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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 313 |
| AcoI | YGGCCR | 1 cut(s) | 375 |
| AcyI | GRCGYC | 2 cut(s) | 414, 423 |
| AfaI | GTAC | 2 cut(s) | 39, 56 |
| AfeI | AGCGCT | 1 cut(s) | 212 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 141, 267, 432 |
| AgsI | TTSAA | 1 cut(s) | 98 |
| AluBI | AGCT | 1 cut(s) | 152 |
| AluI | AGCT | 1 cut(s) | 152 |
| Alw26I | GTCTC | 1 cut(s) | 344 |
| Aor51HI | AGCGCT | 1 cut(s) | 212 |
| AoxI | GGCC | 1 cut(s) | 375 |
| ApeKI | GCWGC | 3 cut(s) | 102, 152, 243 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 245, 277 |
| AspA2I | CCTAGG | 2 cut(s) | 181, 302 |
| AspLEI | GCGC | 2 cut(s) | 213, 248 |
| AvrII | CCTAGG | 2 cut(s) | 181, 302 |
| BanII | GRGCYC | 2 cut(s) | 181, 302 |
| BauI | CACGAG | 2 cut(s) | 66, 174 |
| BbvI | GCAGC | 3 cut(s) | 89, 139, 230 |
| BccI | CCATC | 1 cut(s) | 230 |
| BceAI | ACGGC | 2 cut(s) | 256, 410 |
| BcoDI | GTCTC | 1 cut(s) | 344 |
| BfaI | CTAG | 4 cut(s) | 123, 182, 303, 419 |
| BfoI | RGCGCY | 1 cut(s) | 214 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 139 |
| BglII | AGATCT | 1 cut(s) | 125 |
| BisI | GCNGC | 6 cut(s) | 103, 106, 153, 244, 291, 314 |
| BlnI | CCTAGG | 2 cut(s) | 181, 302 |
| BlsI | GCNGC | 6 cut(s) | 104, 107, 154, 245, 292, 315 |
| BsaAI | YACGTR | 1 cut(s) | 41 |
| BsaHI | GRCGYC | 2 cut(s) | 414, 423 |
| BsaI | GGTCTC | 1 cut(s) | 344 |
| BsaJI | CCNNGG | 4 cut(s) | 181, 302, 334, 426 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 141, 171 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 141, 267, 432 |
| BseDI | CCNNGG | 4 cut(s) | 181, 302, 334, 426 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 141, 267, 432 |
| BseRI | GAGGAG | 1 cut(s) | 371 |
| BseXI | GCAGC | 3 cut(s) | 89, 139, 230 |
| Bsh1285I | CGRYCG | 3 cut(s) | 20, 159, 219 |
| BshFI | GGCC | 1 cut(s) | 377 |
| BsiEI | CGRYCG | 3 cut(s) | 20, 159, 219 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 141, 267, 432 |
| BsmAI | GTCTC | 1 cut(s) | 344 |
| BsnI | GGCC | 1 cut(s) | 377 |
| Bso31I | GGTCTC | 1 cut(s) | 344 |
| Bsp1286I | GDGCHC | 2 cut(s) | 181, 302 |
| Bsp143I | GATC | 2 cut(s) | 17, 125 |
| BspANI | GGCC | 1 cut(s) | 377 |
| BspTNI | GGTCTC | 1 cut(s) | 344 |
| BsrBI | CCGCTC | 1 cut(s) | 313 |
| BssECI | CCNNGG | 4 cut(s) | 181, 302, 334, 426 |
| BssMI | GATC | 2 cut(s) | 17, 125 |
| BssNI | GRCGYC | 2 cut(s) | 414, 423 |
| BssSI | CACGAG | 2 cut(s) | 66, 174 |
| BssT1I | CCWWGG | 2 cut(s) | 181, 302 |
| Bst2BI | CACGAG | 2 cut(s) | 66, 174 |
| BstACI | GRCGYC | 2 cut(s) | 414, 423 |
| BstBAI | YACGTR | 1 cut(s) | 41 |
| BstC8I | GCNNGC | 4 cut(s) | 47, 140, 393, 438 |
| BstDSI | CCRYGG | 1 cut(s) | 426 |
| BstH2I | RGCGCY | 1 cut(s) | 214 |
| BstHHI | GCGC | 2 cut(s) | 213, 248 |
| BstKTI | GATC | 2 cut(s) | 20, 128 |
| BstMAI | GTCTC | 1 cut(s) | 344 |
| BstMBI | GATC | 2 cut(s) | 17, 125 |
| BstMCI | CGRYCG | 3 cut(s) | 20, 159, 219 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 139, 158, 401, 422 |
| BstNSI | RCATGY | 1 cut(s) | 440 |
| BstSNI | TACGTA | 1 cut(s) | 41 |
| BstV1I | GCAGC | 3 cut(s) | 89, 139, 230 |
| BstX2I | RGATCY | 1 cut(s) | 125 |
| BstYI | RGATCY | 1 cut(s) | 125 |
| BsuRI | GGCC | 1 cut(s) | 377 |
| BtgI | CCRYGG | 1 cut(s) | 426 |
| Cac8I | GCNNGC | 4 cut(s) | 47, 140, 393, 438 |
| CfoI | GCGC | 2 cut(s) | 213, 248 |
| CseI | GACGC | 2 cut(s) | 422, 431 |
| Csp6I | GTAC | 2 cut(s) | 38, 55 |
| CviAII | CATG | 2 cut(s) | 275, 437 |
| CviJI | RGCY | 8 cut(s) | 49, 102, 152, 179, 243, 271, 300, 377 |
| CviKI_1 | RGCY | 8 cut(s) | 49, 102, 152, 179, 243, 271, 300, 377 |
| CviQI | GTAC | 2 cut(s) | 38, 55 |
| DpnI | GATC | 2 cut(s) | 19, 127 |
| DpnII | GATC | 2 cut(s) | 17, 125 |
| EaeI | YGGCCR | 1 cut(s) | 375 |
| EciI | GGCGGA | 1 cut(s) | 419 |
| Eco105I | TACGTA | 1 cut(s) | 41 |
| Eco130I | CCWWGG | 2 cut(s) | 181, 302 |
| Eco24I | GRGCYC | 2 cut(s) | 181, 302 |
| Eco31I | GGTCTC | 1 cut(s) | 344 |
| Eco47III | AGCGCT | 1 cut(s) | 212 |
| EcoT14I | CCWWGG | 2 cut(s) | 181, 302 |
| EcoT38I | GRGCYC | 2 cut(s) | 181, 302 |
| ErhI | CCWWGG | 2 cut(s) | 181, 302 |
| FaeI | CATG | 2 cut(s) | 278, 440 |
| FaiI | YATR | 5 cut(s) | 14, 238, 276, 401, 438 |
| FatI | CATG | 2 cut(s) | 274, 436 |
| FauI | CCCGC | 4 cut(s) | 38, 131, 135, 384 |
| Fnu4HI | GCNGC | 6 cut(s) | 103, 106, 153, 244, 291, 314 |
| FriOI | GRGCYC | 2 cut(s) | 181, 302 |
| Fsp4HI | GCNGC | 6 cut(s) | 103, 106, 153, 244, 291, 314 |
| FspBI | CTAG | 4 cut(s) | 123, 182, 303, 419 |
| GlaI | GCGC | 2 cut(s) | 212, 247 |
| GluI | GCNGC | 6 cut(s) | 103, 106, 153, 244, 291, 314 |
| HaeII | RGCGCY | 1 cut(s) | 214 |
| HaeIII | GGCC | 1 cut(s) | 377 |
| HgaI | GACGC | 2 cut(s) | 422, 431 |
| HhaI | GCGC | 2 cut(s) | 213, 248 |
| Hin1I | GRCGYC | 2 cut(s) | 414, 423 |
| Hin1II | CATG | 2 cut(s) | 278, 440 |
| Hin6I | GCGC | 2 cut(s) | 211, 246 |
| HinP1I | GCGC | 2 cut(s) | 211, 246 |
| HincII | GTYRAC | 1 cut(s) | 171 |
| HindII | GTYRAC | 1 cut(s) | 171 |
| HinfI | GANTC | 3 cut(s) | 64, 94, 186 |
| Hpy166II | GTNNAC | 1 cut(s) | 171 |
| Hpy188III | TCNNGA | 1 cut(s) | 68 |
| Hpy8I | GTNNAC | 1 cut(s) | 171 |
| Hpy99I | CGWCG | 1 cut(s) | 298 |
| HpyCH4IV | ACGT | 1 cut(s) | 40 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 139, 158, 401, 422 |
| HpySE526I | ACGT | 1 cut(s) | 40 |
| Hsp92I | GRCGYC | 2 cut(s) | 414, 423 |
| Hsp92II | CATG | 2 cut(s) | 278, 440 |
| HspAI | GCGC | 2 cut(s) | 211, 246 |
| Kzo9I | GATC | 2 cut(s) | 17, 125 |
| LmnI | GCTCC | 1 cut(s) | 149 |
| LpnPI | CCDG | 1 cut(s) | 148 |
| Lsp1109I | GCAGC | 3 cut(s) | 89, 139, 230 |
| MaeI | CTAG | 4 cut(s) | 123, 182, 303, 419 |
| MaeII | ACGT | 1 cut(s) | 40 |
| MaeIII | GTNAC | 1 cut(s) | 410 |
| MalI | GATC | 2 cut(s) | 19, 127 |
| MbiI | CCGCTC | 1 cut(s) | 313 |
| MboI | GATC | 2 cut(s) | 17, 125 |
| MboII | GAAGA | 2 cut(s) | 83, 120 |
| MflI | RGATCY | 1 cut(s) | 125 |
| MhlI | GDGCHC | 2 cut(s) | 181, 302 |
| MluCI | AATT | 2 cut(s) | 58, 204 |
| MlyI | GAGTC | 1 cut(s) | 58 |
| MmeI | TCCRAC | 1 cut(s) | 333 |
| MnlI | CCTC | 6 cut(s) | 84, 193, 319, 329, 349, 352 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 139, 158, 401, 422 |
| NdeII | GATC | 2 cut(s) | 17, 125 |
| NlaIII | CATG | 2 cut(s) | 278, 440 |
| NmeAIII | GCCGAG | 1 cut(s) | 142 |
| NmuCI | GTSAC | 1 cut(s) | 410 |
| NspI | RCATGY | 1 cut(s) | 440 |
| PaeI | GCATGC | 1 cut(s) | 440 |
| PfeI | GAWTC | 2 cut(s) | 94, 186 |
| PkrI | GCNGC | 6 cut(s) | 104, 107, 154, 245, 292, 315 |
| Ple19I | CGATCG | 1 cut(s) | 20 |
| PleI | GAGTC | 1 cut(s) | 58 |
| PpsI | GAGTC | 1 cut(s) | 58 |
| Ppu21I | YACGTR | 1 cut(s) | 41 |
| PsuI | RGATCY | 1 cut(s) | 125 |
| PvuI | CGATCG | 1 cut(s) | 20 |
| RsaI | GTAC | 2 cut(s) | 39, 56 |
| RsaNI | GTAC | 2 cut(s) | 38, 55 |
| SatI | GCNGC | 6 cut(s) | 103, 106, 153, 244, 291, 314 |
| Sau3AI | GATC | 2 cut(s) | 17, 125 |
| SchI | GAGTC | 1 cut(s) | 58 |
| SduI | GDGCHC | 2 cut(s) | 181, 302 |
| SetI | ASST | 4 cut(s) | 43, 154, 340, 374 |
| SnaBI | TACGTA | 1 cut(s) | 41 |
| SphI | GCATGC | 1 cut(s) | 440 |
| Sse9I | AATT | 2 cut(s) | 58, 204 |
| SspMI | CTAG | 4 cut(s) | 123, 182, 303, 419 |
| StyI | CCWWGG | 2 cut(s) | 181, 302 |
| TaiI | ACGT | 1 cut(s) | 43 |
| TaqI | TCGA | 1 cut(s) | 215 |
| TasI | AATT | 2 cut(s) | 58, 204 |
| TauI | GCSGC | 3 cut(s) | 108, 293, 316 |
| TfiI | GAWTC | 2 cut(s) | 94, 186 |
| TseFI | GTSAC | 1 cut(s) | 410 |
| TseI | GCWGC | 3 cut(s) | 102, 152, 243 |
| Tsp45I | GTSAC | 1 cut(s) | 410 |
| TspGWI | ACGGA | 1 cut(s) | 14 |
| XceI | RCATGY | 1 cut(s) | 440 |
| XmaJI | CCTAGG | 2 cut(s) | 181, 302 |
| XspI | CTAG | 4 cut(s) | 123, 182, 303, 419 |