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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 477 |
| AccBSI | CCGCTC | 4 cut(s) | 262, 400, 433, 544 |
| AccII | CGCG | 1 cut(s) | 507 |
| AclWI | GGATC | 3 cut(s) | 432, 600, 619 |
| AcsI | RAATTY | 1 cut(s) | 215 |
| AcuI | CTGAAG | 1 cut(s) | 614 |
| AcyI | GRCGYC | 1 cut(s) | 478 |
| AfaI | GTAC | 1 cut(s) | 42 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 148, 456, 487, 531, 589, 634 |
| AgsI | TTSAA | 1 cut(s) | 148 |
| AjiI | CACGTC | 2 cut(s) | 538, 556 |
| AjnI | CCWGG | 1 cut(s) | 560 |
| AluBI | AGCT | 4 cut(s) | 8, 327, 406, 514 |
| AluI | AGCT | 4 cut(s) | 8, 327, 406, 514 |
| Alw21I | GWGCWC | 1 cut(s) | 297 |
| Alw26I | GTCTC | 2 cut(s) | 95, 562 |
| AlwI | GGATC | 3 cut(s) | 432, 600, 619 |
| Ama87I | CYCGRG | 1 cut(s) | 390 |
| AoxI | GGCC | 2 cut(s) | 150, 447 |
| ApeKI | GCWGC | 5 cut(s) | 355, 374, 385, 403, 656 |
| ApoI | RAATTY | 1 cut(s) | 215 |
| AspLEI | GCGC | 2 cut(s) | 212, 480 |
| AspS9I | GGNCC | 1 cut(s) | 112 |
| AsuHPI | GGTGA | 1 cut(s) | 622 |
| AvaI | CYCGRG | 1 cut(s) | 390 |
| AvaII | GGWCC | 1 cut(s) | 112 |
| BaeGI | GKGCMC | 1 cut(s) | 342 |
| BanI | GGYRCC | 1 cut(s) | 477 |
| Bbv12I | GWGCWC | 1 cut(s) | 297 |
| BbvI | GCAGC | 5 cut(s) | 342, 361, 397, 415, 643 |
| BceAI | ACGGC | 2 cut(s) | 105, 509 |
| BciT130I | CCWGG | 1 cut(s) | 562 |
| BclI | TGATCA | 1 cut(s) | 310 |
| BcoDI | GTCTC | 2 cut(s) | 95, 562 |
| BfaI | CTAG | 1 cut(s) | 428 |
| BfmI | CTRYAG | 2 cut(s) | 322, 657 |
| BfoI | RGCGCY | 1 cut(s) | 481 |
| Bme1390I | CCNGG | 1 cut(s) | 562 |
| Bme18I | GGWCC | 1 cut(s) | 112 |
| BmeT110I | CYCGRG | 1 cut(s) | 390 |
| BmgBI | CACGTC | 2 cut(s) | 538, 556 |
| BmgT120I | GGNCC | 1 cut(s) | 112 |
| BmiI | GGNNCC | 2 cut(s) | 113, 479 |
| BmrFI | CCNGG | 1 cut(s) | 562 |
| BmsI | GCATC | 1 cut(s) | 457 |
| BpmI | CTGGAG | 4 cut(s) | 101, 191, 544, 587 |
| Bpu10I | CCTNAGC | 2 cut(s) | 231, 407 |
| BsaHI | GRCGYC | 1 cut(s) | 478 |
| BsaJI | CCNNGG | 3 cut(s) | 389, 450, 505 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 542, 572 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 148, 456, 487, 531, 589, 634 |
| BseBI | CCWGG | 1 cut(s) | 562 |
| BseDI | CCNNGG | 3 cut(s) | 389, 450, 505 |
| BseGI | GGATG | 1 cut(s) | 682 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 148, 456, 487, 531, 589, 634 |
| BseMII | CTCAG | 1 cut(s) | 222 |
| BseSI | GKGCMC | 1 cut(s) | 342 |
| BseXI | GCAGC | 5 cut(s) | 342, 361, 397, 415, 643 |
| BseYI | CCCAGC | 1 cut(s) | 164 |
| BsgI | GTGCAG | 1 cut(s) | 197 |
| Bsh1236I | CGCG | 1 cut(s) | 507 |
| BshFI | GGCC | 2 cut(s) | 152, 449 |
| BshNI | GGYRCC | 1 cut(s) | 477 |
| BsiHKAI | GWGCWC | 1 cut(s) | 297 |
| BsiHKCI | CYCGRG | 1 cut(s) | 390 |
| BslFI | GGGAC | 1 cut(s) | 548 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 148, 456, 487, 531, 589, 634 |
| BsmAI | GTCTC | 2 cut(s) | 95, 562 |
| BsmBI | CGTCTC | 1 cut(s) | 562 |
| BsmFI | GGGAC | 1 cut(s) | 548 |
| BsnI | GGCC | 2 cut(s) | 152, 449 |
| BsoBI | CYCGRG | 1 cut(s) | 390 |
| Bsp1286I | GDGCHC | 2 cut(s) | 297, 342 |
| Bsp143I | GATC | 4 cut(s) | 310, 424, 592, 624 |
| BspANI | GGCC | 2 cut(s) | 152, 449 |
| BspCNI | CTCAG | 1 cut(s) | 223 |
| BspFNI | CGCG | 1 cut(s) | 507 |
| BspLI | GGNNCC | 2 cut(s) | 113, 479 |
| BspMAI | CTGCAG | 1 cut(s) | 661 |
| BspPI | GGATC | 3 cut(s) | 432, 600, 619 |
| BspT107I | GGYRCC | 1 cut(s) | 477 |
| BsrBI | CCGCTC | 4 cut(s) | 262, 400, 433, 544 |
| BssECI | CCNNGG | 3 cut(s) | 389, 450, 505 |
| BssMI | GATC | 4 cut(s) | 310, 424, 592, 624 |
| BssNI | GRCGYC | 1 cut(s) | 478 |
| BssT1I | CCWWGG | 1 cut(s) | 450 |
| Bst2UI | CCWGG | 1 cut(s) | 562 |
| Bst4CI | ACNGT | 2 cut(s) | 157, 184 |
| Bst6I | CTCTTC | 2 cut(s) | 408, 659 |
| BstACI | GRCGYC | 1 cut(s) | 478 |
| BstC8I | GCNNGC | 5 cut(s) | 138, 208, 260, 505, 512 |
| BstDEI | CTNAG | 4 cut(s) | 231, 407, 486, 648 |
| BstDSI | CCRYGG | 1 cut(s) | 505 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 485, 587 |
| BstF5I | GGATG | 1 cut(s) | 682 |
| BstFNI | CGCG | 1 cut(s) | 507 |
| BstH2I | RGCGCY | 1 cut(s) | 481 |
| BstHHI | GCGC | 2 cut(s) | 212, 480 |
| BstKTI | GATC | 4 cut(s) | 313, 427, 595, 627 |
| BstMAI | GTCTC | 2 cut(s) | 95, 562 |
| BstMBI | GATC | 4 cut(s) | 310, 424, 592, 624 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 137, 175, 653 |
| BstNI | CCWGG | 1 cut(s) | 562 |
| BstNSI | RCATGY | 1 cut(s) | 210 |
| BstSCI | CCNGG | 1 cut(s) | 560 |
| BstSFI | CTRYAG | 2 cut(s) | 322, 657 |
| BstSLI | GKGCMC | 1 cut(s) | 342 |
| BstUI | CGCG | 1 cut(s) | 507 |
| BstV1I | GCAGC | 5 cut(s) | 342, 361, 397, 415, 643 |
| BstX2I | RGATCY | 2 cut(s) | 424, 624 |
| BstYI | RGATCY | 2 cut(s) | 424, 624 |
| BsuRI | GGCC | 2 cut(s) | 152, 449 |
| BtgI | CCRYGG | 1 cut(s) | 505 |
| BtrI | CACGTC | 2 cut(s) | 538, 556 |
| BtsCI | GGATG | 1 cut(s) | 682 |
| BtsI | GCAGTG | 1 cut(s) | 666 |
| BtsIMutI | CAGTG | 3 cut(s) | 153, 638, 666 |
| Cac8I | GCNNGC | 5 cut(s) | 138, 208, 260, 505, 512 |
| CfoI | GCGC | 2 cut(s) | 212, 480 |
| Cfr13I | GGNCC | 1 cut(s) | 112 |
| Cfr42I | CCGCGG | 1 cut(s) | 508 |
| Csp6I | GTAC | 1 cut(s) | 41 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 35, 70 |
| CviAII | CATG | 3 cut(s) | 207, 359, 500 |
| CviQI | GTAC | 1 cut(s) | 41 |
| DdeI | CTNAG | 4 cut(s) | 231, 407, 486, 648 |
| DinI | GGCGCC | 1 cut(s) | 479 |
| DpnI | GATC | 4 cut(s) | 312, 426, 594, 626 |
| DpnII | GATC | 4 cut(s) | 310, 424, 592, 624 |
| Eam1104I | CTCTTC | 2 cut(s) | 408, 659 |
| EarI | CTCTTC | 2 cut(s) | 408, 659 |
| EciI | GGCGGA | 1 cut(s) | 617 |
| Eco130I | CCWWGG | 1 cut(s) | 450 |
| Eco47I | GGWCC | 1 cut(s) | 112 |
| Eco57I | CTGAAG | 1 cut(s) | 614 |
| Eco88I | CYCGRG | 1 cut(s) | 390 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 485, 587 |
| EcoO109I | RGGNCCY | 1 cut(s) | 112 |
| EcoRI | GAATTC | 1 cut(s) | 215 |
| EcoRII | CCWGG | 1 cut(s) | 560 |
| EcoT14I | CCWWGG | 1 cut(s) | 450 |
| EgeI | GGCGCC | 1 cut(s) | 479 |
| EheI | GGCGCC | 1 cut(s) | 479 |
| ErhI | CCWWGG | 1 cut(s) | 450 |
| Esp3I | CGTCTC | 1 cut(s) | 562 |
| FaeI | CATG | 3 cut(s) | 210, 362, 503 |
| FaiI | YATR | 4 cut(s) | 208, 360, 501, 578 |
| FaqI | GGGAC | 1 cut(s) | 548 |
| FatI | CATG | 3 cut(s) | 206, 358, 499 |
| FauI | CCCGC | 2 cut(s) | 426, 512 |
| FbaI | TGATCA | 1 cut(s) | 310 |
| FspBI | CTAG | 1 cut(s) | 428 |
| GlaI | GCGC | 2 cut(s) | 211, 479 |
| GsaI | CCCAGC | 1 cut(s) | 168 |
| GsuI | CTGGAG | 4 cut(s) | 101, 191, 544, 587 |
| HaeII | RGCGCY | 1 cut(s) | 481 |
| HaeIII | GGCC | 2 cut(s) | 152, 449 |
| HhaI | GCGC | 2 cut(s) | 212, 480 |
| Hin1I | GRCGYC | 1 cut(s) | 478 |
| Hin1II | CATG | 3 cut(s) | 210, 362, 503 |
| Hin6I | GCGC | 2 cut(s) | 210, 478 |
| HinP1I | GCGC | 2 cut(s) | 210, 478 |
| HinfI | GANTC | 3 cut(s) | 194, 288, 638 |
| HphI | GGTGA | 1 cut(s) | 622 |
| Hpy166II | GTNNAC | 1 cut(s) | 187 |
| Hpy188III | TCNNGA | 1 cut(s) | 428 |
| Hpy8I | GTNNAC | 1 cut(s) | 187 |
| Hpy99I | CGWCG | 1 cut(s) | 20 |
| HpyAV | CCTTC | 5 cut(s) | 121, 142, 583, 601, 638 |
| HpyCH4III | ACNGT | 2 cut(s) | 157, 184 |
| HpyCH4IV | ACGT | 3 cut(s) | 43, 537, 555 |
| HpyCH4V | TGCA | 3 cut(s) | 178, 358, 659 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 137, 175, 653 |
| HpyF3I | CTNAG | 4 cut(s) | 231, 407, 486, 648 |
| HpySE526I | ACGT | 3 cut(s) | 43, 537, 555 |
| Hsp92I | GRCGYC | 1 cut(s) | 478 |
| Hsp92II | CATG | 3 cut(s) | 210, 362, 503 |
| HspAI | GCGC | 2 cut(s) | 210, 478 |
| KasI | GGCGCC | 1 cut(s) | 477 |
| Ksp22I | TGATCA | 1 cut(s) | 310 |
| KspI | CCGCGG | 1 cut(s) | 508 |
| Kzo9I | GATC | 4 cut(s) | 310, 424, 592, 624 |
| LmnI | GCTCC | 4 cut(s) | 5, 397, 541, 568 |
| Lsp1109I | GCAGC | 5 cut(s) | 342, 361, 397, 415, 643 |
| LweI | GCATC | 1 cut(s) | 457 |
| MaeI | CTAG | 1 cut(s) | 428 |
| MaeII | ACGT | 3 cut(s) | 43, 537, 555 |
| MaeIII | GTNAC | 2 cut(s) | 28, 157 |
| MalI | GATC | 4 cut(s) | 312, 426, 594, 626 |
| MbiI | CCGCTC | 4 cut(s) | 262, 400, 433, 544 |
| MboI | GATC | 4 cut(s) | 310, 424, 592, 624 |
| MboII | GAAGA | 6 cut(s) | 95, 136, 238, 425, 625, 676 |
| MflI | RGATCY | 2 cut(s) | 424, 624 |
| MhlI | GDGCHC | 2 cut(s) | 297, 342 |
| MluCI | AATT | 1 cut(s) | 215 |
| Mly113I | GGCGCC | 1 cut(s) | 478 |
| MlyI | GAGTC | 1 cut(s) | 188 |
| MnlI | CCTC | 9 cut(s) | 73, 125, 166, 277, 399, 409, 439, 660, 667 |
| MspA1I | CMGCKG | 3 cut(s) | 23, 164, 507 |
| MspR9I | CCNGG | 1 cut(s) | 562 |
| MvaI | CCWGG | 1 cut(s) | 562 |
| MvnI | CGCG | 1 cut(s) | 507 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 137, 175, 653 |
| NarI | GGCGCC | 1 cut(s) | 478 |
| NdeII | GATC | 4 cut(s) | 310, 424, 592, 624 |
| NlaIII | CATG | 3 cut(s) | 210, 362, 503 |
| NlaIV | GGNNCC | 2 cut(s) | 113, 479 |
| NmeAIII | GCCGAG | 1 cut(s) | 308 |
| NmuCI | GTSAC | 2 cut(s) | 28, 157 |
| NspI | RCATGY | 1 cut(s) | 210 |
| PaeI | GCATGC | 1 cut(s) | 210 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 279, 288 |
| PfeI | GAWTC | 2 cut(s) | 288, 638 |
| PflFI | GACNNNGTC | 1 cut(s) | 554 |
| PleI | GAGTC | 1 cut(s) | 188 |
| PluTI | GGCGCC | 1 cut(s) | 481 |
| PpsI | GAGTC | 1 cut(s) | 188 |
| PpuMI | RGGWCCY | 1 cut(s) | 112 |
| Psp5II | RGGWCCY | 1 cut(s) | 112 |
| Psp6I | CCWGG | 1 cut(s) | 560 |
| PspFI | CCCAGC | 1 cut(s) | 164 |
| PspGI | CCWGG | 1 cut(s) | 560 |
| PspN4I | GGNNCC | 2 cut(s) | 113, 479 |
| PspPI | GGNCC | 1 cut(s) | 112 |
| PspPPI | RGGWCCY | 1 cut(s) | 112 |
| PstI | CTGCAG | 1 cut(s) | 661 |
| PsuI | RGATCY | 2 cut(s) | 424, 624 |
| PsyI | GACNNNGTC | 1 cut(s) | 554 |
| RsaI | GTAC | 1 cut(s) | 42 |
| RsaNI | GTAC | 1 cut(s) | 41 |
| SacII | CCGCGG | 1 cut(s) | 508 |
| Sau3AI | GATC | 4 cut(s) | 310, 424, 592, 624 |
| Sau96I | GGNCC | 1 cut(s) | 112 |
| SchI | GAGTC | 1 cut(s) | 188 |
| ScrFI | CCNGG | 1 cut(s) | 562 |
| SduI | GDGCHC | 2 cut(s) | 297, 342 |
| SfaNI | GCATC | 1 cut(s) | 457 |
| SfcI | CTRYAG | 2 cut(s) | 322, 657 |
| SfoI | GGCGCC | 1 cut(s) | 479 |
| Sfr303I | CCGCGG | 1 cut(s) | 508 |
| SgrBI | CCGCGG | 1 cut(s) | 508 |
| SinI | GGWCC | 1 cut(s) | 112 |
| SphI | GCATGC | 1 cut(s) | 210 |
| Sse9I | AATT | 1 cut(s) | 215 |
| SspDI | GGCGCC | 1 cut(s) | 477 |
| SspMI | CTAG | 1 cut(s) | 428 |
| StyD4I | CCNGG | 1 cut(s) | 560 |
| StyI | CCWWGG | 1 cut(s) | 450 |
| TaaI | ACNGT | 2 cut(s) | 157, 184 |
| TaiI | ACGT | 3 cut(s) | 46, 540, 558 |
| TaqI | TCGA | 1 cut(s) | 282 |
| TasI | AATT | 1 cut(s) | 215 |
| TauI | GCSGC | 5 cut(s) | 23, 279, 403, 478, 510 |
| TfiI | GAWTC | 2 cut(s) | 288, 638 |
| TscAI | CASTG | 3 cut(s) | 160, 638, 666 |
| TseFI | GTSAC | 2 cut(s) | 28, 157 |
| TseI | GCWGC | 5 cut(s) | 355, 374, 385, 403, 656 |
| Tsp45I | GTSAC | 2 cut(s) | 28, 157 |
| TspDTI | ATGAA | 1 cut(s) | 602 |
| TspRI | CASTG | 3 cut(s) | 160, 638, 666 |
| Tth111I | GACNNNGTC | 1 cut(s) | 554 |
| VpaK11BI | GGWCC | 1 cut(s) | 112 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 485, 587 |
| XapI | RAATTY | 1 cut(s) | 215 |
| XbaI | TCTAGA | 1 cut(s) | 427 |
| XceI | RCATGY | 1 cut(s) | 210 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 457 |
| XspI | CTAG | 1 cut(s) | 428 |