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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 38 |
| AccBSI | CCGCTC | 1 cut(s) | 481 |
| AciI | CCGC | 9 cut(s) | 8, 70, 102, 173, 216, 325, 392, 419, 481 |
| AclWI | GGATC | 2 cut(s) | 25, 56 |
| AcoI | YGGCCR | 2 cut(s) | 174, 329 |
| AcuI | CTGAAG | 2 cut(s) | 473, 488 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 14, 247, 313 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 242, 274, 292, 324 |
| AluBI | AGCT | 5 cut(s) | 35, 129, 339, 409, 451 |
| AluI | AGCT | 5 cut(s) | 35, 129, 339, 409, 451 |
| Alw26I | GTCTC | 1 cut(s) | 107 |
| AlwI | GGATC | 2 cut(s) | 25, 56 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 409 |
| AoxI | GGCC | 3 cut(s) | 123, 174, 329 |
| ApeKI | GCWGC | 5 cut(s) | 32, 319, 322, 403, 406 |
| AspS9I | GGNCC | 1 cut(s) | 123 |
| AsuC2I | CCSGG | 1 cut(s) | 46 |
| AsuHPI | GGTGA | 1 cut(s) | 175 |
| BanI | GGYRCC | 1 cut(s) | 38 |
| BbvI | GCAGC | 5 cut(s) | 44, 306, 334, 415, 418 |
| BccI | CCATC | 3 cut(s) | 125, 290, 315 |
| BceAI | ACGGC | 2 cut(s) | 83, 316 |
| BclI | TGATCA | 1 cut(s) | 487 |
| BcnI | CCSGG | 1 cut(s) | 46 |
| BcoDI | GTCTC | 1 cut(s) | 107 |
| BfaI | CTAG | 2 cut(s) | 203, 441 |
| BfmI | CTRYAG | 1 cut(s) | 320 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 389 |
| BisI | GCNGC | 9 cut(s) | 8, 33, 71, 102, 174, 320, 323, 404, 407 |
| BlpI | GCTNAGC | 1 cut(s) | 340 |
| BlsI | GCNGC | 9 cut(s) | 9, 34, 72, 103, 175, 321, 324, 405, 408 |
| Bme1390I | CCNGG | 1 cut(s) | 46 |
| BmgT120I | GGNCC | 1 cut(s) | 123 |
| BmiI | GGNNCC | 3 cut(s) | 6, 40, 124 |
| BmrFI | CCNGG | 1 cut(s) | 46 |
| BmsI | GCATC | 3 cut(s) | 88, 418, 427 |
| BpmI | CTGGAG | 1 cut(s) | 23 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 340 |
| BpuEI | CTTGAG | 2 cut(s) | 363, 497 |
| BpuMI | CCSGG | 1 cut(s) | 46 |
| BsaBI | GATNNNNATC | 1 cut(s) | 461 |
| BsaI | GGTCTC | 1 cut(s) | 107 |
| BsaJI | CCNNGG | 3 cut(s) | 159, 168, 414 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 242, 272 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 14, 247, 313 |
| Bse118I | RCCGGY | 1 cut(s) | 498 |
| Bse1I | ACTGG | 4 cut(s) | 177, 297, 372, 393 |
| Bse8I | GATNNNNATC | 1 cut(s) | 461 |
| BseDI | CCNNGG | 3 cut(s) | 159, 168, 414 |
| BseGI | GGATG | 3 cut(s) | 100, 301, 307 |
| BseJI | GATNNNNATC | 1 cut(s) | 461 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 14, 247, 313 |
| BseMII | CTCAG | 3 cut(s) | 216, 354, 447 |
| BseNI | ACTGG | 4 cut(s) | 177, 297, 372, 393 |
| BseRI | GAGGAG | 1 cut(s) | 125 |
| BseXI | GCAGC | 5 cut(s) | 44, 306, 334, 415, 418 |
| BseYI | CCCAGC | 1 cut(s) | 277 |
| BsgI | GTGCAG | 1 cut(s) | 209 |
| BshFI | GGCC | 3 cut(s) | 125, 176, 331 |
| BshNI | GGYRCC | 1 cut(s) | 38 |
| BsiSI | CCGG | 2 cut(s) | 46, 499 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 14, 247, 313 |
| BsmAI | GTCTC | 1 cut(s) | 107 |
| BsmI | GAATGC | 1 cut(s) | 428 |
| BsnI | GGCC | 3 cut(s) | 125, 176, 331 |
| Bso31I | GGTCTC | 1 cut(s) | 107 |
| Bsp143I | GATC | 4 cut(s) | 17, 48, 199, 487 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 340 |
| Bsp19I | CCATGG | 1 cut(s) | 168 |
| BspACI | CCGC | 9 cut(s) | 8, 70, 102, 173, 216, 325, 392, 419, 481 |
| BspANI | GGCC | 3 cut(s) | 125, 176, 331 |
| BspCNI | CTCAG | 3 cut(s) | 217, 353, 446 |
| BspLI | GGNNCC | 3 cut(s) | 6, 40, 124 |
| BspMAI | CTGCAG | 1 cut(s) | 324 |
| BspPI | GGATC | 2 cut(s) | 25, 56 |
| BspT107I | GGYRCC | 1 cut(s) | 38 |
| BspTNI | GGTCTC | 1 cut(s) | 107 |
| BsrBI | CCGCTC | 1 cut(s) | 481 |
| BsrFI | RCCGGY | 1 cut(s) | 498 |
| BsrI | ACTGG | 4 cut(s) | 177, 297, 372, 393 |
| BssAI | RCCGGY | 1 cut(s) | 498 |
| BssECI | CCNNGG | 3 cut(s) | 159, 168, 414 |
| BssMI | GATC | 4 cut(s) | 17, 48, 199, 487 |
| BssT1I | CCWWGG | 3 cut(s) | 159, 168, 414 |
| Bst4CI | ACNGT | 2 cut(s) | 304, 316 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 38, 154 |
| BstC8I | GCNNGC | 2 cut(s) | 127, 150 |
| BstDEI | CTNAG | 3 cut(s) | 225, 340, 433 |
| BstDSI | CCRYGG | 1 cut(s) | 168 |
| BstEII | GGTNACC | 1 cut(s) | 163 |
| BstF5I | GGATG | 3 cut(s) | 100, 301, 307 |
| BstKTI | GATC | 4 cut(s) | 20, 51, 202, 490 |
| BstMAI | GTCTC | 1 cut(s) | 107 |
| BstMBI | GATC | 4 cut(s) | 17, 48, 199, 487 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 38, 154, 328, 389, 437 |
| BstNSI | RCATGY | 1 cut(s) | 152 |
| BstPI | GGTNACC | 1 cut(s) | 163 |
| BstSCI | CCNGG | 1 cut(s) | 44 |
| BstSFI | CTRYAG | 1 cut(s) | 320 |
| BstV1I | GCAGC | 5 cut(s) | 44, 306, 334, 415, 418 |
| BsuRI | GGCC | 3 cut(s) | 125, 176, 331 |
| BtgI | CCRYGG | 1 cut(s) | 168 |
| BtgZI | GCGATG | 1 cut(s) | 441 |
| BtsCI | GGATG | 3 cut(s) | 100, 301, 307 |
| BtsIMutI | CAGTG | 1 cut(s) | 184 |
| Cac8I | GCNNGC | 2 cut(s) | 127, 150 |
| CaiI | CAGNNNCTG | 1 cut(s) | 409 |
| Cfr10I | RCCGGY | 1 cut(s) | 498 |
| Cfr13I | GGNCC | 1 cut(s) | 123 |
| CviAII | CATG | 2 cut(s) | 149, 169 |
| DdeI | CTNAG | 3 cut(s) | 225, 340, 433 |
| DpnI | GATC | 4 cut(s) | 19, 50, 201, 489 |
| DpnII | GATC | 4 cut(s) | 17, 48, 199, 487 |
| EaeI | YGGCCR | 2 cut(s) | 174, 329 |
| EciI | GGCGGA | 2 cut(s) | 407, 434 |
| Eco130I | CCWWGG | 3 cut(s) | 159, 168, 414 |
| Eco31I | GGTCTC | 1 cut(s) | 107 |
| Eco57I | CTGAAG | 2 cut(s) | 473, 488 |
| Eco91I | GGTNACC | 1 cut(s) | 163 |
| EcoO65I | GGTNACC | 1 cut(s) | 163 |
| EcoT14I | CCWWGG | 3 cut(s) | 159, 168, 414 |
| ErhI | CCWWGG | 3 cut(s) | 159, 168, 414 |
| FaeI | CATG | 2 cut(s) | 152, 172 |
| FaiI | YATR | 3 cut(s) | 150, 170, 222 |
| FatI | CATG | 2 cut(s) | 148, 168 |
| FbaI | TGATCA | 1 cut(s) | 487 |
| Fnu4HI | GCNGC | 9 cut(s) | 8, 33, 71, 102, 174, 320, 323, 404, 407 |
| FokI | GGATG | 3 cut(s) | 107, 294, 308 |
| Fsp4HI | GCNGC | 9 cut(s) | 8, 33, 71, 102, 174, 320, 323, 404, 407 |
| FspBI | CTAG | 2 cut(s) | 203, 441 |
| GluI | GCNGC | 9 cut(s) | 8, 33, 71, 102, 174, 320, 323, 404, 407 |
| GsaI | CCCAGC | 1 cut(s) | 281 |
| GsuI | CTGGAG | 1 cut(s) | 23 |
| HaeIII | GGCC | 3 cut(s) | 125, 176, 331 |
| HapII | CCGG | 2 cut(s) | 46, 499 |
| Hin1II | CATG | 2 cut(s) | 152, 172 |
| HinfI | GANTC | 3 cut(s) | 206, 282, 374 |
| HpaII | CCGG | 2 cut(s) | 46, 499 |
| HphI | GGTGA | 1 cut(s) | 175 |
| Hpy166II | GTNNAC | 2 cut(s) | 213, 290 |
| Hpy188I | TCNGA | 2 cut(s) | 135, 436 |
| Hpy188III | TCNNGA | 2 cut(s) | 203, 232 |
| Hpy8I | GTNNAC | 2 cut(s) | 213, 290 |
| Hpy99I | CGWCG | 1 cut(s) | 110 |
| HpyCH4III | ACNGT | 2 cut(s) | 304, 316 |
| HpyCH4V | TGCA | 4 cut(s) | 32, 58, 190, 322 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 38, 154, 328, 389, 437 |
| HpyF3I | CTNAG | 3 cut(s) | 225, 340, 433 |
| Hsp92II | CATG | 2 cut(s) | 152, 172 |
| Ksp22I | TGATCA | 1 cut(s) | 487 |
| Kzo9I | GATC | 4 cut(s) | 17, 48, 199, 487 |
| LmnI | GCTCC | 3 cut(s) | 4, 27, 400 |
| Lsp1109I | GCAGC | 5 cut(s) | 44, 306, 334, 415, 418 |
| LweI | GCATC | 3 cut(s) | 88, 418, 427 |
| MaeI | CTAG | 2 cut(s) | 203, 441 |
| MaeIII | GTNAC | 3 cut(s) | 163, 350, 443 |
| MalI | GATC | 4 cut(s) | 19, 50, 201, 489 |
| MbiI | CCGCTC | 1 cut(s) | 481 |
| MboI | GATC | 4 cut(s) | 17, 48, 199, 487 |
| MboII | GAAGA | 2 cut(s) | 148, 466 |
| MlyI | GAGTC | 1 cut(s) | 200 |
| MmeI | TCCRAC | 1 cut(s) | 335 |
| MnlI | CCTC | 6 cut(s) | 82, 103, 138, 178, 267, 442 |
| MspA1I | CMGCKG | 4 cut(s) | 35, 129, 325, 409 |
| MspI | CCGG | 2 cut(s) | 46, 499 |
| MspR9I | CCNGG | 1 cut(s) | 46 |
| Mva1269I | GAATGC | 1 cut(s) | 428 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 38, 154, 328, 389, 437 |
| NciI | CCSGG | 1 cut(s) | 46 |
| NcoI | CCATGG | 1 cut(s) | 168 |
| NdeII | GATC | 4 cut(s) | 17, 48, 199, 487 |
| NlaIII | CATG | 2 cut(s) | 152, 172 |
| NlaIV | GGNNCC | 3 cut(s) | 6, 40, 124 |
| NmuCI | GTSAC | 3 cut(s) | 163, 350, 443 |
| NspI | RCATGY | 1 cut(s) | 152 |
| PaeI | GCATGC | 1 cut(s) | 152 |
| PctI | GAATGC | 1 cut(s) | 428 |
| PfeI | GAWTC | 2 cut(s) | 282, 374 |
| PkrI | GCNGC | 9 cut(s) | 9, 34, 72, 103, 175, 321, 324, 405, 408 |
| PleI | GAGTC | 1 cut(s) | 200 |
| PpsI | GAGTC | 1 cut(s) | 200 |
| PspEI | GGTNACC | 1 cut(s) | 163 |
| PspFI | CCCAGC | 1 cut(s) | 277 |
| PspN4I | GGNNCC | 3 cut(s) | 6, 40, 124 |
| PspPI | GGNCC | 1 cut(s) | 123 |
| PstI | CTGCAG | 1 cut(s) | 324 |
| PstNI | CAGNNNCTG | 1 cut(s) | 409 |
| PvuII | CAGCTG | 3 cut(s) | 35, 129, 409 |
| SatI | GCNGC | 9 cut(s) | 8, 33, 71, 102, 174, 320, 323, 404, 407 |
| Sau3AI | GATC | 4 cut(s) | 17, 48, 199, 487 |
| Sau96I | GGNCC | 1 cut(s) | 123 |
| SchI | GAGTC | 1 cut(s) | 200 |
| ScrFI | CCNGG | 1 cut(s) | 46 |
| SetI | ASST | 9 cut(s) | 37, 131, 165, 189, 267, 341, 411, 453, 477 |
| SfaNI | GCATC | 3 cut(s) | 88, 418, 427 |
| SfcI | CTRYAG | 1 cut(s) | 320 |
| SmlI | CTYRAG | 2 cut(s) | 378, 476 |
| SmoI | CTYRAG | 2 cut(s) | 378, 476 |
| SphI | GCATGC | 1 cut(s) | 152 |
| SsiI | CCGC | 9 cut(s) | 8, 70, 102, 173, 216, 325, 392, 419, 481 |
| SspMI | CTAG | 2 cut(s) | 203, 441 |
| StyD4I | CCNGG | 1 cut(s) | 44 |
| StyI | CCWWGG | 3 cut(s) | 159, 168, 414 |
| TaaI | ACNGT | 2 cut(s) | 304, 316 |
| TaqI | TCGA | 1 cut(s) | 465 |
| TaqII | GACCGA | 1 cut(s) | 251 |
| TauI | GCSGC | 4 cut(s) | 10, 73, 104, 176 |
| TfiI | GAWTC | 2 cut(s) | 282, 374 |
| TscAI | CASTG | 1 cut(s) | 184 |
| TseFI | GTSAC | 3 cut(s) | 163, 350, 443 |
| TseI | GCWGC | 5 cut(s) | 32, 319, 322, 403, 406 |
| Tsp45I | GTSAC | 3 cut(s) | 163, 350, 443 |
| TspRI | CASTG | 1 cut(s) | 184 |
| XbaI | TCTAGA | 1 cut(s) | 202 |
| XceI | RCATGY | 1 cut(s) | 152 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 166 |
| XspI | CTAG | 2 cut(s) | 203, 441 |