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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 355 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 274 |
| AccII | CGCG | 1 cut(s) | 339 |
| AcoI | YGGCCR | 2 cut(s) | 114, 125 |
| AcsI | RAATTY | 2 cut(s) | 270, 306 |
| AcvI | CACGTG | 1 cut(s) | 123 |
| AcyI | GRCGYC | 1 cut(s) | 356 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 123, 274 |
| AflIII | ACRYGT | 2 cut(s) | 120, 131 |
| Alw21I | GWGCWC | 1 cut(s) | 222 |
| Alw26I | GTCTC | 1 cut(s) | 35 |
| Alw44I | GTGCAC | 1 cut(s) | 218 |
| AoxI | GGCC | 4 cut(s) | 71, 114, 125, 289 |
| ApaLI | GTGCAC | 1 cut(s) | 218 |
| ApeKI | GCWGC | 2 cut(s) | 159, 256 |
| ApoI | RAATTY | 2 cut(s) | 270, 306 |
| AspLEI | GCGC | 4 cut(s) | 33, 339, 341, 358 |
| AsuC2I | CCSGG | 1 cut(s) | 237 |
| AsuNHI | GCTAGC | 1 cut(s) | 142 |
| BaeGI | GKGCMC | 1 cut(s) | 222 |
| BanI | GGYRCC | 1 cut(s) | 355 |
| BbrPI | CACGTG | 1 cut(s) | 123 |
| Bbv12I | GWGCWC | 1 cut(s) | 222 |
| BbvI | GCAGC | 2 cut(s) | 146, 243 |
| BccI | CCATC | 1 cut(s) | 103 |
| BceAI | ACGGC | 3 cut(s) | 200, 238, 343 |
| BcnI | CCSGG | 1 cut(s) | 237 |
| BcoDI | GTCTC | 1 cut(s) | 35 |
| BfaI | CTAG | 3 cut(s) | 20, 62, 143 |
| BfoI | RGCGCY | 1 cut(s) | 359 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 205 |
| BglII | AGATCT | 1 cut(s) | 185 |
| BisI | GCNGC | 5 cut(s) | 59, 160, 170, 254, 257 |
| BlpI | GCTNAGC | 1 cut(s) | 34 |
| BlsI | GCNGC | 5 cut(s) | 60, 161, 171, 255, 258 |
| Bme1390I | CCNGG | 1 cut(s) | 237 |
| BmiI | GGNNCC | 1 cut(s) | 357 |
| BmrFI | CCNGG | 1 cut(s) | 237 |
| BmsI | GCATC | 1 cut(s) | 217 |
| BmtI | GCTAGC | 1 cut(s) | 146 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 32, 64 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 34 |
| BpuMI | CCSGG | 1 cut(s) | 237 |
| BsaAI | YACGTR | 1 cut(s) | 123 |
| BsaHI | GRCGYC | 1 cut(s) | 356 |
| BsaJI | CCNNGG | 1 cut(s) | 236 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 123, 274 |
| Bse118I | RCCGGY | 1 cut(s) | 199 |
| BseDI | CCNNGG | 1 cut(s) | 236 |
| BseGI | GGATG | 1 cut(s) | 184 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 123, 274 |
| BsePI | GCGCGC | 1 cut(s) | 337 |
| BseSI | GKGCMC | 1 cut(s) | 222 |
| BseXI | GCAGC | 2 cut(s) | 146, 243 |
| Bsh1236I | CGCG | 1 cut(s) | 339 |
| BshFI | GGCC | 4 cut(s) | 73, 116, 127, 291 |
| BshNI | GGYRCC | 1 cut(s) | 355 |
| BsiHKAI | GWGCWC | 1 cut(s) | 222 |
| BsiSI | CCGG | 2 cut(s) | 200, 236 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 123, 274 |
| BsmAI | GTCTC | 1 cut(s) | 35 |
| BsnI | GGCC | 4 cut(s) | 73, 116, 127, 291 |
| Bsp1286I | GDGCHC | 1 cut(s) | 222 |
| Bsp143I | GATC | 2 cut(s) | 185, 226 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 34 |
| BspANI | GGCC | 4 cut(s) | 73, 116, 127, 291 |
| BspFNI | CGCG | 1 cut(s) | 339 |
| BspLI | GGNNCC | 1 cut(s) | 357 |
| BspOI | GCTAGC | 1 cut(s) | 146 |
| BspT107I | GGYRCC | 1 cut(s) | 355 |
| BsrFI | RCCGGY | 1 cut(s) | 199 |
| BssAI | RCCGGY | 1 cut(s) | 199 |
| BssECI | CCNNGG | 1 cut(s) | 236 |
| BssHII | GCGCGC | 1 cut(s) | 337 |
| BssMI | GATC | 2 cut(s) | 185, 226 |
| BssNI | GRCGYC | 1 cut(s) | 356 |
| Bst6I | CTCTTC | 1 cut(s) | 18 |
| BstACI | GRCGYC | 1 cut(s) | 356 |
| BstBAI | YACGTR | 1 cut(s) | 123 |
| BstC8I | GCNNGC | 3 cut(s) | 144, 201, 339 |
| BstDEI | CTNAG | 1 cut(s) | 34 |
| BstF5I | GGATG | 1 cut(s) | 184 |
| BstFNI | CGCG | 1 cut(s) | 339 |
| BstH2I | RGCGCY | 1 cut(s) | 359 |
| BstHHI | GCGC | 4 cut(s) | 33, 339, 341, 358 |
| BstKTI | GATC | 2 cut(s) | 188, 229 |
| BstMAI | GTCTC | 1 cut(s) | 35 |
| BstMBI | GATC | 2 cut(s) | 185, 226 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 58, 205, 347 |
| BstNSI | RCATGY | 1 cut(s) | 135 |
| BstSCI | CCNGG | 1 cut(s) | 235 |
| BstSLI | GKGCMC | 1 cut(s) | 222 |
| BstUI | CGCG | 1 cut(s) | 339 |
| BstV1I | GCAGC | 2 cut(s) | 146, 243 |
| BstX2I | RGATCY | 1 cut(s) | 185 |
| BstYI | RGATCY | 1 cut(s) | 185 |
| BsuRI | GGCC | 4 cut(s) | 73, 116, 127, 291 |
| BtsCI | GGATG | 1 cut(s) | 184 |
| Cac8I | GCNNGC | 3 cut(s) | 144, 201, 339 |
| CfoI | GCGC | 4 cut(s) | 33, 339, 341, 358 |
| Cfr10I | RCCGGY | 1 cut(s) | 199 |
| CviAII | CATG | 2 cut(s) | 91, 132 |
| CviJI | RGCY | 7 cut(s) | 61, 73, 116, 127, 142, 159, 291 |
| CviKI_1 | RGCY | 7 cut(s) | 61, 73, 116, 127, 142, 159, 291 |
| DdeI | CTNAG | 1 cut(s) | 34 |
| DinI | GGCGCC | 1 cut(s) | 357 |
| DpnI | GATC | 2 cut(s) | 187, 228 |
| DpnII | GATC | 2 cut(s) | 185, 226 |
| EaeI | YGGCCR | 2 cut(s) | 114, 125 |
| Eam1104I | CTCTTC | 1 cut(s) | 18 |
| EarI | CTCTTC | 1 cut(s) | 18 |
| EciI | GGCGGA | 1 cut(s) | 240 |
| Eco72I | CACGTG | 1 cut(s) | 123 |
| EgeI | GGCGCC | 1 cut(s) | 357 |
| EheI | GGCGCC | 1 cut(s) | 357 |
| FaeI | CATG | 2 cut(s) | 94, 135 |
| FaiI | YATR | 4 cut(s) | 92, 107, 133, 320 |
| FatI | CATG | 2 cut(s) | 90, 131 |
| FauI | CCCGC | 2 cut(s) | 174, 196 |
| Fnu4HI | GCNGC | 5 cut(s) | 59, 160, 170, 254, 257 |
| FokI | GGATG | 1 cut(s) | 191 |
| Fsp4HI | GCNGC | 5 cut(s) | 59, 160, 170, 254, 257 |
| FspBI | CTAG | 3 cut(s) | 20, 62, 143 |
| GlaI | GCGC | 4 cut(s) | 32, 338, 340, 357 |
| GluI | GCNGC | 5 cut(s) | 59, 160, 170, 254, 257 |
| HaeII | RGCGCY | 1 cut(s) | 359 |
| HaeIII | GGCC | 4 cut(s) | 73, 116, 127, 291 |
| HapII | CCGG | 2 cut(s) | 200, 236 |
| HhaI | GCGC | 4 cut(s) | 33, 339, 341, 358 |
| Hin1I | GRCGYC | 1 cut(s) | 356 |
| Hin1II | CATG | 2 cut(s) | 94, 135 |
| Hin6I | GCGC | 4 cut(s) | 31, 337, 339, 356 |
| HinP1I | GCGC | 4 cut(s) | 31, 337, 339, 356 |
| HinfI | GANTC | 2 cut(s) | 241, 345 |
| HpaII | CCGG | 2 cut(s) | 200, 236 |
| Hpy166II | GTNNAC | 1 cut(s) | 220 |
| Hpy8I | GTNNAC | 1 cut(s) | 220 |
| HpyAV | CCTTC | 1 cut(s) | 169 |
| HpyCH4IV | ACGT | 1 cut(s) | 122 |
| HpyCH4V | TGCA | 1 cut(s) | 220 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 58, 205, 347 |
| HpyF3I | CTNAG | 1 cut(s) | 34 |
| HpySE526I | ACGT | 1 cut(s) | 122 |
| Hsp92I | GRCGYC | 1 cut(s) | 356 |
| Hsp92II | CATG | 2 cut(s) | 94, 135 |
| HspAI | GCGC | 4 cut(s) | 31, 337, 339, 356 |
| KasI | GGCGCC | 1 cut(s) | 355 |
| KroI | GCCGGC | 1 cut(s) | 199 |
| KroNI | GCCGGC | 1 cut(s) | 201 |
| Kzo9I | GATC | 2 cut(s) | 185, 226 |
| LpnPI | CCDG | 2 cut(s) | 213, 249 |
| Lsp1109I | GCAGC | 2 cut(s) | 146, 243 |
| LweI | GCATC | 1 cut(s) | 217 |
| MaeI | CTAG | 3 cut(s) | 20, 62, 143 |
| MaeII | ACGT | 1 cut(s) | 122 |
| MalI | GATC | 2 cut(s) | 187, 228 |
| MboI | GATC | 2 cut(s) | 185, 226 |
| MboII | GAAGA | 3 cut(s) | 35, 180, 221 |
| MflI | RGATCY | 1 cut(s) | 185 |
| MhlI | GDGCHC | 1 cut(s) | 222 |
| MluCI | AATT | 2 cut(s) | 270, 306 |
| Mly113I | GGCGCC | 1 cut(s) | 356 |
| MlyI | GAGTC | 1 cut(s) | 339 |
| MnlI | CCTC | 1 cut(s) | 302 |
| MreI | CGCCGGCG | 1 cut(s) | 199 |
| MroNI | GCCGGC | 1 cut(s) | 199 |
| MspA1I | CMGCKG | 1 cut(s) | 256 |
| MspI | CCGG | 2 cut(s) | 200, 236 |
| MspR9I | CCNGG | 1 cut(s) | 237 |
| MvnI | CGCG | 1 cut(s) | 339 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 58, 205, 347 |
| NaeI | GCCGGC | 1 cut(s) | 201 |
| NarI | GGCGCC | 1 cut(s) | 356 |
| NciI | CCSGG | 1 cut(s) | 237 |
| NdeII | GATC | 2 cut(s) | 185, 226 |
| NgoMIV | GCCGGC | 1 cut(s) | 199 |
| NheI | GCTAGC | 1 cut(s) | 142 |
| NlaIII | CATG | 2 cut(s) | 94, 135 |
| NlaIV | GGNNCC | 1 cut(s) | 357 |
| NspI | RCATGY | 1 cut(s) | 135 |
| PauI | GCGCGC | 1 cut(s) | 337 |
| PciI | ACATGT | 1 cut(s) | 131 |
| PdiI | GCCGGC | 1 cut(s) | 201 |
| PfeI | GAWTC | 1 cut(s) | 241 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 274 |
| PkrI | GCNGC | 5 cut(s) | 60, 161, 171, 255, 258 |
| PleI | GAGTC | 1 cut(s) | 339 |
| PluTI | GGCGCC | 1 cut(s) | 359 |
| PmaCI | CACGTG | 1 cut(s) | 123 |
| PmlI | CACGTG | 1 cut(s) | 123 |
| PpsI | GAGTC | 1 cut(s) | 339 |
| Ppu21I | YACGTR | 1 cut(s) | 123 |
| PscI | ACATGT | 1 cut(s) | 131 |
| PspCI | CACGTG | 1 cut(s) | 123 |
| PspN4I | GGNNCC | 1 cut(s) | 357 |
| PsuI | RGATCY | 1 cut(s) | 185 |
| PteI | GCGCGC | 1 cut(s) | 337 |
| SatI | GCNGC | 5 cut(s) | 59, 160, 170, 254, 257 |
| Sau3AI | GATC | 2 cut(s) | 185, 226 |
| SchI | GAGTC | 1 cut(s) | 339 |
| ScrFI | CCNGG | 1 cut(s) | 237 |
| SduI | GDGCHC | 1 cut(s) | 222 |
| SetI | ASST | 1 cut(s) | 125 |
| SfaNI | GCATC | 1 cut(s) | 217 |
| SfoI | GGCGCC | 1 cut(s) | 357 |
| SgrAI | CRCCGGYG | 1 cut(s) | 199 |
| Sse9I | AATT | 2 cut(s) | 270, 306 |
| SspDI | GGCGCC | 1 cut(s) | 355 |
| SspMI | CTAG | 3 cut(s) | 20, 62, 143 |
| StyD4I | CCNGG | 1 cut(s) | 235 |
| TaiI | ACGT | 1 cut(s) | 125 |
| TaqI | TCGA | 1 cut(s) | 343 |
| TasI | AATT | 2 cut(s) | 270, 306 |
| TauI | GCSGC | 3 cut(s) | 61, 172, 256 |
| TfiI | GAWTC | 1 cut(s) | 241 |
| TseI | GCWGC | 2 cut(s) | 159, 256 |
| TspDTI | ATGAA | 1 cut(s) | 79 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 274 |
| VneI | GTGCAC | 1 cut(s) | 218 |
| XapI | RAATTY | 2 cut(s) | 270, 306 |
| XceI | RCATGY | 1 cut(s) | 135 |
| XspI | CTAG | 3 cut(s) | 20, 62, 143 |