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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 313 |
| Acc36I | ACCTGC | 2 cut(s) | 175, 313 |
| AccB1I | GGYRCC | 3 cut(s) | 303, 349, 398 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 201 |
| AccI | GTMKAC | 1 cut(s) | 557 |
| AccII | CGCG | 2 cut(s) | 568, 570 |
| AclWI | GGATC | 1 cut(s) | 145 |
| AcoI | YGGCCR | 1 cut(s) | 21 |
| AcsI | RAATTY | 1 cut(s) | 367 |
| AcyI | GRCGYC | 2 cut(s) | 205, 350 |
| AfaI | GTAC | 1 cut(s) | 296 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 201, 343, 346, 420, 494, 524 |
| AgsI | TTSAA | 2 cut(s) | 373, 445 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 382 |
| AjnI | CCWGG | 3 cut(s) | 18, 342, 389 |
| AluBI | AGCT | 1 cut(s) | 358 |
| AluI | AGCT | 1 cut(s) | 358 |
| AlwI | GGATC | 1 cut(s) | 145 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 154 |
| AoxI | GGCC | 4 cut(s) | 21, 102, 233, 546 |
| ApoI | RAATTY | 1 cut(s) | 367 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 377 |
| AspLEI | GCGC | 4 cut(s) | 220, 352, 457, 570 |
| AspS9I | GGNCC | 2 cut(s) | 234, 254 |
| AsuHPI | GGTGA | 2 cut(s) | 43, 337 |
| AvaII | GGWCC | 1 cut(s) | 254 |
| BaeGI | GKGCMC | 1 cut(s) | 401 |
| BanI | GGYRCC | 3 cut(s) | 303, 349, 398 |
| BccI | CCATC | 2 cut(s) | 113, 208 |
| BceAI | ACGGC | 1 cut(s) | 432 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 256, 290 |
| BciT130I | CCWGG | 3 cut(s) | 20, 344, 391 |
| BfoI | RGCGCY | 3 cut(s) | 221, 353, 458 |
| BfuAI | ACCTGC | 2 cut(s) | 175, 313 |
| BisI | GCNGC | 4 cut(s) | 90, 337, 340, 529 |
| BlsI | GCNGC | 4 cut(s) | 91, 338, 341, 530 |
| Bme1390I | CCNGG | 3 cut(s) | 20, 344, 391 |
| Bme18I | GGWCC | 1 cut(s) | 254 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 382 |
| BmgT120I | GGNCC | 2 cut(s) | 234, 254 |
| BmiI | GGNNCC | 4 cut(s) | 255, 305, 351, 400 |
| BmrFI | CCNGG | 3 cut(s) | 20, 344, 391 |
| BpmI | CTGGAG | 1 cut(s) | 131 |
| Bpu10I | CCTNAGC | 1 cut(s) | 354 |
| BpuEI | CTTGAG | 1 cut(s) | 352 |
| BsaAI | YACGTR | 1 cut(s) | 298 |
| BsaHI | GRCGYC | 2 cut(s) | 205, 350 |
| BsaJI | CCNNGG | 6 cut(s) | 54, 115, 307, 343, 414, 493 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 201, 343, 346, 420, 494, 524 |
| Bse1I | ACTGG | 1 cut(s) | 323 |
| Bse3DI | GCAATG | 1 cut(s) | 171 |
| BseBI | CCWGG | 3 cut(s) | 20, 344, 391 |
| BseDI | CCNNGG | 6 cut(s) | 54, 115, 307, 343, 414, 493 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 201, 343, 346, 420, 494, 524 |
| BseMI | GCAATG | 1 cut(s) | 171 |
| BseNI | ACTGG | 1 cut(s) | 323 |
| BseSI | GKGCMC | 1 cut(s) | 401 |
| Bsh1236I | CGCG | 2 cut(s) | 568, 570 |
| Bsh1285I | CGRYCG | 1 cut(s) | 51 |
| BshFI | GGCC | 4 cut(s) | 23, 104, 235, 548 |
| BshNI | GGYRCC | 3 cut(s) | 303, 349, 398 |
| BsiEI | CGRYCG | 1 cut(s) | 51 |
| BsiSI | CCGG | 1 cut(s) | 24 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 201, 343, 346, 420, 494, 524 |
| BsnI | GGCC | 4 cut(s) | 23, 104, 235, 548 |
| Bsp1286I | GDGCHC | 1 cut(s) | 401 |
| Bsp143I | GATC | 3 cut(s) | 48, 150, 506 |
| BspANI | GGCC | 4 cut(s) | 23, 104, 235, 548 |
| BspFNI | CGCG | 2 cut(s) | 568, 570 |
| BspLI | GGNNCC | 4 cut(s) | 255, 305, 351, 400 |
| BspMI | ACCTGC | 2 cut(s) | 175, 313 |
| BspPI | GGATC | 1 cut(s) | 145 |
| BspT107I | GGYRCC | 3 cut(s) | 303, 349, 398 |
| BsrDI | GCAATG | 1 cut(s) | 171 |
| BsrI | ACTGG | 1 cut(s) | 323 |
| BssECI | CCNNGG | 6 cut(s) | 54, 115, 307, 343, 414, 493 |
| BssMI | GATC | 3 cut(s) | 48, 150, 506 |
| BssNAI | GTATAC | 1 cut(s) | 558 |
| BssNI | GRCGYC | 2 cut(s) | 205, 350 |
| BssT1I | CCWWGG | 3 cut(s) | 115, 307, 493 |
| Bst1107I | GTATAC | 1 cut(s) | 558 |
| Bst2UI | CCWGG | 3 cut(s) | 20, 344, 391 |
| Bst6I | CTCTTC | 1 cut(s) | 570 |
| BstACI | GRCGYC | 2 cut(s) | 205, 350 |
| BstBAI | YACGTR | 1 cut(s) | 298 |
| BstC8I | GCNNGC | 1 cut(s) | 78 |
| BstDEI | CTNAG | 1 cut(s) | 354 |
| BstDSI | CCRYGG | 1 cut(s) | 414 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 492 |
| BstFNI | CGCG | 2 cut(s) | 568, 570 |
| BstH2I | RGCGCY | 3 cut(s) | 221, 353, 458 |
| BstHHI | GCGC | 4 cut(s) | 220, 352, 457, 570 |
| BstKTI | GATC | 3 cut(s) | 51, 153, 509 |
| BstMBI | GATC | 3 cut(s) | 48, 150, 506 |
| BstMCI | CGRYCG | 1 cut(s) | 51 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 86, 217, 226 |
| BstNI | CCWGG | 3 cut(s) | 20, 344, 391 |
| BstSCI | CCNGG | 3 cut(s) | 18, 342, 389 |
| BstSLI | GKGCMC | 1 cut(s) | 401 |
| BstUI | CGCG | 2 cut(s) | 568, 570 |
| BstX2I | RGATCY | 1 cut(s) | 150 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 76 |
| BstYI | RGATCY | 1 cut(s) | 150 |
| BstZ17I | GTATAC | 1 cut(s) | 558 |
| BsuRI | GGCC | 4 cut(s) | 23, 104, 235, 548 |
| BtgI | CCRYGG | 1 cut(s) | 414 |
| BveI | ACCTGC | 2 cut(s) | 175, 313 |
| Cac8I | GCNNGC | 1 cut(s) | 78 |
| CaiI | CAGNNNCTG | 1 cut(s) | 154 |
| CfoI | GCGC | 4 cut(s) | 220, 352, 457, 570 |
| Cfr13I | GGNCC | 2 cut(s) | 234, 254 |
| CseI | GACGC | 2 cut(s) | 194, 574 |
| Csp6I | GTAC | 1 cut(s) | 295 |
| CviAII | CATG | 2 cut(s) | 98, 382 |
| CviJI | RGCY | 7 cut(s) | 23, 104, 235, 336, 358, 531, 548 |
| CviKI_1 | RGCY | 7 cut(s) | 23, 104, 235, 336, 358, 531, 548 |
| CviQI | GTAC | 1 cut(s) | 295 |
| DdeI | CTNAG | 1 cut(s) | 354 |
| DinI | GGCGCC | 1 cut(s) | 351 |
| DpnI | GATC | 3 cut(s) | 50, 152, 508 |
| DpnII | GATC | 3 cut(s) | 48, 150, 506 |
| DriI | GACNNNNNGTC | 1 cut(s) | 382 |
| EaeI | YGGCCR | 1 cut(s) | 21 |
| Eam1104I | CTCTTC | 1 cut(s) | 570 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 382 |
| EarI | CTCTTC | 1 cut(s) | 570 |
| EciI | GGCGGA | 2 cut(s) | 5, 33 |
| Eco130I | CCWWGG | 3 cut(s) | 115, 307, 493 |
| Eco47I | GGWCC | 1 cut(s) | 254 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 492 |
| EcoRII | CCWGG | 3 cut(s) | 18, 342, 389 |
| EcoT14I | CCWWGG | 3 cut(s) | 115, 307, 493 |
| EgeI | GGCGCC | 1 cut(s) | 351 |
| EheI | GGCGCC | 1 cut(s) | 351 |
| ErhI | CCWWGG | 3 cut(s) | 115, 307, 493 |
| FaeI | CATG | 2 cut(s) | 101, 385 |
| FaiI | YATR | 8 cut(s) | 87, 99, 160, 200, 232, 285, 383, 558 |
| FatI | CATG | 2 cut(s) | 97, 381 |
| FauI | CCCGC | 1 cut(s) | 387 |
| FblI | GTMKAC | 1 cut(s) | 557 |
| Fnu4HI | GCNGC | 4 cut(s) | 90, 337, 340, 529 |
| Fsp4HI | GCNGC | 4 cut(s) | 90, 337, 340, 529 |
| GlaI | GCGC | 4 cut(s) | 219, 351, 456, 569 |
| GluI | GCNGC | 4 cut(s) | 90, 337, 340, 529 |
| GsuI | CTGGAG | 1 cut(s) | 131 |
| HaeII | RGCGCY | 3 cut(s) | 221, 353, 458 |
| HaeIII | GGCC | 4 cut(s) | 23, 104, 235, 548 |
| HapII | CCGG | 1 cut(s) | 24 |
| HgaI | GACGC | 2 cut(s) | 194, 574 |
| HhaI | GCGC | 4 cut(s) | 220, 352, 457, 570 |
| Hin1I | GRCGYC | 2 cut(s) | 205, 350 |
| Hin1II | CATG | 2 cut(s) | 101, 385 |
| Hin6I | GCGC | 4 cut(s) | 218, 350, 455, 568 |
| HinP1I | GCGC | 4 cut(s) | 218, 350, 455, 568 |
| HpaII | CCGG | 1 cut(s) | 24 |
| HphI | GGTGA | 2 cut(s) | 43, 337 |
| Hpy166II | GTNNAC | 3 cut(s) | 295, 328, 558 |
| Hpy188I | TCNGA | 1 cut(s) | 478 |
| Hpy188III | TCNNGA | 2 cut(s) | 148, 466 |
| Hpy8I | GTNNAC | 3 cut(s) | 295, 328, 558 |
| HpyAV | CCTTC | 3 cut(s) | 262, 367, 412 |
| HpyCH4IV | ACGT | 2 cut(s) | 40, 297 |
| HpyCH4V | TGCA | 2 cut(s) | 277, 315 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 86, 217, 226 |
| HpyF3I | CTNAG | 1 cut(s) | 354 |
| HpySE526I | ACGT | 2 cut(s) | 40, 297 |
| Hsp92I | GRCGYC | 2 cut(s) | 205, 350 |
| Hsp92II | CATG | 2 cut(s) | 101, 385 |
| HspAI | GCGC | 4 cut(s) | 218, 350, 455, 568 |
| KasI | GGCGCC | 1 cut(s) | 349 |
| Kzo9I | GATC | 3 cut(s) | 48, 150, 506 |
| MaeII | ACGT | 2 cut(s) | 40, 297 |
| MaeIII | GTNAC | 3 cut(s) | 36, 121, 409 |
| MalI | GATC | 3 cut(s) | 50, 152, 508 |
| MboI | GATC | 3 cut(s) | 48, 150, 506 |
| MboII | GAAGA | 2 cut(s) | 100, 587 |
| MfeI | CAATTG | 1 cut(s) | 258 |
| MflI | RGATCY | 1 cut(s) | 150 |
| MhlI | GDGCHC | 1 cut(s) | 401 |
| MluCI | AATT | 4 cut(s) | 258, 287, 360, 367 |
| Mly113I | GGCGCC | 1 cut(s) | 350 |
| MmeI | TCCRAC | 2 cut(s) | 456, 508 |
| MnlI | CCTC | 9 cut(s) | 49, 94, 122, 155, 244, 294, 442, 565, 603 |
| MroXI | GAANNNNTTC | 1 cut(s) | 377 |
| MseI | TTAA | 2 cut(s) | 471, 597 |
| MspI | CCGG | 1 cut(s) | 24 |
| MspR9I | CCNGG | 3 cut(s) | 20, 344, 391 |
| MunI | CAATTG | 1 cut(s) | 258 |
| MvaI | CCWGG | 3 cut(s) | 20, 344, 391 |
| MvnI | CGCG | 2 cut(s) | 568, 570 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 86, 217, 226 |
| NarI | GGCGCC | 1 cut(s) | 350 |
| NdeII | GATC | 3 cut(s) | 48, 150, 506 |
| NlaIII | CATG | 2 cut(s) | 101, 385 |
| NlaIV | GGNNCC | 4 cut(s) | 255, 305, 351, 400 |
| NmeAIII | GCCGAG | 1 cut(s) | 79 |
| PaqCI | CACCTGC | 1 cut(s) | 313 |
| PdmI | GAANNNNTTC | 1 cut(s) | 377 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 201 |
| PkrI | GCNGC | 4 cut(s) | 91, 338, 341, 530 |
| Ple19I | CGATCG | 1 cut(s) | 51 |
| PluTI | GGCGCC | 1 cut(s) | 353 |
| Ppu21I | YACGTR | 1 cut(s) | 298 |
| Psp6I | CCWGG | 3 cut(s) | 18, 342, 389 |
| PspGI | CCWGG | 3 cut(s) | 18, 342, 389 |
| PspN4I | GGNNCC | 4 cut(s) | 255, 305, 351, 400 |
| PspPI | GGNCC | 2 cut(s) | 234, 254 |
| PstNI | CAGNNNCTG | 1 cut(s) | 154 |
| PsuI | RGATCY | 1 cut(s) | 150 |
| PvuI | CGATCG | 1 cut(s) | 51 |
| RsaI | GTAC | 1 cut(s) | 296 |
| RsaNI | GTAC | 1 cut(s) | 295 |
| SaqAI | TTAA | 2 cut(s) | 471, 597 |
| SatI | GCNGC | 4 cut(s) | 90, 337, 340, 529 |
| Sau3AI | GATC | 3 cut(s) | 48, 150, 506 |
| Sau96I | GGNCC | 2 cut(s) | 234, 254 |
| ScrFI | CCNGG | 3 cut(s) | 20, 344, 391 |
| SduI | GDGCHC | 1 cut(s) | 401 |
| SfoI | GGCGCC | 1 cut(s) | 351 |
| SinI | GGWCC | 1 cut(s) | 254 |
| SmlI | CTYRAG | 1 cut(s) | 331 |
| SmoI | CTYRAG | 1 cut(s) | 331 |
| Sse9I | AATT | 4 cut(s) | 258, 287, 360, 367 |
| SspDI | GGCGCC | 1 cut(s) | 349 |
| StyD4I | CCNGG | 3 cut(s) | 18, 342, 389 |
| StyI | CCWWGG | 3 cut(s) | 115, 307, 493 |
| TaiI | ACGT | 2 cut(s) | 43, 300 |
| TaqI | TCGA | 1 cut(s) | 505 |
| TasI | AATT | 4 cut(s) | 258, 287, 360, 367 |
| TauI | GCSGC | 4 cut(s) | 92, 339, 342, 531 |
| Tru1I | TTAA | 2 cut(s) | 471, 597 |
| Tru9I | TTAA | 2 cut(s) | 471, 597 |
| TspDTI | ATGAA | 2 cut(s) | 17, 370 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 201 |
| VpaK11BI | GGWCC | 1 cut(s) | 254 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 492 |
| XapI | RAATTY | 1 cut(s) | 367 |
| XmiI | GTMKAC | 1 cut(s) | 557 |
| XmnI | GAANNNNTTC | 1 cut(s) | 377 |