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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 34, 548 |
| AccII | CGCG | 1 cut(s) | 192 |
| AcoI | YGGCCR | 1 cut(s) | 440 |
| AcuI | CTGAAG | 1 cut(s) | 423 |
| AfaI | GTAC | 2 cut(s) | 286, 345 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 136, 175, 196, 480 |
| AgsI | TTSAA | 1 cut(s) | 220 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 465 |
| AjiI | CACGTC | 1 cut(s) | 12 |
| AjnI | CCWGG | 2 cut(s) | 228, 478 |
| AluBI | AGCT | 3 cut(s) | 40, 245, 298 |
| AluI | AGCT | 3 cut(s) | 40, 245, 298 |
| Alw21I | GWGCWC | 1 cut(s) | 528 |
| Alw26I | GTCTC | 2 cut(s) | 65, 412 |
| Alw44I | GTGCAC | 1 cut(s) | 524 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 229 |
| Ama87I | CYCGRG | 1 cut(s) | 411 |
| AoxI | GGCC | 3 cut(s) | 81, 414, 440 |
| ApaLI | GTGCAC | 1 cut(s) | 524 |
| ApeKI | GCWGC | 2 cut(s) | 266, 298 |
| AspLEI | GCGC | 2 cut(s) | 194, 433 |
| AspS9I | GGNCC | 1 cut(s) | 414 |
| AsuC2I | CCSGG | 3 cut(s) | 169, 412, 413 |
| AsuHPI | GGTGA | 1 cut(s) | 154 |
| AvaI | CYCGRG | 1 cut(s) | 411 |
| BaeGI | GKGCMC | 1 cut(s) | 528 |
| Bbv12I | GWGCWC | 1 cut(s) | 528 |
| BbvCI | CCTCAGC | 1 cut(s) | 41 |
| BbvI | GCAGC | 2 cut(s) | 253, 285 |
| BccI | CCATC | 1 cut(s) | 244 |
| BceAI | ACGGC | 1 cut(s) | 191 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 280, 314 |
| BciT130I | CCWGG | 2 cut(s) | 230, 480 |
| BclI | TGATCA | 1 cut(s) | 328 |
| BcnI | CCSGG | 3 cut(s) | 169, 412, 413 |
| BcoDI | GTCTC | 2 cut(s) | 65, 412 |
| BisI | GCNGC | 5 cut(s) | 126, 204, 267, 299, 518 |
| BlsI | GCNGC | 5 cut(s) | 127, 205, 268, 300, 519 |
| Bme1390I | CCNGG | 5 cut(s) | 169, 230, 412, 413, 480 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 465 |
| BmeT110I | CYCGRG | 1 cut(s) | 411 |
| BmgBI | CACGTC | 1 cut(s) | 12 |
| BmgT120I | GGNCC | 1 cut(s) | 414 |
| BmiI | GGNNCC | 1 cut(s) | 188 |
| BmrFI | CCNGG | 5 cut(s) | 169, 230, 412, 413, 480 |
| BmrI | ACTGGG | 1 cut(s) | 124 |
| BmsI | GCATC | 2 cut(s) | 278, 516 |
| BmuI | ACTGGG | 1 cut(s) | 124 |
| BoxI | GACNNNNGTC | 1 cut(s) | 372 |
| BpmI | CTGGAG | 5 cut(s) | 47, 95, 117, 194, 251 |
| Bpu10I | CCTNAGC | 1 cut(s) | 41 |
| BpuEI | CTTGAG | 1 cut(s) | 9 |
| BpuMI | CCSGG | 3 cut(s) | 169, 412, 413 |
| BsaI | GGTCTC | 1 cut(s) | 65 |
| BsaJI | CCNNGG | 4 cut(s) | 207, 370, 411, 479 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 136, 175, 196, 480 |
| Bse118I | RCCGGY | 1 cut(s) | 520 |
| Bse1I | ACTGG | 3 cut(s) | 130, 282, 397 |
| BseBI | CCWGG | 2 cut(s) | 230, 480 |
| BseDI | CCNNGG | 4 cut(s) | 207, 370, 411, 479 |
| BseGI | GGATG | 1 cut(s) | 507 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 136, 175, 196, 480 |
| BseMII | CTCAG | 3 cut(s) | 32, 171, 327 |
| BseNI | ACTGG | 3 cut(s) | 130, 282, 397 |
| BseRI | GAGGAG | 1 cut(s) | 62 |
| BseSI | GKGCMC | 1 cut(s) | 528 |
| BseX3I | CGGCCG | 1 cut(s) | 440 |
| BseXI | GCAGC | 2 cut(s) | 253, 285 |
| BsgI | GTGCAG | 1 cut(s) | 433 |
| Bsh1236I | CGCG | 1 cut(s) | 192 |
| Bsh1285I | CGRYCG | 1 cut(s) | 443 |
| BshFI | GGCC | 3 cut(s) | 83, 416, 442 |
| BsiEI | CGRYCG | 1 cut(s) | 443 |
| BsiHKAI | GWGCWC | 1 cut(s) | 528 |
| BsiHKCI | CYCGRG | 1 cut(s) | 411 |
| BsiSI | CCGG | 4 cut(s) | 169, 412, 443, 521 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 136, 175, 196, 480 |
| BsmAI | GTCTC | 2 cut(s) | 65, 412 |
| BsnI | GGCC | 3 cut(s) | 83, 416, 442 |
| Bso31I | GGTCTC | 1 cut(s) | 65 |
| BsoBI | CYCGRG | 1 cut(s) | 411 |
| Bsp1286I | GDGCHC | 1 cut(s) | 528 |
| Bsp143I | GATC | 3 cut(s) | 51, 328, 347 |
| BspANI | GGCC | 3 cut(s) | 83, 416, 442 |
| BspCNI | CTCAG | 3 cut(s) | 33, 172, 328 |
| BspFNI | CGCG | 1 cut(s) | 192 |
| BspLI | GGNNCC | 1 cut(s) | 188 |
| BspTNI | GGTCTC | 1 cut(s) | 65 |
| BsrBI | CCGCTC | 2 cut(s) | 34, 548 |
| BsrFI | RCCGGY | 1 cut(s) | 520 |
| BsrI | ACTGG | 3 cut(s) | 130, 282, 397 |
| BssAI | RCCGGY | 1 cut(s) | 520 |
| BssECI | CCNNGG | 4 cut(s) | 207, 370, 411, 479 |
| BssMI | GATC | 3 cut(s) | 51, 328, 347 |
| Bst2UI | CCWGG | 2 cut(s) | 230, 480 |
| Bst4CI | ACNGT | 2 cut(s) | 374, 437 |
| Bst6I | CTCTTC | 1 cut(s) | 140 |
| BstC8I | GCNNGC | 1 cut(s) | 243 |
| BstDEI | CTNAG | 3 cut(s) | 41, 180, 336 |
| BstDSI | CCRYGG | 2 cut(s) | 207, 370 |
| BstF5I | GGATG | 1 cut(s) | 507 |
| BstFNI | CGCG | 1 cut(s) | 192 |
| BstHHI | GCGC | 2 cut(s) | 194, 433 |
| BstKTI | GATC | 3 cut(s) | 54, 331, 350 |
| BstMAI | GTCTC | 2 cut(s) | 65, 412 |
| BstMBI | GATC | 3 cut(s) | 51, 328, 347 |
| BstMCI | CGRYCG | 1 cut(s) | 443 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 134, 200, 266, 439, 523 |
| BstNI | CCWGG | 2 cut(s) | 230, 480 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 372 |
| BstSCI | CCNGG | 5 cut(s) | 167, 228, 410, 411, 478 |
| BstSLI | GKGCMC | 1 cut(s) | 528 |
| BstUI | CGCG | 1 cut(s) | 192 |
| BstV1I | GCAGC | 2 cut(s) | 253, 285 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 424 |
| BstZI | CGGCCG | 1 cut(s) | 440 |
| BsuRI | GGCC | 3 cut(s) | 83, 416, 442 |
| BtgI | CCRYGG | 2 cut(s) | 207, 370 |
| BtrI | CACGTC | 1 cut(s) | 12 |
| BtsCI | GGATG | 1 cut(s) | 507 |
| BtsI | GCAGTG | 1 cut(s) | 361 |
| BtsIMutI | CAGTG | 1 cut(s) | 361 |
| Cac8I | GCNNGC | 1 cut(s) | 243 |
| CaiI | CAGNNNCTG | 1 cut(s) | 229 |
| CfoI | GCGC | 2 cut(s) | 194, 433 |
| Cfr10I | RCCGGY | 1 cut(s) | 520 |
| Cfr13I | GGNCC | 1 cut(s) | 414 |
| Cfr9I | CCCGGG | 1 cut(s) | 411 |
| Csp6I | GTAC | 2 cut(s) | 285, 344 |
| CviAII | CATG | 1 cut(s) | 502 |
| CviQI | GTAC | 2 cut(s) | 285, 344 |
| DdeI | CTNAG | 3 cut(s) | 41, 180, 336 |
| DpnI | GATC | 3 cut(s) | 53, 330, 349 |
| DpnII | GATC | 3 cut(s) | 51, 328, 347 |
| DriI | GACNNNNNGTC | 1 cut(s) | 465 |
| EaeI | YGGCCR | 1 cut(s) | 440 |
| EagI | CGGCCG | 1 cut(s) | 440 |
| Eam1104I | CTCTTC | 1 cut(s) | 140 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 465 |
| EarI | CTCTTC | 1 cut(s) | 140 |
| EclXI | CGGCCG | 1 cut(s) | 440 |
| Eco31I | GGTCTC | 1 cut(s) | 65 |
| Eco52I | CGGCCG | 1 cut(s) | 440 |
| Eco57I | CTGAAG | 1 cut(s) | 423 |
| Eco88I | CYCGRG | 1 cut(s) | 411 |
| EcoRII | CCWGG | 2 cut(s) | 228, 478 |
| FaeI | CATG | 1 cut(s) | 505 |
| FaiI | YATR | 5 cut(s) | 105, 237, 425, 458, 503 |
| FatI | CATG | 1 cut(s) | 501 |
| FauI | CCCGC | 2 cut(s) | 108, 396 |
| FbaI | TGATCA | 1 cut(s) | 328 |
| Fnu4HI | GCNGC | 5 cut(s) | 126, 204, 267, 299, 518 |
| FokI | GGATG | 1 cut(s) | 494 |
| Fsp4HI | GCNGC | 5 cut(s) | 126, 204, 267, 299, 518 |
| GlaI | GCGC | 2 cut(s) | 193, 432 |
| GluI | GCNGC | 5 cut(s) | 126, 204, 267, 299, 518 |
| GsuI | CTGGAG | 5 cut(s) | 47, 95, 117, 194, 251 |
| HaeIII | GGCC | 3 cut(s) | 83, 416, 442 |
| HapII | CCGG | 4 cut(s) | 169, 412, 443, 521 |
| HhaI | GCGC | 2 cut(s) | 194, 433 |
| Hin1II | CATG | 1 cut(s) | 505 |
| Hin6I | GCGC | 2 cut(s) | 192, 431 |
| HinP1I | GCGC | 2 cut(s) | 192, 431 |
| HinfI | GANTC | 4 cut(s) | 119, 292, 382, 466 |
| HpaII | CCGG | 4 cut(s) | 169, 412, 443, 521 |
| HphI | GGTGA | 1 cut(s) | 154 |
| Hpy166II | GTNNAC | 2 cut(s) | 344, 526 |
| Hpy188I | TCNGA | 4 cut(s) | 249, 333, 403, 487 |
| Hpy188III | TCNNGA | 1 cut(s) | 64 |
| Hpy8I | GTNNAC | 2 cut(s) | 344, 526 |
| HpyAV | CCTTC | 1 cut(s) | 256 |
| HpyCH4III | ACNGT | 2 cut(s) | 374, 437 |
| HpyCH4IV | ACGT | 1 cut(s) | 11 |
| HpyCH4V | TGCA | 3 cut(s) | 269, 450, 526 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 134, 200, 266, 439, 523 |
| HpyF3I | CTNAG | 3 cut(s) | 41, 180, 336 |
| HpySE526I | ACGT | 1 cut(s) | 11 |
| Hsp92II | CATG | 1 cut(s) | 505 |
| HspAI | GCGC | 2 cut(s) | 192, 431 |
| Ksp22I | TGATCA | 1 cut(s) | 328 |
| Kzo9I | GATC | 3 cut(s) | 51, 328, 347 |
| LmnI | GCTCC | 1 cut(s) | 553 |
| Lsp1109I | GCAGC | 2 cut(s) | 253, 285 |
| LweI | GCATC | 2 cut(s) | 278, 516 |
| MaeII | ACGT | 1 cut(s) | 11 |
| MaeIII | GTNAC | 3 cut(s) | 7, 12, 365 |
| MalI | GATC | 3 cut(s) | 53, 330, 349 |
| MbiI | CCGCTC | 2 cut(s) | 34, 548 |
| MboI | GATC | 3 cut(s) | 51, 328, 347 |
| MboII | GAAGA | 2 cut(s) | 157, 545 |
| MhlI | GDGCHC | 1 cut(s) | 528 |
| MluCI | AATT | 1 cut(s) | 254 |
| MlyI | GAGTC | 4 cut(s) | 128, 301, 376, 475 |
| MmeI | TCCRAC | 2 cut(s) | 132, 535 |
| MslI | CAYNNNNRTG | 1 cut(s) | 455 |
| MspA1I | CMGCKG | 3 cut(s) | 115, 298, 379 |
| MspI | CCGG | 4 cut(s) | 169, 412, 443, 521 |
| MspR9I | CCNGG | 5 cut(s) | 169, 230, 412, 413, 480 |
| MvaI | CCWGG | 2 cut(s) | 230, 480 |
| MvnI | CGCG | 1 cut(s) | 192 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 134, 200, 266, 439, 523 |
| NciI | CCSGG | 3 cut(s) | 169, 412, 413 |
| NdeII | GATC | 3 cut(s) | 51, 328, 347 |
| NlaIII | CATG | 1 cut(s) | 505 |
| NlaIV | GGNNCC | 1 cut(s) | 188 |
| NmuCI | GTSAC | 3 cut(s) | 7, 12, 365 |
| PfoI | TCCNGGA | 1 cut(s) | 228 |
| PkrI | GCNGC | 5 cut(s) | 127, 205, 268, 300, 519 |
| PleI | GAGTC | 4 cut(s) | 127, 300, 376, 474 |
| PpsI | GAGTC | 4 cut(s) | 127, 300, 376, 474 |
| PshAI | GACNNNNGTC | 1 cut(s) | 372 |
| Psp6I | CCWGG | 2 cut(s) | 228, 478 |
| PspGI | CCWGG | 2 cut(s) | 228, 478 |
| PspN4I | GGNNCC | 1 cut(s) | 188 |
| PspPI | GGNCC | 1 cut(s) | 414 |
| PstNI | CAGNNNCTG | 1 cut(s) | 229 |
| PvuII | CAGCTG | 1 cut(s) | 298 |
| RsaI | GTAC | 2 cut(s) | 286, 345 |
| RsaNI | GTAC | 2 cut(s) | 285, 344 |
| RseI | CAYNNNNRTG | 1 cut(s) | 455 |
| SatI | GCNGC | 5 cut(s) | 126, 204, 267, 299, 518 |
| Sau3AI | GATC | 3 cut(s) | 51, 328, 347 |
| Sau96I | GGNCC | 1 cut(s) | 414 |
| SchI | GAGTC | 4 cut(s) | 128, 301, 376, 475 |
| ScrFI | CCNGG | 5 cut(s) | 169, 230, 412, 413, 480 |
| SduI | GDGCHC | 1 cut(s) | 528 |
| SetI | ASST | 9 cut(s) | 14, 42, 61, 144, 152, 165, 201, 247, 300 |
| SfaNI | GCATC | 2 cut(s) | 278, 516 |
| SgrAI | CRCCGGYG | 1 cut(s) | 520 |
| SmaI | CCCGGG | 1 cut(s) | 413 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 455 |
| SmlI | CTYRAG | 1 cut(s) | 24 |
| SmoI | CTYRAG | 1 cut(s) | 24 |
| Sse9I | AATT | 1 cut(s) | 254 |
| StyD4I | CCNGG | 5 cut(s) | 167, 228, 410, 411, 478 |
| TaaI | ACNGT | 2 cut(s) | 374, 437 |
| TaiI | ACGT | 1 cut(s) | 14 |
| TaqI | TCGA | 2 cut(s) | 30, 290 |
| TasI | AATT | 1 cut(s) | 254 |
| TatI | WGTACW | 1 cut(s) | 284 |
| TauI | GCSGC | 3 cut(s) | 128, 206, 520 |
| TscAI | CASTG | 1 cut(s) | 361 |
| TseFI | GTSAC | 3 cut(s) | 7, 12, 365 |
| TseI | GCWGC | 2 cut(s) | 266, 298 |
| Tsp45I | GTSAC | 3 cut(s) | 7, 12, 365 |
| TspMI | CCCGGG | 1 cut(s) | 411 |
| TspRI | CASTG | 1 cut(s) | 361 |
| VneI | GTGCAC | 1 cut(s) | 524 |
| XmaI | CCCGGG | 1 cut(s) | 411 |