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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 84, 548 |
| AccBSI | CCGCTC | 1 cut(s) | 82 |
| AccII | CGCG | 1 cut(s) | 432 |
| AclI | AACGTT | 1 cut(s) | 69 |
| AclWI | GGATC | 2 cut(s) | 150, 169 |
| AcoI | YGGCCR | 2 cut(s) | 150, 290 |
| AcuI | CTGAAG | 1 cut(s) | 164 |
| AcyI | GRCGYC | 1 cut(s) | 407 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 81, 138, 139, 456, 457 |
| AflIII | ACRYGT | 1 cut(s) | 126 |
| AgsI | TTSAA | 1 cut(s) | 347 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 483 |
| AjnI | CCWGG | 2 cut(s) | 87, 334 |
| AluBI | AGCT | 3 cut(s) | 64, 287, 566 |
| AluI | AGCT | 3 cut(s) | 64, 287, 566 |
| Alw26I | GTCTC | 1 cut(s) | 470 |
| AlwI | GGATC | 2 cut(s) | 150, 169 |
| Ama87I | CYCGRG | 4 cut(s) | 54, 358, 456, 495 |
| AoxI | GGCC | 5 cut(s) | 30, 150, 255, 290, 534 |
| ApeKI | GCWGC | 6 cut(s) | 44, 136, 265, 305, 317, 446 |
| AspLEI | GCGC | 1 cut(s) | 434 |
| AspS9I | GGNCC | 1 cut(s) | 255 |
| AsuC2I | CCSGG | 4 cut(s) | 55, 56, 457, 458 |
| AsuHPI | GGTGA | 1 cut(s) | 239 |
| AvaI | CYCGRG | 4 cut(s) | 54, 358, 456, 495 |
| BanI | GGYRCC | 2 cut(s) | 84, 548 |
| BanII | GRGCYC | 1 cut(s) | 355 |
| BbvI | GCAGC | 6 cut(s) | 31, 123, 252, 292, 304, 458 |
| BccI | CCATC | 2 cut(s) | 283, 458 |
| BceAI | ACGGC | 2 cut(s) | 242, 501 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 23, 57 |
| BciT130I | CCWGG | 2 cut(s) | 89, 336 |
| BcnI | CCSGG | 4 cut(s) | 55, 56, 457, 458 |
| BcoDI | GTCTC | 1 cut(s) | 470 |
| BfaI | CTAG | 2 cut(s) | 221, 249 |
| BfmI | CTRYAG | 1 cut(s) | 45 |
| Bme1390I | CCNGG | 6 cut(s) | 55, 56, 89, 336, 457, 458 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 483 |
| BmeT110I | CYCGRG | 4 cut(s) | 54, 358, 456, 495 |
| BmgT120I | GGNCC | 1 cut(s) | 255 |
| BmiI | GGNNCC | 4 cut(s) | 86, 256, 352, 550 |
| BmrFI | CCNGG | 6 cut(s) | 55, 56, 89, 336, 457, 458 |
| BmrI | ACTGGG | 1 cut(s) | 477 |
| BmsI | GCATC | 1 cut(s) | 31 |
| BmuI | ACTGGG | 1 cut(s) | 477 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 380, 412 |
| BpmI | CTGGAG | 1 cut(s) | 110 |
| Bpu10I | CCTNAGC | 1 cut(s) | 156 |
| BpuMI | CCSGG | 4 cut(s) | 55, 56, 457, 458 |
| BsaHI | GRCGYC | 1 cut(s) | 407 |
| BsaI | GGTCTC | 1 cut(s) | 470 |
| BsaJI | CCNNGG | 5 cut(s) | 54, 55, 334, 456, 496 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 81, 138, 139, 456, 457 |
| Bse1I | ACTGG | 2 cut(s) | 483, 540 |
| BseBI | CCWGG | 2 cut(s) | 89, 336 |
| BseDI | CCNNGG | 5 cut(s) | 54, 55, 334, 456, 496 |
| BseGI | GGATG | 3 cut(s) | 211, 469, 523 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 81, 138, 139, 456, 457 |
| BseMII | CTCAG | 3 cut(s) | 411, 413, 428 |
| BseNI | ACTGG | 2 cut(s) | 483, 540 |
| BseRI | GAGGAG | 1 cut(s) | 383 |
| BseXI | GCAGC | 6 cut(s) | 31, 123, 252, 292, 304, 458 |
| BseYI | CCCAGC | 1 cut(s) | 434 |
| Bsh1236I | CGCG | 1 cut(s) | 432 |
| BshFI | GGCC | 5 cut(s) | 32, 152, 257, 292, 536 |
| BshNI | GGYRCC | 2 cut(s) | 84, 548 |
| BsiHKCI | CYCGRG | 4 cut(s) | 54, 358, 456, 495 |
| BsiSI | CCGG | 2 cut(s) | 55, 457 |
| BslFI | GGGAC | 2 cut(s) | 115, 471 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 81, 138, 139, 456, 457 |
| BsmAI | GTCTC | 1 cut(s) | 470 |
| BsmFI | GGGAC | 2 cut(s) | 115, 471 |
| BsnI | GGCC | 5 cut(s) | 32, 152, 257, 292, 536 |
| Bso31I | GGTCTC | 1 cut(s) | 470 |
| BsoBI | CYCGRG | 4 cut(s) | 54, 358, 456, 495 |
| Bsp1286I | GDGCHC | 1 cut(s) | 355 |
| Bsp143I | GATC | 2 cut(s) | 142, 174 |
| BspANI | GGCC | 5 cut(s) | 32, 152, 257, 292, 536 |
| BspCNI | CTCAG | 3 cut(s) | 412, 412, 427 |
| BspFNI | CGCG | 1 cut(s) | 432 |
| BspLI | GGNNCC | 4 cut(s) | 86, 256, 352, 550 |
| BspMAI | CTGCAG | 1 cut(s) | 49 |
| BspPI | GGATC | 2 cut(s) | 150, 169 |
| BspT107I | GGYRCC | 2 cut(s) | 84, 548 |
| BspTNI | GGTCTC | 1 cut(s) | 470 |
| BsrBI | CCGCTC | 1 cut(s) | 82 |
| BsrI | ACTGG | 2 cut(s) | 483, 540 |
| BssECI | CCNNGG | 5 cut(s) | 54, 55, 334, 456, 496 |
| BssMI | GATC | 2 cut(s) | 142, 174 |
| BssNI | GRCGYC | 1 cut(s) | 407 |
| Bst2UI | CCWGG | 2 cut(s) | 89, 336 |
| Bst4CI | ACNGT | 2 cut(s) | 105, 472 |
| BstACI | GRCGYC | 1 cut(s) | 407 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 305 |
| BstC8I | GCNNGC | 3 cut(s) | 62, 238, 534 |
| BstDEI | CTNAG | 4 cut(s) | 156, 399, 414, 420 |
| BstF5I | GGATG | 3 cut(s) | 211, 469, 523 |
| BstFNI | CGCG | 1 cut(s) | 432 |
| BstHHI | GCGC | 1 cut(s) | 434 |
| BstKTI | GATC | 2 cut(s) | 145, 177 |
| BstMAI | GTCTC | 1 cut(s) | 470 |
| BstMBI | GATC | 2 cut(s) | 142, 174 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 91, 254, 271, 305, 314, 326 |
| BstNI | CCWGG | 2 cut(s) | 89, 336 |
| BstNSI | RCATGY | 1 cut(s) | 130 |
| BstSCI | CCNGG | 6 cut(s) | 53, 54, 87, 334, 455, 456 |
| BstSFI | CTRYAG | 1 cut(s) | 45 |
| BstUI | CGCG | 1 cut(s) | 432 |
| BstV1I | GCAGC | 6 cut(s) | 31, 123, 252, 292, 304, 458 |
| BstX2I | RGATCY | 1 cut(s) | 174 |
| BstYI | RGATCY | 1 cut(s) | 174 |
| BsuRI | GGCC | 5 cut(s) | 32, 152, 257, 292, 536 |
| BtgZI | GCGATG | 1 cut(s) | 54 |
| BtsCI | GGATG | 3 cut(s) | 211, 469, 523 |
| BtsI | GCAGTG | 1 cut(s) | 312 |
| BtsIMutI | CAGTG | 1 cut(s) | 312 |
| Cac8I | GCNNGC | 3 cut(s) | 62, 238, 534 |
| CfoI | GCGC | 1 cut(s) | 434 |
| Cfr13I | GGNCC | 1 cut(s) | 255 |
| Cfr9I | CCCGGG | 2 cut(s) | 54, 456 |
| CseI | GACGC | 2 cut(s) | 27, 415 |
| CviAII | CATG | 2 cut(s) | 127, 341 |
| DdeI | CTNAG | 4 cut(s) | 156, 399, 414, 420 |
| DpnI | GATC | 2 cut(s) | 144, 176 |
| DpnII | GATC | 2 cut(s) | 142, 174 |
| DriI | GACNNNNNGTC | 1 cut(s) | 483 |
| EaeI | YGGCCR | 2 cut(s) | 150, 290 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 483 |
| EciI | GGCGGA | 3 cut(s) | 181, 393, 476 |
| Eco24I | GRGCYC | 1 cut(s) | 355 |
| Eco31I | GGTCTC | 1 cut(s) | 470 |
| Eco57I | CTGAAG | 1 cut(s) | 164 |
| Eco88I | CYCGRG | 4 cut(s) | 54, 358, 456, 495 |
| EcoRII | CCWGG | 2 cut(s) | 87, 334 |
| EcoT38I | GRGCYC | 1 cut(s) | 355 |
| FaeI | CATG | 2 cut(s) | 130, 344 |
| FaiI | YATR | 2 cut(s) | 128, 342 |
| FaqI | GGGAC | 2 cut(s) | 115, 471 |
| FatI | CATG | 2 cut(s) | 126, 340 |
| FauI | CCCGC | 2 cut(s) | 132, 589 |
| FokI | GGATG | 3 cut(s) | 218, 476, 510 |
| FriOI | GRGCYC | 1 cut(s) | 355 |
| FspBI | CTAG | 2 cut(s) | 221, 249 |
| GlaI | GCGC | 1 cut(s) | 433 |
| GsaI | CCCAGC | 1 cut(s) | 438 |
| GsuI | CTGGAG | 1 cut(s) | 110 |
| HaeIII | GGCC | 5 cut(s) | 32, 152, 257, 292, 536 |
| HapII | CCGG | 2 cut(s) | 55, 457 |
| HgaI | GACGC | 2 cut(s) | 27, 415 |
| HhaI | GCGC | 1 cut(s) | 434 |
| Hin1I | GRCGYC | 1 cut(s) | 407 |
| Hin1II | CATG | 2 cut(s) | 130, 344 |
| Hin6I | GCGC | 1 cut(s) | 432 |
| HinP1I | GCGC | 1 cut(s) | 432 |
| HinfI | GANTC | 3 cut(s) | 188, 381, 395 |
| HpaII | CCGG | 2 cut(s) | 55, 457 |
| HphI | GGTGA | 1 cut(s) | 239 |
| Hpy166II | GTNNAC | 1 cut(s) | 521 |
| Hpy188I | TCNGA | 2 cut(s) | 421, 505 |
| Hpy8I | GTNNAC | 1 cut(s) | 521 |
| Hpy99I | CGWCG | 1 cut(s) | 21 |
| HpyAV | CCTTC | 3 cut(s) | 188, 341, 548 |
| HpyCH4III | ACNGT | 2 cut(s) | 105, 472 |
| HpyCH4IV | ACGT | 1 cut(s) | 69 |
| HpyCH4V | TGCA | 1 cut(s) | 47 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 91, 254, 271, 305, 314, 326 |
| HpyF3I | CTNAG | 4 cut(s) | 156, 399, 414, 420 |
| HpySE526I | ACGT | 1 cut(s) | 69 |
| Hsp92I | GRCGYC | 1 cut(s) | 407 |
| Hsp92II | CATG | 2 cut(s) | 130, 344 |
| HspAI | GCGC | 1 cut(s) | 432 |
| Kzo9I | GATC | 2 cut(s) | 142, 174 |
| LmnI | GCTCC | 5 cut(s) | 91, 118, 313, 350, 563 |
| Lsp1109I | GCAGC | 6 cut(s) | 31, 123, 252, 292, 304, 458 |
| LweI | GCATC | 1 cut(s) | 31 |
| MaeI | CTAG | 2 cut(s) | 221, 249 |
| MaeII | ACGT | 1 cut(s) | 69 |
| MaeIII | GTNAC | 1 cut(s) | 426 |
| MalI | GATC | 2 cut(s) | 144, 176 |
| MbiI | CCGCTC | 1 cut(s) | 82 |
| MboI | GATC | 2 cut(s) | 142, 174 |
| MboII | GAAGA | 1 cut(s) | 175 |
| MflI | RGATCY | 1 cut(s) | 174 |
| MhlI | GDGCHC | 1 cut(s) | 355 |
| MlyI | GAGTC | 2 cut(s) | 197, 389 |
| MmeI | TCCRAC | 1 cut(s) | 96 |
| MnlI | CCTC | 8 cut(s) | 217, 238, 340, 361, 365, 382, 415, 491 |
| MseI | TTAA | 1 cut(s) | 213 |
| MspA1I | CMGCKG | 1 cut(s) | 403 |
| MspI | CCGG | 2 cut(s) | 55, 457 |
| MspR9I | CCNGG | 6 cut(s) | 55, 56, 89, 336, 457, 458 |
| MvaI | CCWGG | 2 cut(s) | 89, 336 |
| MvnI | CGCG | 1 cut(s) | 432 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 91, 254, 271, 305, 314, 326 |
| NciI | CCSGG | 4 cut(s) | 55, 56, 457, 458 |
| NdeII | GATC | 2 cut(s) | 142, 174 |
| NlaIII | CATG | 2 cut(s) | 130, 344 |
| NlaIV | GGNNCC | 4 cut(s) | 86, 256, 352, 550 |
| NmeAIII | GCCGAG | 1 cut(s) | 268 |
| NmuCI | GTSAC | 1 cut(s) | 426 |
| NspI | RCATGY | 1 cut(s) | 130 |
| PciI | ACATGT | 1 cut(s) | 126 |
| PfeI | GAWTC | 1 cut(s) | 381 |
| PleI | GAGTC | 2 cut(s) | 196, 389 |
| PpsI | GAGTC | 2 cut(s) | 196, 389 |
| PscI | ACATGT | 1 cut(s) | 126 |
| Psp1406I | AACGTT | 1 cut(s) | 69 |
| Psp6I | CCWGG | 2 cut(s) | 87, 334 |
| PspFI | CCCAGC | 1 cut(s) | 434 |
| PspGI | CCWGG | 2 cut(s) | 87, 334 |
| PspN4I | GGNNCC | 4 cut(s) | 86, 256, 352, 550 |
| PspPI | GGNCC | 1 cut(s) | 255 |
| PstI | CTGCAG | 1 cut(s) | 49 |
| PsuI | RGATCY | 1 cut(s) | 174 |
| SaqAI | TTAA | 1 cut(s) | 213 |
| Sau3AI | GATC | 2 cut(s) | 142, 174 |
| Sau96I | GGNCC | 1 cut(s) | 255 |
| SchI | GAGTC | 2 cut(s) | 197, 389 |
| ScrFI | CCNGG | 6 cut(s) | 55, 56, 89, 336, 457, 458 |
| SduI | GDGCHC | 1 cut(s) | 355 |
| SetI | ASST | 9 cut(s) | 66, 72, 90, 289, 426, 550, 559, 568, 573 |
| SfaNI | GCATC | 1 cut(s) | 31 |
| SfcI | CTRYAG | 1 cut(s) | 45 |
| SmaI | CCCGGG | 2 cut(s) | 56, 458 |
| SspMI | CTAG | 2 cut(s) | 221, 249 |
| StyD4I | CCNGG | 6 cut(s) | 53, 54, 87, 334, 455, 456 |
| TaaI | ACNGT | 2 cut(s) | 105, 472 |
| TaiI | ACGT | 1 cut(s) | 72 |
| TaqI | TCGA | 1 cut(s) | 12 |
| TauI | GCSGC | 7 cut(s) | 85, 155, 197, 220, 271, 274, 539 |
| TfiI | GAWTC | 1 cut(s) | 381 |
| Tru1I | TTAA | 1 cut(s) | 213 |
| Tru9I | TTAA | 1 cut(s) | 213 |
| TscAI | CASTG | 1 cut(s) | 319 |
| TseFI | GTSAC | 1 cut(s) | 426 |
| TseI | GCWGC | 6 cut(s) | 44, 136, 265, 305, 317, 446 |
| Tsp45I | GTSAC | 1 cut(s) | 426 |
| TspGWI | ACGGA | 1 cut(s) | 296 |
| TspMI | CCCGGG | 2 cut(s) | 54, 456 |
| TspRI | CASTG | 1 cut(s) | 319 |
| XceI | RCATGY | 1 cut(s) | 130 |
| XmaI | CCCGGG | 2 cut(s) | 54, 456 |
| XspI | CTAG | 2 cut(s) | 221, 249 |