | GCGC | 3 cut(s) | 554, 760, 762 |
| HinP1I | GCGC | 3 cut(s) | 554, 760, 762 |
| HincII | GTYRAC | 1 cut(s) | 673 |
| HindII | GTYRAC | 1 cut(s) | 673 |
| HinfI | GANTC | 2 cut(s) | 94, 725 |
| HpaII | CCGG | 4 cut(s) | 98, 155, 283, 472 |
| Hpy166II | GTNNAC | 1 cut(s) | 673 |
| Hpy188I | TCNGA | 1 cut(s) | 730 |
| Hpy188III | TCNNGA | 5 cut(s) | 14, 98, 523, 548, 854 |
| Hpy8I | GTNNAC | 1 cut(s) | 673 |
| Hpy99I | CGWCG | 2 cut(s) | 674, 779 |
| HpyAV | CCTTC | 4 cut(s) | 155, 385, 458, 748 |
| HpyCH4III | ACNGT | 1 cut(s) | 355 |
| HpyCH4IV | ACGT | 2 cut(s) | 669, 741 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 29, 310, 400, 493 |
| HpyF3I | CTNAG | 3 cut(s) | 432, 729, 750 |
| HpySE526I | ACGT | 2 cut(s) | 669, 741 |
| Hsp92II | CATG | 2 cut(s) | 25, 820 |
| HspAI | GCGC | 3 cut(s) | 554, 760, 762 |
| Kpn2I | TCCGGA | 1 cut(s) | 97 |
| KroI | GCCGGC | 1 cut(s) | 154 |
| KroNI | GCCGGC | 1 cut(s) | 156 |
| Kzo9I | GATC | 1 cut(s) | 188 |
| LmnI | GCTCC | 6 cut(s) | 145, 171, 457, 525, 643, 757 |
| Lsp1109I | GCAGC | 7 cut(s) | 41, 277, 294, 529, 595, 829, 832 |
| LweI | GCATC | 4 cut(s) | 141, 532, 849, 885 |
| MabI | ACCWGGT | 1 cut(s) | 345 |
| MaeI | CTAG | 1 cut(s) | 901 |
| MaeII | ACGT | 2 cut(s) | 669, 741 |
| MaeIII | GTNAC | 2 cut(s) | 285, 349 |
| MalI | GATC | 1 cut(s) | 190 |
| MbiI | CCGCTC | 2 cut(s) | 174, 442 |
| MboI | GATC | 1 cut(s) | 188 |
| MboII | GAAGA | 4 cut(s) | 338, 353, 497, 727 |
| MflI | RGATCY | 1 cut(s) | 188 |
| MhlI | GDGCHC | 1 cut(s) | 251 |
| MluCI | AATT | 3 cut(s) | 563, 710, 794 |
| MlyI | GAGTC | 2 cut(s) | 88, 734 |
| MmeI | TCCRAC | 1 cut(s) | 462 |
| MroI | TCCGGA | 1 cut(s) | 97 |
| MroNI | GCCGGC | 1 cut(s) | 154 |
| MseI | TTAA | 3 cut(s) | 60, 197, 609 |
| MslI | CAYNNNNRTG | 2 cut(s) | 632, 744 |
| MspA1I | CMGCKG | 3 cut(s) | 32, 268, 685 |
| MspI | CCGG | 4 cut(s) | 98, 155, 283, 472 |
| MspR9I | CCNGG | 5 cut(s) | 86, 220, 347, 413, 473 |
| MvaI | CCWGG | 4 cut(s) | 86, 220, 347, 413 |
| MvnI | CGCG | 3 cut(s) | 554, 556, 762 |
| NaeI | GCCGGC | 1 cut(s) | 156 |
| NciI | CCSGG | 1 cut(s) | 473 |
| NdeII | GATC | 1 cut(s) | 188 |
| NgoMIV | GCCGGC | 1 cut(s) | 154 |
| NlaIII | CATG | 2 cut(s) | 25, 820 |
| NlaIV | GGNNCC | 3 cut(s) | 190, 249, 250 |
| NmeAIII | GCCGAG | 3 cut(s) | 166, 350, 790 |
| NspI | RCATGY | 1 cut(s) | 25 |
| OliI | CACNNNNGTG | 1 cut(s) | 744 |
| PauI | GCGCGC | 1 cut(s) | 760 |
| PdiI | GCCGGC | 1 cut(s) | 156 |
| PflFI | GACNNNGTC | 1 cut(s) | 228 |
| PleI | GAGTC | 2 cut(s) | 88, 733 |
| PpsI | GAGTC | 2 cut(s) | 88, 733 |
| Ppu21I | YACGTR | 1 cut(s) | 742 |
| Psp6I | CCWGG | 4 cut(s) | 84, 218, 345, 411 |
| PspEI | GGTNACC | 2 cut(s) | 285, 349 |
| PspFI | CCCAGC | 1 cut(s) | 32 |
| PspGI | CCWGG | 4 cut(s) | 84, 218, 345, 411 |
| PspN4I | GGNNCC | 3 cut(s) | 190, 249, 250 |
| PspOMI | GGGCCC | 1 cut(s) | 247 |
| PspPI | GGNCC | 2 cut(s) | 247, 248 |
| PstNI | CAGNNNCTG | 2 cut(s) | 73, 523 |
| PsuI | RGATCY | 1 cut(s) | 188 |
| PsyI | GACNNNGTC | 1 cut(s) | 228 |
| PteI | GCGCGC | 1 cut(s) | 760 |
| PvuII | CAGCTG | 1 cut(s) | 32 |
| RsaI | GTAC | 1 cut(s) | 383 |
| RsaNI | GTAC | 1 cut(s) | 382 |
| RseI | CAYNNNNRTG | 2 cut(s) | 632, 744 |
| SalI | GTCGAC | 1 cut(s) | 671 |
| SaqAI | TTAA | 3 cut(s) | 60, 197, 609 |
| Sau3AI | GATC | 1 cut(s) | 188 |
| Sau96I | GGNCC | 2 cut(s) | 247, 248 |
| SchI | GAGTC | 2 cut(s) | 88, 734 |
| ScrFI | CCNGG | 5 cut(s) | 86, 220, 347, 413, 473 |
| SduI | GDGCHC | 1 cut(s) | 251 |
| SexAI | ACCWGGT | 1 cut(s) | 345 |
| SfaNI | GCATC | 4 cut(s) | 141, 532, 849, 885 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 632, 744 |
| SmlI | CTYRAG | 3 cut(s) | 14, 590, 617 |
| SmoI | CTYRAG | 3 cut(s) | 14, 590, 617 |
| Sse9I | AATT | 3 cut(s) | 563, 710, 794 |
| SspMI | CTAG | 1 cut(s) | 901 |
| StyD4I | CCNGG | 5 cut(s) | 84, 218, 345, 411, 471 |
| StyI | CCWWGG | 2 cut(s) | 528, 657 |
| TaaI | ACNGT | 1 cut(s) | 355 |
| TaiI | ACGT | 2 cut(s) | 672, 744 |
| TaqI | TCGA | 1 cut(s) | 672 |
| TasI | AATT | 3 cut(s) | 563, 710, 794 |
| TauI | GCSGC | 5 cut(s) | 271, 445, 698, 773, 830 |
| Tru1I | TTAA | 3 cut(s) | 60, 197, 609 |
| Tru9I | TTAA | 3 cut(s) | 60, 197, 609 |
| TscAI | CASTG | 1 cut(s) | 328 |
| TseI | GCWGC | 7 cut(s) | 29, 265, 307, 517, 583, 842, 845 |
| TspDTI | ATGAA | 1 cut(s) | 95 |
| TspGWI | ACGGA | 1 cut(s) | 379 |
| TspRI | CASTG | 1 cut(s) | 328 |
| Tth111I | GACNNNGTC | 1 cut(s) | 228 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 527 |
| XceI | RCATGY | 1 cut(s) | 25 |
| XmiI | GTMKAC | 1 cut(s) | 672 |
| XspI | CTAG | 1 cut(s) | 901 |