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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 553 |
| AccB1I | GGYRCC | 2 cut(s) | 416, 509 |
| AccBSI | CCGCTC | 3 cut(s) | 16, 187, 250 |
| AccII | CGCG | 6 cut(s) | 162, 236, 371, 595, 597, 661 |
| AclWI | GGATC | 1 cut(s) | 77 |
| AcoI | YGGCCR | 4 cut(s) | 129, 177, 372, 459 |
| AcuI | CTGAAG | 3 cut(s) | 338, 375, 726 |
| AcyI | GRCGYC | 3 cut(s) | 156, 417, 510 |
| AfaI | GTAC | 1 cut(s) | 469 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 186, 303, 348, 349, 506, 551, 586 |
| AflIII | ACRYGT | 1 cut(s) | 208 |
| AgsI | TTSAA | 2 cut(s) | 119, 394 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 648 |
| AjnI | CCWGG | 4 cut(s) | 192, 302, 333, 606 |
| AleI | CACNNNNGTG | 1 cut(s) | 305 |
| AluBI | AGCT | 3 cut(s) | 108, 169, 316 |
| AluI | AGCT | 3 cut(s) | 108, 169, 316 |
| Alw26I | GTCTC | 2 cut(s) | 217, 635 |
| AlwI | GGATC | 1 cut(s) | 77 |
| Ama87I | CYCGRG | 2 cut(s) | 73, 621 |
| AoxI | GGCC | 7 cut(s) | 58, 76, 129, 177, 331, 372, 459 |
| ApaI | GGGCCC | 1 cut(s) | 80 |
| ApeKI | GCWGC | 5 cut(s) | 238, 241, 286, 365, 386 |
| AspLEI | GCGC | 9 cut(s) | 238, 419, 454, 512, 539, 597, 599, 616, 661 |
| AspS9I | GGNCC | 5 cut(s) | 76, 77, 190, 555, 666 |
| AsuC2I | CCSGG | 2 cut(s) | 622, 623 |
| AsuHPI | GGTGA | 2 cut(s) | 23, 319 |
| AvaI | CYCGRG | 2 cut(s) | 73, 621 |
| AvaII | GGWCC | 3 cut(s) | 190, 555, 666 |
| AxyI | CCTNAGG | 1 cut(s) | 347 |
| BaeGI | GKGCMC | 1 cut(s) | 80 |
| BalI | TGGCCA | 2 cut(s) | 131, 179 |
| BanI | GGYRCC | 2 cut(s) | 416, 509 |
| BanII | GRGCYC | 1 cut(s) | 80 |
| BbvI | GCAGC | 5 cut(s) | 225, 228, 298, 352, 398 |
| BccI | CCATC | 3 cut(s) | 2, 188, 428 |
| BciT130I | CCWGG | 4 cut(s) | 194, 304, 335, 608 |
| BcnI | CCSGG | 2 cut(s) | 622, 623 |
| BcoDI | GTCTC | 2 cut(s) | 217, 635 |
| BfaI | CTAG | 2 cut(s) | 47, 62 |
| BfmI | CTRYAG | 2 cut(s) | 103, 242 |
| BfoI | RGCGCY | 2 cut(s) | 420, 513 |
| Bme1390I | CCNGG | 6 cut(s) | 194, 304, 335, 608, 622, 623 |
| Bme18I | GGWCC | 3 cut(s) | 190, 555, 666 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 648 |
| BmeT110I | CYCGRG | 2 cut(s) | 73, 621 |
| BmgT120I | GGNCC | 5 cut(s) | 76, 77, 190, 555, 666 |
| BmiI | GGNNCC | 7 cut(s) | 78, 191, 418, 511, 556, 557, 667 |
| BmrFI | CCNGG | 6 cut(s) | 194, 304, 335, 608, 622, 623 |
| BmsI | GCATC | 3 cut(s) | 352, 439, 706 |
| BpmI | CTGGAG | 1 cut(s) | 215 |
| Bpu10I | CCTNAGC | 2 cut(s) | 261, 517 |
| BpuMI | CCSGG | 2 cut(s) | 622, 623 |
| BsaHI | GRCGYC | 3 cut(s) | 156, 417, 510 |
| BsaI | GGTCTC | 1 cut(s) | 635 |
| BsaJI | CCNNGG | 6 cut(s) | 132, 160, 303, 369, 621, 720 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 186, 303, 348, 349, 506, 551, 586 |
| Bse118I | RCCGGY | 2 cut(s) | 457, 512 |
| Bse21I | CCTNAGG | 1 cut(s) | 347 |
| BseBI | CCWGG | 4 cut(s) | 194, 304, 335, 608 |
| BseDI | CCNNGG | 6 cut(s) | 132, 160, 303, 369, 621, 720 |
| BseGI | GGATG | 3 cut(s) | 235, 367, 541 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 186, 303, 348, 349, 506, 551, 586 |
| BseMII | CTCAG | 2 cut(s) | 338, 531 |
| BsePI | GCGCGC | 1 cut(s) | 595 |
| BseSI | GKGCMC | 1 cut(s) | 80 |
| BseX3I | CGGCCG | 1 cut(s) | 372 |
| BseXI | GCAGC | 5 cut(s) | 225, 228, 298, 352, 398 |
| BseYI | CCCAGC | 2 cut(s) | 499, 558 |
| BsgI | GTGCAG | 1 cut(s) | 305 |
| Bsh1236I | CGCG | 6 cut(s) | 162, 236, 371, 595, 597, 661 |
| Bsh1285I | CGRYCG | 2 cut(s) | 375, 690 |
| BshFI | GGCC | 7 cut(s) | 60, 78, 131, 179, 333, 374, 461 |
| BshNI | GGYRCC | 2 cut(s) | 416, 509 |
| BsiEI | CGRYCG | 2 cut(s) | 375, 690 |
| BsiHKCI | CYCGRG | 2 cut(s) | 73, 621 |
| BsiSI | CCGG | 4 cut(s) | 458, 476, 513, 622 |
| BslFI | GGGAC | 2 cut(s) | 203, 541 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 186, 303, 348, 349, 506, 551, 586 |
| BsmAI | GTCTC | 2 cut(s) | 217, 635 |
| BsmFI | GGGAC | 2 cut(s) | 203, 541 |
| BsmI | GAATGC | 1 cut(s) | 389 |
| BsnI | GGCC | 7 cut(s) | 60, 78, 131, 179, 333, 374, 461 |
| Bso31I | GGTCTC | 1 cut(s) | 635 |
| BsoBI | CYCGRG | 2 cut(s) | 73, 621 |
| Bsp120I | GGGCCC | 1 cut(s) | 76 |
| Bsp1286I | GDGCHC | 1 cut(s) | 80 |
| Bsp143I | GATC | 3 cut(s) | 69, 670, 687 |
| BspANI | GGCC | 7 cut(s) | 60, 78, 131, 179, 333, 374, 461 |
| BspCNI | CTCAG | 2 cut(s) | 339, 530 |
| BspFNI | CGCG | 6 cut(s) | 162, 236, 371, 595, 597, 661 |
| BspLI | GGNNCC | 7 cut(s) | 78, 191, 418, 511, 556, 557, 667 |
| BspMAI | CTGCAG | 1 cut(s) | 246 |
| BspPI | GGATC | 1 cut(s) | 77 |
| BspT107I | GGYRCC | 2 cut(s) | 416, 509 |
| BspTNI | GGTCTC | 1 cut(s) | 635 |
| BsrBI | CCGCTC | 3 cut(s) | 16, 187, 250 |
| BsrFI | RCCGGY | 2 cut(s) | 457, 512 |
| BssAI | RCCGGY | 2 cut(s) | 457, 512 |
| BssECI | CCNNGG | 6 cut(s) | 132, 160, 303, 369, 621, 720 |
| BssHII | GCGCGC | 1 cut(s) | 595 |
| BssMI | GATC | 3 cut(s) | 69, 670, 687 |
| BssNI | GRCGYC | 3 cut(s) | 156, 417, 510 |
| BssT1I | CCWWGG | 1 cut(s) | 132 |
| Bst2UI | CCWGG | 4 cut(s) | 194, 304, 335, 608 |
| Bst6I | CTCTTC | 1 cut(s) | 32 |
| BstACI | GRCGYC | 3 cut(s) | 156, 417, 510 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 716 |
| BstC8I | GCNNGC | 7 cut(s) | 160, 343, 459, 495, 514, 597, 702 |
| BstDEI | CTNAG | 3 cut(s) | 261, 347, 517 |
| BstDSI | CCRYGG | 2 cut(s) | 160, 369 |
| BstF5I | GGATG | 3 cut(s) | 235, 367, 541 |
| BstFNI | CGCG | 6 cut(s) | 162, 236, 371, 595, 597, 661 |
| BstH2I | RGCGCY | 2 cut(s) | 420, 513 |
| BstHHI | GCGC | 9 cut(s) | 238, 419, 454, 512, 539, 597, 599, 616, 661 |
| BstKTI | GATC | 3 cut(s) | 72, 673, 690 |
| BstMAI | GTCTC | 2 cut(s) | 217, 635 |
| BstMBI | GATC | 3 cut(s) | 69, 670, 687 |
| BstMCI | CGRYCG | 2 cut(s) | 375, 690 |
| BstNI | CCWGG | 4 cut(s) | 194, 304, 335, 608 |
| BstSCI | CCNGG | 6 cut(s) | 192, 302, 333, 606, 620, 621 |
| BstSFI | CTRYAG | 2 cut(s) | 103, 242 |
| BstSLI | GKGCMC | 1 cut(s) | 80 |
| BstUI | CGCG | 6 cut(s) | 162, 236, 371, 595, 597, 661 |
| BstV1I | GCAGC | 5 cut(s) | 225, 228, 298, 352, 398 |
| BstX2I | RGATCY | 1 cut(s) | 69 |
| BstYI | RGATCY | 1 cut(s) | 69 |
| BstZI | CGGCCG | 1 cut(s) | 372 |
| Bsu36I | CCTNAGG | 1 cut(s) | 347 |
| BsuRI | GGCC | 7 cut(s) | 60, 78, 131, 179, 333, 374, 461 |
| BtgI | CCRYGG | 2 cut(s) | 160, 369 |
| BtsCI | GGATG | 3 cut(s) | 235, 367, 541 |
| BtsI | GCAGTG | 1 cut(s) | 529 |
| BtsIMutI | CAGTG | 1 cut(s) | 529 |
| Cac8I | GCNNGC | 7 cut(s) | 160, 343, 459, 495, 514, 597, 702 |
| CciNI | GCGGCCGC | 1 cut(s) | 372 |
| CfoI | GCGC | 9 cut(s) | 238, 419, 454, 512, 539, 597, 599, 616, 661 |
| Cfr10I | RCCGGY | 2 cut(s) | 457, 512 |
| Cfr13I | GGNCC | 5 cut(s) | 76, 77, 190, 555, 666 |
| Cfr42I | CCGCGG | 2 cut(s) | 163, 372 |
| Cfr9I | CCCGGG | 1 cut(s) | 621 |
| CseI | GACGC | 2 cut(s) | 164, 426 |
| Csp6I | GTAC | 1 cut(s) | 468 |
| CviQI | GTAC | 1 cut(s) | 468 |
| DdeI | CTNAG | 3 cut(s) | 261, 347, 517 |
| DinI | GGCGCC | 2 cut(s) | 418, 511 |
| DpnI | GATC | 3 cut(s) | 71, 672, 689 |
| DpnII | GATC | 3 cut(s) | 69, 670, 687 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 553 |
| DriI | GACNNNNNGTC | 1 cut(s) | 648 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 553 |
| EaeI | YGGCCR | 4 cut(s) | 129, 177, 372, 459 |
| EagI | CGGCCG | 1 cut(s) | 372 |
| Eam1104I | CTCTTC | 1 cut(s) | 32 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 648 |
| EarI | CTCTTC | 1 cut(s) | 32 |
| EciI | GGCGGA | 4 cut(s) | 152, 286, 419, 641 |
| EclXI | CGGCCG | 1 cut(s) | 372 |
| Eco130I | CCWWGG | 1 cut(s) | 132 |
| Eco24I | GRGCYC | 1 cut(s) | 80 |
| Eco31I | GGTCTC | 1 cut(s) | 635 |
| Eco47I | GGWCC | 3 cut(s) | 190, 555, 666 |
| Eco52I | CGGCCG | 1 cut(s) | 372 |
| Eco57I | CTGAAG | 3 cut(s) | 338, 375, 726 |
| Eco81I | CCTNAGG | 1 cut(s) | 347 |
| Eco88I | CYCGRG | 2 cut(s) | 73, 621 |
| EcoO109I | RGGNCCY | 2 cut(s) | 190, 555 |
| EcoRII | CCWGG | 4 cut(s) | 192, 302, 333, 606 |
| EcoT14I | CCWWGG | 1 cut(s) | 132 |
| EcoT38I | GRGCYC | 1 cut(s) | 80 |
| EgeI | GGCGCC | 2 cut(s) | 418, 511 |
| EheI | GGCGCC | 2 cut(s) | 418, 511 |
| ErhI | CCWWGG | 1 cut(s) | 132 |
| FaiI | YATR | 1 cut(s) | 638 |
| FaqI | GGGAC | 2 cut(s) | 203, 541 |
| FauI | CCCGC | 9 cut(s) | 9, 58, 167, 180, 265, 282, 350, 480, 496 |
| FokI | GGATG | 3 cut(s) | 242, 374, 528 |
| FriOI | GRGCYC | 1 cut(s) | 80 |
| FspBI | CTAG | 2 cut(s) | 47, 62 |
| GlaI | GCGC | 9 cut(s) | 237, 418, 453, 511, 538, 596, 598, 615, 660 |
| GsaI | CCCAGC | 2 cut(s) | 503, 562 |
| GsuI | CTGGAG | 1 cut(s) | 215 |
| HaeII | RGCGCY | 2 cut(s) | 420, 513 |
| HaeIII | GGCC | 7 cut(s) | 60, 78, 131, 179, 333, 374, 461 |
| HapII | CCGG | 4 cut(s) | 458, 476, 513, 622 |
| HgaI | GACGC | 2 cut(s) | 164, 426 |
| HhaI | GCGC | 9 cut(s) | 238, 419, 454, 512, 539, 597, 599, 616, 661 |
| Hin1I | GRCGYC | 3 cut(s) | 156, 417, 510 |
| Hin6I | GCGC | 9 cut(s) | 236, 417, 452, 510, 537, 595, 597, 614, 659 |
| HinP1I | GCGC | 9 cut(s) | 236, 417, 452, 510, 537, 595, 597, 614, 659 |
| HinfI | GANTC | 4 cut(s) | 253, 293, 565, 603 |
| HpaII | CCGG | 4 cut(s) | 458, 476, 513, 622 |
| HphI | GGTGA | 2 cut(s) | 23, 319 |
| Hpy188I | TCNGA | 4 cut(s) | 546, 586, 654, 670 |
| Hpy99I | CGWCG | 2 cut(s) | 158, 550 |
| HpyAV | CCTTC | 3 cut(s) | 323, 350, 545 |
| HpyCH4IV | ACGT | 2 cut(s) | 174, 208 |
| HpyCH4V | TGCA | 3 cut(s) | 244, 286, 386 |
| HpyF3I | CTNAG | 3 cut(s) | 261, 347, 517 |
| HpySE526I | ACGT | 2 cut(s) | 174, 208 |
| Hsp92I | GRCGYC | 3 cut(s) | 156, 417, 510 |
| HspAI | GCGC | 9 cut(s) | 236, 417, 452, 510, 537, 595, 597, 614, 659 |
| KasI | GGCGCC | 2 cut(s) | 416, 509 |
| KflI | GGGWCCC | 1 cut(s) | 555 |
| KroI | GCCGGC | 2 cut(s) | 457, 512 |
| KroNI | GCCGGC | 2 cut(s) | 459, 514 |
| KspI | CCGCGG | 2 cut(s) | 163, 372 |
| Kzo9I | GATC | 3 cut(s) | 69, 670, 687 |
| LmnI | GCTCC | 3 cut(s) | 223, 247, 313 |
| Lsp1109I | GCAGC | 5 cut(s) | 225, 228, 298, 352, 398 |
| LweI | GCATC | 3 cut(s) | 352, 439, 706 |
| MaeI | CTAG | 2 cut(s) | 47, 62 |
| MaeII | ACGT | 2 cut(s) | 174, 208 |
| MaeIII | GTNAC | 3 cut(s) | 143, 307, 438 |
| MalI | GATC | 3 cut(s) | 71, 672, 689 |
| MbiI | CCGCTC | 3 cut(s) | 16, 187, 250 |
| MboI | GATC | 3 cut(s) | 69, 670, 687 |
| MboII | GAAGA | 2 cut(s) | 19, 725 |
| MflI | RGATCY | 1 cut(s) | 69 |
| MhlI | GDGCHC | 1 cut(s) | 80 |
| MlsI | TGGCCA | 2 cut(s) | 131, 179 |
| MluNI | TGGCCA | 2 cut(s) | 131, 179 |
| Mly113I | GGCGCC | 2 cut(s) | 417, 510 |
| MlyI | GAGTC | 2 cut(s) | 302, 559 |
| MmeI | TCCRAC | 3 cut(s) | 201, 569, 677 |
| MnlI | CCTC | 7 cut(s) | 35, 192, 342, 500, 580, 656, 715 |
| Mox20I | TGGCCA | 2 cut(s) | 131, 179 |
| MroNI | GCCGGC | 2 cut(s) | 457, 512 |
| MscI | TGGCCA | 2 cut(s) | 131, 179 |
| MseI | TTAA | 1 cut(s) | 411 |
| MslI | CAYNNNNRTG | 2 cut(s) | 281, 305 |
| Msp20I | TGGCCA | 2 cut(s) | 131, 179 |
| MspA1I | CMGCKG | 5 cut(s) | 162, 289, 371, 380, 503 |
| MspI | CCGG | 4 cut(s) | 458, 476, 513, 622 |
| MspR9I | CCNGG | 6 cut(s) | 194, 304, 335, 608, 622, 623 |
| Mva1269I | GAATGC | 1 cut(s) | 389 |
| MvaI | CCWGG | 4 cut(s) | 194, 304, 335, 608 |
| MvnI | CGCG | 6 cut(s) | 162, 236, 371, 595, 597, 661 |
| NaeI | GCCGGC | 2 cut(s) | 459, 514 |
| NarI | GGCGCC | 2 cut(s) | 417, 510 |
| NciI | CCSGG | 2 cut(s) | 622, 623 |
| NdeII | GATC | 3 cut(s) | 69, 670, 687 |
| NgoMIV | GCCGGC | 2 cut(s) | 457, 512 |
| NlaIV | GGNNCC | 7 cut(s) | 78, 191, 418, 511, 556, 557, 667 |
| NmeAIII | GCCGAG | 1 cut(s) | 89 |
| NmuCI | GTSAC | 3 cut(s) | 143, 307, 438 |
| NotI | GCGGCCGC | 1 cut(s) | 372 |
| OliI | CACNNNNGTG | 1 cut(s) | 305 |
| PauI | GCGCGC | 1 cut(s) | 595 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 180 |
| PctI | GAATGC | 1 cut(s) | 389 |
| PdiI | GCCGGC | 2 cut(s) | 459, 514 |
| PfeI | GAWTC | 2 cut(s) | 253, 603 |
| Ple19I | CGATCG | 1 cut(s) | 690 |
| PleI | GAGTC | 2 cut(s) | 301, 559 |
| PluTI | GGCGCC | 2 cut(s) | 420, 513 |
| PpsI | GAGTC | 2 cut(s) | 301, 559 |
| PpuMI | RGGWCCY | 2 cut(s) | 190, 555 |
| Psp5II | RGGWCCY | 2 cut(s) | 190, 555 |
| Psp6I | CCWGG | 4 cut(s) | 192, 302, 333, 606 |
| PspFI | CCCAGC | 2 cut(s) | 499, 558 |
| PspGI | CCWGG | 4 cut(s) | 192, 302, 333, 606 |
| PspN4I | GGNNCC | 7 cut(s) | 78, 191, 418, 511, 556, 557, 667 |
| PspOMI | GGGCCC | 1 cut(s) | 76 |
| PspPI | GGNCC | 5 cut(s) | 76, 77, 190, 555, 666 |
| PspPPI | RGGWCCY | 2 cut(s) | 190, 555 |
| PstI | CTGCAG | 1 cut(s) | 246 |
| PsuI | RGATCY | 1 cut(s) | 69 |
| PteI | GCGCGC | 1 cut(s) | 595 |
| PvuI | CGATCG | 1 cut(s) | 690 |
| RsaI | GTAC | 1 cut(s) | 469 |
| RsaNI | GTAC | 1 cut(s) | 468 |
| RseI | CAYNNNNRTG | 2 cut(s) | 281, 305 |
| SacII | CCGCGG | 2 cut(s) | 163, 372 |
| SaqAI | TTAA | 1 cut(s) | 411 |
| Sau3AI | GATC | 3 cut(s) | 69, 670, 687 |
| Sau96I | GGNCC | 5 cut(s) | 76, 77, 190, 555, 666 |
| SchI | GAGTC | 2 cut(s) | 302, 559 |
| ScrFI | CCNGG | 6 cut(s) | 194, 304, 335, 608, 622, 623 |
| SduI | GDGCHC | 1 cut(s) | 80 |
| SetI | ASST | 9 cut(s) | 36, 110, 171, 177, 195, 211, 318, 339, 591 |
| SfaNI | GCATC | 3 cut(s) | 352, 439, 706 |
| SfcI | CTRYAG | 2 cut(s) | 103, 242 |
| SfoI | GGCGCC | 2 cut(s) | 418, 511 |
| Sfr303I | CCGCGG | 2 cut(s) | 163, 372 |
| SgrBI | CCGCGG | 2 cut(s) | 163, 372 |
| SinI | GGWCC | 3 cut(s) | 190, 555, 666 |
| SmaI | CCCGGG | 1 cut(s) | 623 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 281, 305 |
| SspDI | GGCGCC | 2 cut(s) | 416, 509 |
| SspMI | CTAG | 2 cut(s) | 47, 62 |
| StyD4I | CCNGG | 6 cut(s) | 192, 302, 333, 606, 620, 621 |
| StyI | CCWWGG | 1 cut(s) | 132 |
| TaiI | ACGT | 2 cut(s) | 177, 211 |
| TaqI | TCGA | 3 cut(s) | 183, 423, 682 |
| TfiI | GAWTC | 2 cut(s) | 253, 603 |
| Tru1I | TTAA | 1 cut(s) | 411 |
| Tru9I | TTAA | 1 cut(s) | 411 |
| TscAI | CASTG | 1 cut(s) | 529 |
| TseFI | GTSAC | 3 cut(s) | 143, 307, 438 |
| TseI | GCWGC | 5 cut(s) | 238, 241, 286, 365, 386 |
| Tsp45I | GTSAC | 3 cut(s) | 143, 307, 438 |
| TspDTI | ATGAA | 1 cut(s) | 219 |
| TspGWI | ACGGA | 2 cut(s) | 326, 563 |
| TspMI | CCCGGG | 1 cut(s) | 621 |
| TspRI | CASTG | 1 cut(s) | 529 |
| VpaK11BI | GGWCC | 3 cut(s) | 190, 555, 666 |
| XmaI | CCCGGG | 1 cut(s) | 621 |
| XspI | CTAG | 2 cut(s) | 47, 62 |