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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 425 |
| Acc65I | GGTACC | 1 cut(s) | 416 |
| AccB1I | GGYRCC | 1 cut(s) | 416 |
| AccBSI | CCGCTC | 1 cut(s) | 73 |
| AciI | CCGC | 9 cut(s) | 23, 26, 73, 118, 278, 356, 410, 485, 488 |
| AclWI | GGATC | 2 cut(s) | 148, 462 |
| AcsI | RAATTY | 1 cut(s) | 146 |
| AfaI | GTAC | 2 cut(s) | 397, 418 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 60, 117, 163, 370 |
| AgsI | TTSAA | 1 cut(s) | 161 |
| AjnI | CCWGG | 1 cut(s) | 219 |
| AleI | CACNNNNGTG | 1 cut(s) | 405 |
| AluBI | AGCT | 3 cut(s) | 15, 94, 199 |
| AluI | AGCT | 3 cut(s) | 15, 94, 199 |
| Alw26I | GTCTC | 4 cut(s) | 91, 254, 296, 379 |
| AlwI | GGATC | 2 cut(s) | 148, 462 |
| AoxI | GGCC | 2 cut(s) | 291, 312 |
| ApeKI | GCWGC | 3 cut(s) | 115, 173, 248 |
| ApoI | RAATTY | 1 cut(s) | 146 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 33, 65, 451, 483 |
| Asp718I | GGTACC | 1 cut(s) | 416 |
| AsuHPI | GGTGA | 1 cut(s) | 202 |
| BanI | GGYRCC | 1 cut(s) | 416 |
| BanII | GRGCYC | 1 cut(s) | 437 |
| BbvCI | CCTCAGC | 1 cut(s) | 186 |
| BbvI | GCAGC | 3 cut(s) | 102, 160, 260 |
| BccI | CCATC | 1 cut(s) | 407 |
| BceAI | ACGGC | 1 cut(s) | 38 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 305, 339, 487, 521 |
| BciT130I | CCWGG | 1 cut(s) | 221 |
| BcoDI | GTCTC | 4 cut(s) | 91, 254, 296, 379 |
| BfaI | CTAG | 2 cut(s) | 95, 177 |
| BisI | GCNGC | 5 cut(s) | 24, 116, 174, 249, 488 |
| BlsI | GCNGC | 5 cut(s) | 25, 117, 175, 250, 489 |
| Bme1390I | CCNGG | 1 cut(s) | 221 |
| BmiI | GGNNCC | 1 cut(s) | 418 |
| BmrFI | CCNGG | 1 cut(s) | 221 |
| BmrI | ACTGGG | 1 cut(s) | 358 |
| BmsI | GCATC | 3 cut(s) | 10, 19, 502 |
| BmuI | ACTGGG | 1 cut(s) | 358 |
| BpmI | CTGGAG | 1 cut(s) | 221 |
| Bpu10I | CCTNAGC | 2 cut(s) | 135, 186 |
| BsaI | GGTCTC | 1 cut(s) | 379 |
| BsaJI | CCNNGG | 3 cut(s) | 34, 220, 255 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 60, 117, 163, 370 |
| Bse1I | ACTGG | 1 cut(s) | 364 |
| BseBI | CCWGG | 1 cut(s) | 221 |
| BseDI | CCNNGG | 3 cut(s) | 34, 220, 255 |
| BseGI | GGATG | 2 cut(s) | 34, 418 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 60, 117, 163, 370 |
| BseMII | CTCAG | 4 cut(s) | 177, 291, 360, 383 |
| BseNI | ACTGG | 1 cut(s) | 364 |
| BseXI | GCAGC | 3 cut(s) | 102, 160, 260 |
| BshFI | GGCC | 2 cut(s) | 293, 314 |
| BshNI | GGYRCC | 1 cut(s) | 416 |
| BslFI | GGGAC | 1 cut(s) | 77 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 60, 117, 163, 370 |
| BsmAI | GTCTC | 4 cut(s) | 91, 254, 296, 379 |
| BsmBI | CGTCTC | 3 cut(s) | 91, 254, 296 |
| BsmFI | GGGAC | 1 cut(s) | 77 |
| BsnI | GGCC | 2 cut(s) | 293, 314 |
| Bso31I | GGTCTC | 1 cut(s) | 379 |
| Bsp1286I | GDGCHC | 1 cut(s) | 437 |
| Bsp143I | GATC | 3 cut(s) | 79, 153, 454 |
| BspACI | CCGC | 9 cut(s) | 23, 26, 73, 118, 278, 356, 410, 485, 488 |
| BspANI | GGCC | 2 cut(s) | 293, 314 |
| BspCNI | CTCAG | 4 cut(s) | 178, 292, 361, 384 |
| BspLI | GGNNCC | 1 cut(s) | 418 |
| BspPI | GGATC | 2 cut(s) | 148, 462 |
| BspT107I | GGYRCC | 1 cut(s) | 416 |
| BspTNI | GGTCTC | 1 cut(s) | 379 |
| BsrBI | CCGCTC | 1 cut(s) | 73 |
| BsrI | ACTGG | 1 cut(s) | 364 |
| BssECI | CCNNGG | 3 cut(s) | 34, 220, 255 |
| BssMI | GATC | 3 cut(s) | 79, 153, 454 |
| Bst2UI | CCWGG | 1 cut(s) | 221 |
| Bst4CI | ACNGT | 2 cut(s) | 256, 505 |
| BstC8I | GCNNGC | 3 cut(s) | 13, 217, 385 |
| BstDEI | CTNAG | 5 cut(s) | 135, 186, 300, 369, 392 |
| BstDSI | CCRYGG | 2 cut(s) | 34, 255 |
| BstF5I | GGATG | 2 cut(s) | 34, 418 |
| BstKTI | GATC | 3 cut(s) | 82, 156, 457 |
| BstMAI | GTCTC | 4 cut(s) | 91, 254, 296, 379 |
| BstMBI | GATC | 3 cut(s) | 79, 153, 454 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 29, 182, 248, 484 |
| BstNI | CCWGG | 1 cut(s) | 221 |
| BstSCI | CCNGG | 1 cut(s) | 219 |
| BstV1I | GCAGC | 3 cut(s) | 102, 160, 260 |
| BstX2I | RGATCY | 1 cut(s) | 153 |
| BstYI | RGATCY | 1 cut(s) | 153 |
| BsuRI | GGCC | 2 cut(s) | 293, 314 |
| BtgI | CCRYGG | 2 cut(s) | 34, 255 |
| BtsCI | GGATG | 2 cut(s) | 34, 418 |
| Cac8I | GCNNGC | 3 cut(s) | 13, 217, 385 |
| CseI | GACGC | 1 cut(s) | 315 |
| Csp6I | GTAC | 2 cut(s) | 396, 417 |
| CviQI | GTAC | 2 cut(s) | 396, 417 |
| DdeI | CTNAG | 5 cut(s) | 135, 186, 300, 369, 392 |
| DpnI | GATC | 3 cut(s) | 81, 155, 456 |
| DpnII | GATC | 3 cut(s) | 79, 153, 454 |
| DraI | TTTAAA | 1 cut(s) | 268 |
| EciI | GGCGGA | 2 cut(s) | 41, 293 |
| Eco24I | GRGCYC | 1 cut(s) | 437 |
| Eco31I | GGTCTC | 1 cut(s) | 379 |
| EcoRII | CCWGG | 1 cut(s) | 219 |
| EcoT38I | GRGCYC | 1 cut(s) | 437 |
| Esp3I | CGTCTC | 3 cut(s) | 91, 254, 296 |
| FaiI | YATR | 4 cut(s) | 107, 296, 324, 425 |
| FaqI | GGGAC | 1 cut(s) | 77 |
| FauI | CCCGC | 1 cut(s) | 111 |
| Fnu4HI | GCNGC | 5 cut(s) | 24, 116, 174, 249, 488 |
| FokI | GGATG | 2 cut(s) | 41, 425 |
| FriOI | GRGCYC | 1 cut(s) | 437 |
| Fsp4HI | GCNGC | 5 cut(s) | 24, 116, 174, 249, 488 |
| FspBI | CTAG | 2 cut(s) | 95, 177 |
| GluI | GCNGC | 5 cut(s) | 24, 116, 174, 249, 488 |
| GsuI | CTGGAG | 1 cut(s) | 221 |
| HaeIII | GGCC | 2 cut(s) | 293, 314 |
| HgaI | GACGC | 1 cut(s) | 315 |
| HinfI | GANTC | 2 cut(s) | 339, 463 |
| HphI | GGTGA | 1 cut(s) | 202 |
| Hpy188I | TCNGA | 5 cut(s) | 331, 348, 370, 454, 475 |
| Hpy188III | TCNNGA | 1 cut(s) | 391 |
| Hpy99I | CGWCG | 2 cut(s) | 310, 335 |
| HpyAV | CCTTC | 3 cut(s) | 167, 283, 304 |
| HpyCH4III | ACNGT | 2 cut(s) | 256, 505 |
| HpyCH4IV | ACGT | 2 cut(s) | 238, 263 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 29, 182, 248, 484 |
| HpyF3I | CTNAG | 5 cut(s) | 135, 186, 300, 369, 392 |
| HpySE526I | ACGT | 2 cut(s) | 238, 263 |
| KpnI | GGTACC | 1 cut(s) | 420 |
| Kzo9I | GATC | 3 cut(s) | 79, 153, 454 |
| LmnI | GCTCC | 1 cut(s) | 70 |
| LpnPI | CCDG | 7 cut(s) | 185, 206, 233, 369, 377, 404, 476 |
| Lsp1109I | GCAGC | 3 cut(s) | 102, 160, 260 |
| LweI | GCATC | 3 cut(s) | 10, 19, 502 |
| MaeI | CTAG | 2 cut(s) | 95, 177 |
| MaeII | ACGT | 2 cut(s) | 238, 263 |
| MalI | GATC | 3 cut(s) | 81, 155, 456 |
| MbiI | CCGCTC | 1 cut(s) | 73 |
| MboI | GATC | 3 cut(s) | 79, 153, 454 |
| MboII | GAAGA | 1 cut(s) | 205 |
| MflI | RGATCY | 1 cut(s) | 153 |
| MhlI | GDGCHC | 1 cut(s) | 437 |
| MluCI | AATT | 2 cut(s) | 41, 146 |
| MlyI | GAGTC | 2 cut(s) | 333, 472 |
| MmeI | TCCRAC | 2 cut(s) | 354, 432 |
| MnlI | CCTC | 4 cut(s) | 181, 202, 223, 364 |
| MseI | TTAA | 1 cut(s) | 267 |
| MslI | CAYNNNNRTG | 1 cut(s) | 405 |
| MspR9I | CCNGG | 1 cut(s) | 221 |
| MssI | GTTTAAAC | 1 cut(s) | 268 |
| MvaI | CCWGG | 1 cut(s) | 221 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 29, 182, 248, 484 |
| NdeII | GATC | 3 cut(s) | 79, 153, 454 |
| NlaIV | GGNNCC | 1 cut(s) | 418 |
| NmeAIII | GCCGAG | 2 cut(s) | 340, 456 |
| OliI | CACNNNNGTG | 1 cut(s) | 405 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 458 |
| PkrI | GCNGC | 5 cut(s) | 25, 117, 175, 250, 489 |
| PleI | GAGTC | 2 cut(s) | 333, 471 |
| PmeI | GTTTAAAC | 1 cut(s) | 268 |
| PpsI | GAGTC | 2 cut(s) | 333, 471 |
| PsiI | TTATAA | 1 cut(s) | 425 |
| Psp6I | CCWGG | 1 cut(s) | 219 |
| PspGI | CCWGG | 1 cut(s) | 219 |
| PspN4I | GGNNCC | 1 cut(s) | 418 |
| PsuI | RGATCY | 1 cut(s) | 153 |
| RsaI | GTAC | 2 cut(s) | 397, 418 |
| RsaNI | GTAC | 2 cut(s) | 396, 417 |
| RseI | CAYNNNNRTG | 1 cut(s) | 405 |
| SaqAI | TTAA | 1 cut(s) | 267 |
| SatI | GCNGC | 5 cut(s) | 24, 116, 174, 249, 488 |
| Sau3AI | GATC | 3 cut(s) | 79, 153, 454 |
| SchI | GAGTC | 2 cut(s) | 333, 472 |
| ScrFI | CCNGG | 1 cut(s) | 221 |
| SduI | GDGCHC | 1 cut(s) | 437 |
| SfaNI | GCATC | 3 cut(s) | 10, 19, 502 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 405 |
| Sse9I | AATT | 2 cut(s) | 41, 146 |
| SsiI | CCGC | 9 cut(s) | 23, 26, 73, 118, 278, 356, 410, 485, 488 |
| SspMI | CTAG | 2 cut(s) | 95, 177 |
| StyD4I | CCNGG | 1 cut(s) | 219 |
| TaaI | ACNGT | 2 cut(s) | 256, 505 |
| TaiI | ACGT | 2 cut(s) | 241, 266 |
| TasI | AATT | 2 cut(s) | 41, 146 |
| TauI | GCSGC | 2 cut(s) | 26, 490 |
| Tru1I | TTAA | 1 cut(s) | 267 |
| Tru9I | TTAA | 1 cut(s) | 267 |
| TseI | GCWGC | 3 cut(s) | 115, 173, 248 |
| XapI | RAATTY | 1 cut(s) | 146 |
| XspI | CTAG | 2 cut(s) | 95, 177 |