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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 210 |
| AccBSI | CCGCTC | 2 cut(s) | 55, 386 |
| AccII | CGCG | 1 cut(s) | 378 |
| AciI | CCGC | 9 cut(s) | 28, 55, 117, 143, 242, 256, 351, 376, 384 |
| AclI | AACGTT | 1 cut(s) | 297 |
| AcoI | YGGCCR | 1 cut(s) | 381 |
| AcuI | CTGAAG | 2 cut(s) | 8, 300 |
| AfaI | GTAC | 1 cut(s) | 106 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 28, 109, 166, 315 |
| AgsI | TTSAA | 1 cut(s) | 133 |
| AjnI | CCWGG | 2 cut(s) | 80, 314 |
| AluBI | AGCT | 2 cut(s) | 179, 340 |
| AluI | AGCT | 2 cut(s) | 179, 340 |
| Alw26I | GTCTC | 1 cut(s) | 289 |
| Ama87I | CYCGRG | 1 cut(s) | 288 |
| AoxI | GGCC | 3 cut(s) | 291, 317, 381 |
| ApeKI | GCWGC | 3 cut(s) | 170, 188, 305 |
| AspS9I | GGNCC | 5 cut(s) | 199, 236, 258, 291, 327 |
| AsuHPI | GGTGA | 1 cut(s) | 104 |
| AvaI | CYCGRG | 1 cut(s) | 288 |
| AvaII | GGWCC | 4 cut(s) | 199, 236, 258, 327 |
| BanII | GRGCYC | 1 cut(s) | 347 |
| BbvI | GCAGC | 3 cut(s) | 175, 182, 317 |
| BccI | CCATC | 2 cut(s) | 317, 338 |
| BceAI | ACGGC | 2 cut(s) | 23, 87 |
| BciT130I | CCWGG | 2 cut(s) | 82, 316 |
| BclI | TGATCA | 1 cut(s) | 229 |
| BcoDI | GTCTC | 1 cut(s) | 289 |
| BfuAI | ACCTGC | 1 cut(s) | 210 |
| BisI | GCNGC | 8 cut(s) | 117, 144, 171, 189, 306, 351, 376, 384 |
| BlpI | GCTNAGC | 1 cut(s) | 341 |
| BlsI | GCNGC | 8 cut(s) | 118, 145, 172, 190, 307, 352, 377, 385 |
| Bme1390I | CCNGG | 2 cut(s) | 82, 316 |
| Bme18I | GGWCC | 4 cut(s) | 199, 236, 258, 327 |
| BmeT110I | CYCGRG | 1 cut(s) | 288 |
| BmgT120I | GGNCC | 5 cut(s) | 199, 236, 258, 291, 327 |
| BmiI | GGNNCC | 3 cut(s) | 260, 328, 361 |
| BmrFI | CCNGG | 2 cut(s) | 82, 316 |
| BmrI | ACTGGG | 1 cut(s) | 268 |
| BmuI | ACTGGG | 1 cut(s) | 268 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 341 |
| BsaJI | CCNNGG | 1 cut(s) | 120 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 28, 109, 166, 315 |
| Bse1I | ACTGG | 1 cut(s) | 274 |
| BseBI | CCWGG | 2 cut(s) | 82, 316 |
| BseDI | CCNNGG | 1 cut(s) | 120 |
| BseGI | GGATG | 2 cut(s) | 18, 250 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 28, 109, 166, 315 |
| BseMII | CTCAG | 1 cut(s) | 332 |
| BseNI | ACTGG | 1 cut(s) | 274 |
| BseRI | GAGGAG | 1 cut(s) | 65 |
| BseXI | GCAGC | 3 cut(s) | 175, 182, 317 |
| BseYI | CCCAGC | 1 cut(s) | 85 |
| Bsh1236I | CGCG | 1 cut(s) | 378 |
| BshFI | GGCC | 3 cut(s) | 293, 319, 383 |
| BsiHKCI | CYCGRG | 1 cut(s) | 288 |
| BsiSI | CCGG | 1 cut(s) | 239 |
| BslFI | GGGAC | 1 cut(s) | 340 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 28, 109, 166, 315 |
| BsmAI | GTCTC | 1 cut(s) | 289 |
| BsmFI | GGGAC | 1 cut(s) | 340 |
| BsnI | GGCC | 3 cut(s) | 293, 319, 383 |
| BsoBI | CYCGRG | 1 cut(s) | 288 |
| Bsp1286I | GDGCHC | 1 cut(s) | 347 |
| Bsp143I | GATC | 1 cut(s) | 229 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 341 |
| Bsp19I | CCATGG | 1 cut(s) | 120 |
| BspACI | CCGC | 9 cut(s) | 28, 55, 117, 143, 242, 256, 351, 376, 384 |
| BspANI | GGCC | 3 cut(s) | 293, 319, 383 |
| BspCNI | CTCAG | 1 cut(s) | 333 |
| BspFNI | CGCG | 1 cut(s) | 378 |
| BspHI | TCATGA | 1 cut(s) | 333 |
| BspLI | GGNNCC | 3 cut(s) | 260, 328, 361 |
| BspMI | ACCTGC | 1 cut(s) | 210 |
| BspQI | GCTCTTC | 1 cut(s) | 92 |
| BsrBI | CCGCTC | 2 cut(s) | 55, 386 |
| BsrI | ACTGG | 1 cut(s) | 274 |
| BssECI | CCNNGG | 1 cut(s) | 120 |
| BssMI | GATC | 1 cut(s) | 229 |
| BssT1I | CCWWGG | 1 cut(s) | 120 |
| Bst2UI | CCWGG | 2 cut(s) | 82, 316 |
| Bst6I | CTCTTC | 1 cut(s) | 92 |
| BstC8I | GCNNGC | 1 cut(s) | 156 |
| BstDEI | CTNAG | 1 cut(s) | 341 |
| BstDSI | CCRYGG | 1 cut(s) | 120 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 164, 313 |
| BstF5I | GGATG | 2 cut(s) | 18, 250 |
| BstFNI | CGCG | 1 cut(s) | 378 |
| BstKTI | GATC | 1 cut(s) | 232 |
| BstMAI | GTCTC | 1 cut(s) | 289 |
| BstMBI | GATC | 1 cut(s) | 229 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 176, 185 |
| BstNI | CCWGG | 2 cut(s) | 82, 316 |
| BstSCI | CCNGG | 2 cut(s) | 80, 314 |
| BstUI | CGCG | 1 cut(s) | 378 |
| BstV1I | GCAGC | 3 cut(s) | 175, 182, 317 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 301 |
| BsuRI | GGCC | 3 cut(s) | 293, 319, 383 |
| BtgI | CCRYGG | 1 cut(s) | 120 |
| BtsCI | GGATG | 2 cut(s) | 18, 250 |
| BveI | ACCTGC | 1 cut(s) | 210 |
| Cac8I | GCNNGC | 1 cut(s) | 156 |
| CciI | TCATGA | 1 cut(s) | 333 |
| Cfr13I | GGNCC | 5 cut(s) | 199, 236, 258, 291, 327 |
| Csp6I | GTAC | 1 cut(s) | 105 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 360 |
| CviAII | CATG | 3 cut(s) | 121, 233, 334 |
| CviQI | GTAC | 1 cut(s) | 105 |
| DdeI | CTNAG | 1 cut(s) | 341 |
| DpnI | GATC | 1 cut(s) | 231 |
| DpnII | GATC | 1 cut(s) | 229 |
| EaeI | YGGCCR | 1 cut(s) | 381 |
| Eam1104I | CTCTTC | 1 cut(s) | 92 |
| EarI | CTCTTC | 1 cut(s) | 92 |
| EciI | GGCGGA | 1 cut(s) | 257 |
| Eco130I | CCWWGG | 1 cut(s) | 120 |
| Eco24I | GRGCYC | 1 cut(s) | 347 |
| Eco47I | GGWCC | 4 cut(s) | 199, 236, 258, 327 |
| Eco57I | CTGAAG | 2 cut(s) | 8, 300 |
| Eco88I | CYCGRG | 1 cut(s) | 288 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 164, 313 |
| EcoRII | CCWGG | 2 cut(s) | 80, 314 |
| EcoT14I | CCWWGG | 1 cut(s) | 120 |
| EcoT38I | GRGCYC | 1 cut(s) | 347 |
| ErhI | CCWWGG | 1 cut(s) | 120 |
| FaeI | CATG | 3 cut(s) | 124, 236, 337 |
| FaiI | YATR | 6 cut(s) | 122, 148, 150, 234, 312, 335 |
| FaqI | GGGAC | 1 cut(s) | 340 |
| FatI | CATG | 3 cut(s) | 120, 232, 333 |
| FauI | CCCGC | 1 cut(s) | 21 |
| FbaI | TGATCA | 1 cut(s) | 229 |
| Fnu4HI | GCNGC | 8 cut(s) | 117, 144, 171, 189, 306, 351, 376, 384 |
| FokI | GGATG | 2 cut(s) | 5, 257 |
| FriOI | GRGCYC | 1 cut(s) | 347 |
| Fsp4HI | GCNGC | 8 cut(s) | 117, 144, 171, 189, 306, 351, 376, 384 |
| GluI | GCNGC | 8 cut(s) | 117, 144, 171, 189, 306, 351, 376, 384 |
| GsaI | CCCAGC | 1 cut(s) | 89 |
| HaeIII | GGCC | 3 cut(s) | 293, 319, 383 |
| HapII | CCGG | 1 cut(s) | 239 |
| Hin1II | CATG | 3 cut(s) | 124, 236, 337 |
| HincII | GTYRAC | 1 cut(s) | 16 |
| HindII | GTYRAC | 1 cut(s) | 16 |
| HinfI | GANTC | 2 cut(s) | 32, 125 |
| HpaII | CCGG | 1 cut(s) | 239 |
| HphI | GGTGA | 1 cut(s) | 104 |
| Hpy166II | GTNNAC | 1 cut(s) | 16 |
| Hpy188I | TCNGA | 2 cut(s) | 280, 364 |
| Hpy188III | TCNNGA | 2 cut(s) | 43, 334 |
| Hpy8I | GTNNAC | 1 cut(s) | 16 |
| HpyAV | CCTTC | 3 cut(s) | 32, 139, 209 |
| HpyCH4IV | ACGT | 1 cut(s) | 297 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 176, 185 |
| HpyF3I | CTNAG | 1 cut(s) | 341 |
| HpySE526I | ACGT | 1 cut(s) | 297 |
| Hsp92II | CATG | 3 cut(s) | 124, 236, 337 |
| Ksp22I | TGATCA | 1 cut(s) | 229 |
| Kzo9I | GATC | 1 cut(s) | 229 |
| LguI | GCTCTTC | 1 cut(s) | 92 |
| LmnI | GCTCC | 1 cut(s) | 52 |
| Lsp1109I | GCAGC | 3 cut(s) | 175, 182, 317 |
| MaeII | ACGT | 1 cut(s) | 297 |
| MalI | GATC | 1 cut(s) | 231 |
| MbiI | CCGCTC | 2 cut(s) | 55, 386 |
| MboI | GATC | 1 cut(s) | 229 |
| MboII | GAAGA | 3 cut(s) | 70, 109, 224 |
| MhlI | GDGCHC | 1 cut(s) | 347 |
| MluCI | AATT | 1 cut(s) | 193 |
| MlyI | GAGTC | 1 cut(s) | 41 |
| MmeI | TCCRAC | 2 cut(s) | 45, 387 |
| MnlI | CCTC | 6 cut(s) | 43, 61, 67, 83, 103, 160 |
| MspA1I | CMGCKG | 2 cut(s) | 28, 256 |
| MspI | CCGG | 1 cut(s) | 239 |
| MspR9I | CCNGG | 2 cut(s) | 82, 316 |
| MvaI | CCWGG | 2 cut(s) | 82, 316 |
| MvnI | CGCG | 1 cut(s) | 378 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 176, 185 |
| NcoI | CCATGG | 1 cut(s) | 120 |
| NdeII | GATC | 1 cut(s) | 229 |
| NlaIII | CATG | 3 cut(s) | 124, 236, 337 |
| NlaIV | GGNNCC | 3 cut(s) | 260, 328, 361 |
| PagI | TCATGA | 1 cut(s) | 333 |
| PciSI | GCTCTTC | 1 cut(s) | 92 |
| PfeI | GAWTC | 1 cut(s) | 125 |
| PkrI | GCNGC | 8 cut(s) | 118, 145, 172, 190, 307, 352, 377, 385 |
| PleI | GAGTC | 1 cut(s) | 40 |
| PpsI | GAGTC | 1 cut(s) | 40 |
| Psp1406I | AACGTT | 1 cut(s) | 297 |
| Psp6I | CCWGG | 2 cut(s) | 80, 314 |
| PspFI | CCCAGC | 1 cut(s) | 85 |
| PspGI | CCWGG | 2 cut(s) | 80, 314 |
| PspN4I | GGNNCC | 3 cut(s) | 260, 328, 361 |
| PspPI | GGNCC | 5 cut(s) | 199, 236, 258, 291, 327 |
| RsaI | GTAC | 1 cut(s) | 106 |
| RsaNI | GTAC | 1 cut(s) | 105 |
| SapI | GCTCTTC | 1 cut(s) | 92 |
| SatI | GCNGC | 8 cut(s) | 117, 144, 171, 189, 306, 351, 376, 384 |
| Sau3AI | GATC | 1 cut(s) | 229 |
| Sau96I | GGNCC | 5 cut(s) | 199, 236, 258, 291, 327 |
| SchI | GAGTC | 1 cut(s) | 41 |
| ScrFI | CCNGG | 2 cut(s) | 82, 316 |
| SduI | GDGCHC | 1 cut(s) | 347 |
| SetI | ASST | 9 cut(s) | 15, 78, 94, 114, 181, 204, 220, 300, 342 |
| SinI | GGWCC | 4 cut(s) | 199, 236, 258, 327 |
| Sse9I | AATT | 1 cut(s) | 193 |
| SsiI | CCGC | 9 cut(s) | 28, 55, 117, 143, 242, 256, 351, 376, 384 |
| StyD4I | CCNGG | 2 cut(s) | 80, 314 |
| StyI | CCWWGG | 1 cut(s) | 120 |
| TaiI | ACGT | 1 cut(s) | 300 |
| TasI | AATT | 1 cut(s) | 193 |
| TauI | GCSGC | 5 cut(s) | 119, 146, 353, 378, 386 |
| TfiI | GAWTC | 1 cut(s) | 125 |
| TseI | GCWGC | 3 cut(s) | 170, 188, 305 |
| TspDTI | ATGAA | 1 cut(s) | 350 |
| VpaK11BI | GGWCC | 4 cut(s) | 199, 236, 258, 327 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 164, 313 |