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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 876 |
| AccB1I | GGYRCC | 3 cut(s) | 635, 671, 764 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 681 |
| AccBSI | CCGCTC | 5 cut(s) | 73, 100, 238, 379, 771 |
| AccI | GTMKAC | 1 cut(s) | 137 |
| AccII | CGCG | 1 cut(s) | 558 |
| AclWI | GGATC | 1 cut(s) | 466 |
| AcoI | YGGCCR | 4 cut(s) | 363, 447, 501, 564 |
| AcuI | CTGAAG | 4 cut(s) | 145, 461, 902, 917 |
| AcvI | CACGTG | 1 cut(s) | 845 |
| AcyI | GRCGYC | 4 cut(s) | 215, 316, 672, 692 |
| AfaI | GTAC | 2 cut(s) | 132, 708 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 271, 294, 325, 378, 481, 562, 681, 754, 835 |
| AgsI | TTSAA | 1 cut(s) | 929 |
| AjnI | CCWGG | 2 cut(s) | 227, 384 |
| AluBI | AGCT | 3 cut(s) | 193, 244, 716 |
| AluI | AGCT | 3 cut(s) | 193, 244, 716 |
| Alw21I | GWGCWC | 2 cut(s) | 246, 850 |
| Alw26I | GTCTC | 1 cut(s) | 535 |
| AlwI | GGATC | 1 cut(s) | 466 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 880 |
| Ama87I | CYCGRG | 1 cut(s) | 772 |
| AoxI | GGCC | 8 cut(s) | 262, 285, 327, 363, 447, 501, 564, 630 |
| ApeKI | GCWGC | 9 cut(s) | 14, 114, 193, 223, 341, 433, 560, 658, 661 |
| AspLEI | GCGC | 3 cut(s) | 560, 674, 794 |
| AspS9I | GGNCC | 3 cut(s) | 262, 286, 382 |
| AsuHPI | GGTGA | 3 cut(s) | 80, 536, 697 |
| AvaI | CYCGRG | 1 cut(s) | 772 |
| AvaII | GGWCC | 1 cut(s) | 382 |
| AxyI | CCTNAGG | 1 cut(s) | 539 |
| BaeGI | GKGCMC | 3 cut(s) | 180, 640, 769 |
| BanI | GGYRCC | 3 cut(s) | 635, 671, 764 |
| BanII | GRGCYC | 1 cut(s) | 246 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 114, 146 |
| BauI | CACGAG | 1 cut(s) | 197 |
| BbrPI | CACGTG | 1 cut(s) | 845 |
| Bbv12I | GWGCWC | 2 cut(s) | 246, 850 |
| BbvCI | CCTCAGC | 1 cut(s) | 546 |
| BbvI | GCAGC | 8 cut(s) | 101, 180, 235, 353, 420, 547, 645, 673 |
| BccI | CCATC | 2 cut(s) | 755, 927 |
| BceAI | ACGGC | 4 cut(s) | 128, 183, 350, 530 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 320, 354 |
| BciT130I | CCWGG | 2 cut(s) | 229, 386 |
| BcoDI | GTCTC | 1 cut(s) | 535 |
| BfaI | CTAG | 3 cut(s) | 29, 495, 641 |
| BfmI | CTRYAG | 2 cut(s) | 266, 659 |
| BfoI | RGCGCY | 2 cut(s) | 675, 795 |
| BfuAI | ACCTGC | 1 cut(s) | 876 |
| BlpI | GCTNAGC | 1 cut(s) | 189 |
| Bme1390I | CCNGG | 2 cut(s) | 229, 386 |
| Bme18I | GGWCC | 1 cut(s) | 382 |
| BmeT110I | CYCGRG | 1 cut(s) | 772 |
| BmgT120I | GGNCC | 3 cut(s) | 262, 286, 382 |
| BmiI | GGNNCC | 5 cut(s) | 383, 554, 637, 673, 766 |
| BmrFI | CCNGG | 2 cut(s) | 229, 386 |
| BmrI | ACTGGG | 2 cut(s) | 691, 823 |
| BmsI | GCATC | 3 cut(s) | 328, 712, 882 |
| BmuI | ACTGGG | 2 cut(s) | 691, 823 |
| BpmI | CTGGAG | 2 cut(s) | 539, 857 |
| Bpu10I | CCTNAGC | 3 cut(s) | 245, 546, 717 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 189 |
| BsaAI | YACGTR | 1 cut(s) | 845 |
| BsaHI | GRCGYC | 4 cut(s) | 215, 316, 672, 692 |
| BsaJI | CCNNGG | 4 cut(s) | 227, 228, 352, 504 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 68, 98 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 271, 294, 325, 378, 481, 562, 681, 754, 835 |
| Bse118I | RCCGGY | 2 cut(s) | 632, 700 |
| Bse1I | ACTGG | 2 cut(s) | 686, 829 |
| Bse21I | CCTNAGG | 1 cut(s) | 539 |
| BseBI | CCWGG | 2 cut(s) | 229, 386 |
| BseDI | CCNNGG | 4 cut(s) | 227, 228, 352, 504 |
| BseGI | GGATG | 2 cut(s) | 727, 811 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 271, 294, 325, 378, 481, 562, 681, 754, 835 |
| BseMII | CTCAG | 5 cut(s) | 180, 259, 530, 537, 767 |
| BseNI | ACTGG | 2 cut(s) | 686, 829 |
| BseRI | GAGGAG | 1 cut(s) | 266 |
| BseSI | GKGCMC | 3 cut(s) | 180, 640, 769 |
| BseX3I | CGGCCG | 1 cut(s) | 564 |
| BseXI | GCAGC | 8 cut(s) | 101, 180, 235, 353, 420, 547, 645, 673 |
| BseYI | CCCAGC | 2 cut(s) | 103, 813 |
| BsgI | GTGCAG | 1 cut(s) | 179 |
| Bsh1236I | CGCG | 1 cut(s) | 558 |
| Bsh1285I | CGRYCG | 2 cut(s) | 567, 705 |
| BshFI | GGCC | 8 cut(s) | 264, 287, 329, 365, 449, 503, 566, 632 |
| BshNI | GGYRCC | 3 cut(s) | 635, 671, 764 |
| BsiEI | CGRYCG | 2 cut(s) | 567, 705 |
| BsiHKAI | GWGCWC | 2 cut(s) | 246, 850 |
| BsiHKCI | CYCGRG | 1 cut(s) | 772 |
| BsiSI | CCGG | 3 cut(s) | 633, 701, 800 |
| BslFI | GGGAC | 3 cut(s) | 287, 395, 412 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 271, 294, 325, 378, 481, 562, 681, 754, 835 |
| BsmAI | GTCTC | 1 cut(s) | 535 |
| BsmFI | GGGAC | 3 cut(s) | 287, 395, 412 |
| BsnI | GGCC | 8 cut(s) | 264, 287, 329, 365, 449, 503, 566, 632 |
| BsoBI | CYCGRG | 1 cut(s) | 772 |
| Bsp1286I | GDGCHC | 5 cut(s) | 180, 246, 640, 769, 850 |
| Bsp143I | GATC | 2 cut(s) | 439, 471 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 189 |
| BspANI | GGCC | 8 cut(s) | 264, 287, 329, 365, 449, 503, 566, 632 |
| BspCNI | CTCAG | 5 cut(s) | 181, 258, 531, 538, 766 |
| BspFNI | CGCG | 1 cut(s) | 558 |
| BspLI | GGNNCC | 5 cut(s) | 383, 554, 637, 673, 766 |
| BspMAI | CTGCAG | 2 cut(s) | 270, 663 |
| BspMI | ACCTGC | 1 cut(s) | 876 |
| BspPI | GGATC | 1 cut(s) | 466 |
| BspT107I | GGYRCC | 3 cut(s) | 635, 671, 764 |
| BsrBI | CCGCTC | 5 cut(s) | 73, 100, 238, 379, 771 |
| BsrFI | RCCGGY | 2 cut(s) | 632, 700 |
| BsrI | ACTGG | 2 cut(s) | 686, 829 |
| BssAI | RCCGGY | 2 cut(s) | 632, 700 |
| BssECI | CCNNGG | 4 cut(s) | 227, 228, 352, 504 |
| BssMI | GATC | 2 cut(s) | 439, 471 |
| BssNI | GRCGYC | 4 cut(s) | 215, 316, 672, 692 |
| BssSI | CACGAG | 1 cut(s) | 197 |
| Bst2BI | CACGAG | 1 cut(s) | 197 |
| Bst2UI | CCWGG | 2 cut(s) | 229, 386 |
| Bst4CI | ACNGT | 3 cut(s) | 68, 135, 335 |
| BstACI | GRCGYC | 4 cut(s) | 215, 316, 672, 692 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 347 |
| BstBAI | YACGTR | 1 cut(s) | 845 |
| BstC8I | GCNNGC | 5 cut(s) | 98, 266, 501, 714, 769 |
| BstDEI | CTNAG | 6 cut(s) | 189, 245, 539, 546, 717, 753 |
| BstDSI | CCRYGG | 1 cut(s) | 352 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 323 |
| BstF5I | GGATG | 2 cut(s) | 727, 811 |
| BstFNI | CGCG | 1 cut(s) | 558 |
| BstH2I | RGCGCY | 2 cut(s) | 675, 795 |
| BstHHI | GCGC | 3 cut(s) | 560, 674, 794 |
| BstKTI | GATC | 2 cut(s) | 442, 474 |
| BstMAI | GTCTC | 1 cut(s) | 535 |
| BstMBI | GATC | 2 cut(s) | 439, 471 |
| BstMCI | CGRYCG | 2 cut(s) | 567, 705 |
| BstNI | CCWGG | 2 cut(s) | 229, 386 |
| BstSCI | CCNGG | 2 cut(s) | 227, 384 |
| BstSFI | CTRYAG | 2 cut(s) | 266, 659 |
| BstSLI | GKGCMC | 3 cut(s) | 180, 640, 769 |
| BstUI | CGCG | 1 cut(s) | 558 |
| BstV1I | GCAGC | 8 cut(s) | 101, 180, 235, 353, 420, 547, 645, 673 |
| BstX2I | RGATCY | 1 cut(s) | 471 |
| BstYI | RGATCY | 1 cut(s) | 471 |
| BstZI | CGGCCG | 1 cut(s) | 564 |
| Bsu36I | CCTNAGG | 1 cut(s) | 539 |
| BsuRI | GGCC | 8 cut(s) | 264, 287, 329, 365, 449, 503, 566, 632 |
| BtgI | CCRYGG | 1 cut(s) | 352 |
| BtsCI | GGATG | 2 cut(s) | 727, 811 |
| BveI | ACCTGC | 1 cut(s) | 876 |
| Cac8I | GCNNGC | 5 cut(s) | 98, 266, 501, 714, 769 |
| CaiI | CAGNNNCTG | 1 cut(s) | 880 |
| CciNI | GCGGCCGC | 1 cut(s) | 564 |
| CfoI | GCGC | 3 cut(s) | 560, 674, 794 |
| Cfr10I | RCCGGY | 2 cut(s) | 632, 700 |
| Cfr13I | GGNCC | 3 cut(s) | 262, 286, 382 |
| CseI | GACGC | 4 cut(s) | 204, 324, 681, 886 |
| Csp6I | GTAC | 2 cut(s) | 131, 707 |
| CviAII | CATG | 3 cut(s) | 19, 290, 697 |
| CviQI | GTAC | 2 cut(s) | 131, 707 |
| DdeI | CTNAG | 6 cut(s) | 189, 245, 539, 546, 717, 753 |
| DinI | GGCGCC | 1 cut(s) | 673 |
| DpnI | GATC | 2 cut(s) | 441, 473 |
| DpnII | GATC | 2 cut(s) | 439, 471 |
| EaeI | YGGCCR | 4 cut(s) | 363, 447, 501, 564 |
| EagI | CGGCCG | 1 cut(s) | 564 |
| EciI | GGCGGA | 2 cut(s) | 611, 818 |
| Ecl136II | GAGCTC | 1 cut(s) | 244 |
| EclXI | CGGCCG | 1 cut(s) | 564 |
| Eco24I | GRGCYC | 1 cut(s) | 246 |
| Eco47I | GGWCC | 1 cut(s) | 382 |
| Eco52I | CGGCCG | 1 cut(s) | 564 |
| Eco53kI | GAGCTC | 1 cut(s) | 244 |
| Eco57I | CTGAAG | 4 cut(s) | 145, 461, 902, 917 |
| Eco72I | CACGTG | 1 cut(s) | 845 |
| Eco81I | CCTNAGG | 1 cut(s) | 539 |
| Eco88I | CYCGRG | 1 cut(s) | 772 |
| EcoICRI | GAGCTC | 1 cut(s) | 244 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 323 |
| EcoO109I | RGGNCCY | 1 cut(s) | 382 |
| EcoRII | CCWGG | 2 cut(s) | 227, 384 |
| EcoT38I | GRGCYC | 1 cut(s) | 246 |
| EgeI | GGCGCC | 1 cut(s) | 673 |
| EheI | GGCGCC | 1 cut(s) | 673 |
| FaeI | CATG | 3 cut(s) | 22, 293, 700 |
| FaiI | YATR | 8 cut(s) | 20, 291, 346, 348, 425, 583, 603, 698 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 778, 810 |
| FaqI | GGGAC | 3 cut(s) | 287, 395, 412 |
| FatI | CATG | 3 cut(s) | 18, 289, 696 |
| FauI | CCCGC | 5 cut(s) | 66, 231, 372, 474, 776 |
| FauNDI | CATATG | 1 cut(s) | 346 |
| FblI | GTMKAC | 1 cut(s) | 137 |
| FokI | GGATG | 2 cut(s) | 734, 818 |
| FriOI | GRGCYC | 1 cut(s) | 246 |
| FspBI | CTAG | 3 cut(s) | 29, 495, 641 |
| GlaI | GCGC | 3 cut(s) | 559, 673, 793 |
| GsaI | CCCAGC | 2 cut(s) | 107, 817 |
| GsuI | CTGGAG | 2 cut(s) | 539, 857 |
| HaeII | RGCGCY | 2 cut(s) | 675, 795 |
| HaeIII | GGCC | 8 cut(s) | 264, 287, 329, 365, 449, 503, 566, 632 |
| HapII | CCGG | 3 cut(s) | 633, 701, 800 |
| HgaI | GACGC | 4 cut(s) | 204, 324, 681, 886 |
| HhaI | GCGC | 3 cut(s) | 560, 674, 794 |
| Hin1I | GRCGYC | 4 cut(s) | 215, 316, 672, 692 |
| Hin1II | CATG | 3 cut(s) | 22, 293, 700 |
| Hin6I | GCGC | 3 cut(s) | 558, 672, 792 |
| HinP1I | GCGC | 3 cut(s) | 558, 672, 792 |
| HincII | GTYRAC | 2 cut(s) | 148, 615 |
| HindII | GTYRAC | 2 cut(s) | 148, 615 |
| HinfI | GANTC | 5 cut(s) | 32, 485, 578, 809, 820 |
| HpaII | CCGG | 3 cut(s) | 633, 701, 800 |
| HphI | GGTGA | 3 cut(s) | 80, 536, 697 |
| Hpy166II | GTNNAC | 3 cut(s) | 138, 148, 615 |
| Hpy188I | TCNGA | 1 cut(s) | 835 |
| Hpy188III | TCNNGA | 1 cut(s) | 874 |
| Hpy8I | GTNNAC | 3 cut(s) | 138, 148, 615 |
| Hpy99I | CGWCG | 4 cut(s) | 220, 318, 371, 733 |
| HpyAV | CCTTC | 8 cut(s) | 116, 169, 485, 601, 622, 682, 877, 892 |
| HpyCH4III | ACNGT | 3 cut(s) | 68, 135, 335 |
| HpyCH4IV | ACGT | 1 cut(s) | 844 |
| HpyCH4V | TGCA | 5 cut(s) | 196, 268, 341, 436, 661 |
| HpyF3I | CTNAG | 6 cut(s) | 189, 245, 539, 546, 717, 753 |
| HpySE526I | ACGT | 1 cut(s) | 844 |
| Hsp92I | GRCGYC | 4 cut(s) | 215, 316, 672, 692 |
| Hsp92II | CATG | 3 cut(s) | 22, 293, 700 |
| HspAI | GCGC | 3 cut(s) | 558, 672, 792 |
| KasI | GGCGCC | 1 cut(s) | 671 |
| Kzo9I | GATC | 2 cut(s) | 439, 471 |
| LmnI | GCTCC | 6 cut(s) | 241, 310, 415, 552, 730, 876 |
| Lsp1109I | GCAGC | 8 cut(s) | 101, 180, 235, 353, 420, 547, 645, 673 |
| LweI | GCATC | 3 cut(s) | 328, 712, 882 |
| MaeI | CTAG | 3 cut(s) | 29, 495, 641 |
| MaeII | ACGT | 1 cut(s) | 844 |
| MaeIII | GTNAC | 1 cut(s) | 840 |
| MalI | GATC | 2 cut(s) | 441, 473 |
| MbiI | CCGCTC | 5 cut(s) | 73, 100, 238, 379, 771 |
| MboI | GATC | 2 cut(s) | 439, 471 |
| MflI | RGATCY | 1 cut(s) | 471 |
| MhlI | GDGCHC | 5 cut(s) | 180, 246, 640, 769, 850 |
| MluCI | AATT | 1 cut(s) | 401 |
| Mly113I | GGCGCC | 1 cut(s) | 672 |
| MlyI | GAGTC | 5 cut(s) | 26, 494, 587, 803, 814 |
| MmeI | TCCRAC | 2 cut(s) | 393, 813 |
| MseI | TTAA | 1 cut(s) | 510 |
| MspA1I | CMGCKG | 2 cut(s) | 481, 572 |
| MspI | CCGG | 3 cut(s) | 633, 701, 800 |
| MspR9I | CCNGG | 2 cut(s) | 229, 386 |
| MvaI | CCWGG | 2 cut(s) | 229, 386 |
| MvnI | CGCG | 1 cut(s) | 558 |
| NarI | GGCGCC | 1 cut(s) | 672 |
| NdeI | CATATG | 1 cut(s) | 346 |
| NdeII | GATC | 2 cut(s) | 439, 471 |
| NlaIII | CATG | 3 cut(s) | 22, 293, 700 |
| NlaIV | GGNNCC | 5 cut(s) | 383, 554, 637, 673, 766 |
| NmeAIII | GCCGAG | 3 cut(s) | 76, 529, 931 |
| NmuCI | GTSAC | 1 cut(s) | 840 |
| NotI | GCGGCCGC | 1 cut(s) | 564 |
| PasI | CCCWGGG | 1 cut(s) | 228 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 681 |
| PleI | GAGTC | 5 cut(s) | 26, 493, 586, 803, 814 |
| PluTI | GGCGCC | 1 cut(s) | 675 |
| PmaCI | CACGTG | 1 cut(s) | 845 |
| PmlI | CACGTG | 1 cut(s) | 845 |
| PpsI | GAGTC | 5 cut(s) | 26, 493, 586, 803, 814 |
| Ppu21I | YACGTR | 1 cut(s) | 845 |
| PpuMI | RGGWCCY | 1 cut(s) | 382 |
| Psp124BI | GAGCTC | 1 cut(s) | 246 |
| Psp5II | RGGWCCY | 1 cut(s) | 382 |
| Psp6I | CCWGG | 2 cut(s) | 227, 384 |
| PspCI | CACGTG | 1 cut(s) | 845 |
| PspFI | CCCAGC | 2 cut(s) | 103, 813 |
| PspGI | CCWGG | 2 cut(s) | 227, 384 |
| PspN4I | GGNNCC | 5 cut(s) | 383, 554, 637, 673, 766 |
| PspPI | GGNCC | 3 cut(s) | 262, 286, 382 |
| PspPPI | RGGWCCY | 1 cut(s) | 382 |
| PstI | CTGCAG | 2 cut(s) | 270, 663 |
| PstNI | CAGNNNCTG | 1 cut(s) | 880 |
| PsuI | RGATCY | 1 cut(s) | 471 |
| RsaI | GTAC | 2 cut(s) | 132, 708 |
| RsaNI | GTAC | 2 cut(s) | 131, 707 |
| SacI | GAGCTC | 1 cut(s) | 246 |
| SaqAI | TTAA | 1 cut(s) | 510 |
| Sau3AI | GATC | 2 cut(s) | 439, 471 |
| Sau96I | GGNCC | 3 cut(s) | 262, 286, 382 |
| SchI | GAGTC | 5 cut(s) | 26, 494, 587, 803, 814 |
| ScrFI | CCNGG | 2 cut(s) | 229, 386 |
| SduI | GDGCHC | 5 cut(s) | 180, 246, 640, 769, 850 |
| SfaNI | GCATC | 3 cut(s) | 328, 712, 882 |
| SfcI | CTRYAG | 2 cut(s) | 266, 659 |
| SfoI | GGCGCC | 1 cut(s) | 673 |
| SinI | GGWCC | 1 cut(s) | 382 |
| Sse9I | AATT | 1 cut(s) | 401 |
| SspDI | GGCGCC | 1 cut(s) | 671 |
| SspMI | CTAG | 3 cut(s) | 29, 495, 641 |
| SstI | GAGCTC | 1 cut(s) | 246 |
| StyD4I | CCNGG | 2 cut(s) | 227, 384 |
| TaaI | ACNGT | 3 cut(s) | 68, 135, 335 |
| TaiI | ACGT | 1 cut(s) | 847 |
| TaqI | TCGA | 2 cut(s) | 218, 850 |
| TaqII | GACCGA | 1 cut(s) | 632 |
| TasI | AATT | 1 cut(s) | 401 |
| TauI | GCSGC | 9 cut(s) | 103, 215, 452, 494, 558, 566, 569, 572, 860 |
| Tru1I | TTAA | 1 cut(s) | 510 |
| Tru9I | TTAA | 1 cut(s) | 510 |
| TseFI | GTSAC | 1 cut(s) | 840 |
| TseI | GCWGC | 9 cut(s) | 14, 114, 193, 223, 341, 433, 560, 658, 661 |
| Tsp45I | GTSAC | 1 cut(s) | 840 |
| TspGWI | ACGGA | 2 cut(s) | 406, 717 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 681 |
| VpaK11BI | GGWCC | 1 cut(s) | 382 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 323 |
| XmiI | GTMKAC | 1 cut(s) | 137 |
| XspI | CTAG | 3 cut(s) | 29, 495, 641 |