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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 12, 1839 |
| Acc36I | ACCTGC | 1 cut(s) | 540 |
| AccB1I | GGYRCC | 5 cut(s) | 523, 690, 1312, 1911, 2201 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 159, 588, 2211 |
| AccBSI | CCGCTC | 9 cut(s) | 1554, 1603, 1630, 1768, 1909, 1930, 2276, 2313, 2475 |
| AccI | GTMKAC | 1 cut(s) | 1667 |
| AccIII | TCCGGA | 1 cut(s) | 190 |
| AclWI | GGATC | 4 cut(s) | 532, 1996, 2301, 2314 |
| AcoI | YGGCCR | 3 cut(s) | 3, 2293, 2493 |
| AcsI | RAATTY | 2 cut(s) | 73, 551 |
| AcuI | CTGAAG | 5 cut(s) | 66, 410, 1400, 1991, 2529 |
| AcvI | CACGTG | 1 cut(s) | 2087 |
| AcyI | GRCGYC | 6 cut(s) | 9, 691, 1745, 1836, 2222, 2363 |
| AdeI | CACNNNGTG | 1 cut(s) | 984 |
| AfaI | GTAC | 8 cut(s) | 660, 683, 776, 818, 893, 1405, 1549, 2238 |
| AflIII | ACRYGT | 3 cut(s) | 585, 1013, 1953 |
| AgeI | ACCGGT | 1 cut(s) | 1294 |
| AgsI | TTSAA | 7 cut(s) | 872, 1063, 1693, 1894, 2108, 2116, 2303 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 769, 2439 |
| AhlI | ACTAGT | 1 cut(s) | 2267 |
| AjiI | CACGTC | 1 cut(s) | 1531 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 103, 135 |
| AluBI | AGCT | 9 cut(s) | 1355, 1541, 1774, 1828, 1942, 2075, 2096, 2174, 2255 |
| AluI | AGCT | 9 cut(s) | 1355, 1541, 1774, 1828, 1942, 2075, 2096, 2174, 2255 |
| Alw21I | GWGCWC | 4 cut(s) | 486, 1294, 1332, 1522 |
| Alw26I | GTCTC | 3 cut(s) | 977, 1019, 2426 |
| Alw44I | GTGCAC | 2 cut(s) | 482, 1328 |
| AlwI | GGATC | 4 cut(s) | 532, 1996, 2301, 2314 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1759 |
| Ama87I | CYCGRG | 5 cut(s) | 1436, 1479, 2314, 2412, 2451 |
| Aor13HI | TCCGGA | 1 cut(s) | 190 |
| ApaI | GGGCCC | 1 cut(s) | 1480 |
| ApaLI | GTGCAC | 2 cut(s) | 482, 1328 |
| ApoI | RAATTY | 2 cut(s) | 73, 551 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1414, 1446 |
| AsiGI | ACCGGT | 1 cut(s) | 1294 |
| AsuHPI | GGTGA | 8 cut(s) | 430, 719, 970, 1235, 1309, 1610, 1987, 2066 |
| AvaI | CYCGRG | 5 cut(s) | 1436, 1479, 2314, 2412, 2451 |
| AvaII | GGWCC | 4 cut(s) | 641, 1075, 1147, 1969 |
| AxyI | CCTNAGG | 1 cut(s) | 758 |
| BaeGI | GKGCMC | 4 cut(s) | 486, 1332, 1480, 2086 |
| BalI | TGGCCA | 1 cut(s) | 2295 |
| BamHI | GGATCC | 1 cut(s) | 2306 |
| BanI | GGYRCC | 5 cut(s) | 523, 690, 1312, 1911, 2201 |
| BanII | GRGCYC | 2 cut(s) | 1172, 1480 |
| BauI | CACGAG | 2 cut(s) | 485, 903 |
| BbrPI | CACGTG | 1 cut(s) | 2087 |
| Bbv12I | GWGCWC | 4 cut(s) | 486, 1294, 1332, 1522 |
| BbvCI | CCTCAGC | 2 cut(s) | 1775, 2076 |
| BccI | CCATC | 8 cut(s) | 430, 1066, 1856, 1910, 2213, 2251, 2414, 2487 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1850, 1884 |
| BciVI | GTATCC | 1 cut(s) | 298 |
| BcoDI | GTCTC | 3 cut(s) | 977, 1019, 2426 |
| BcuI | ACTAGT | 1 cut(s) | 2267 |
| BfaI | CTAG | 4 cut(s) | 131, 248, 2048, 2268 |
| BfmI | CTRYAG | 4 cut(s) | 533, 2091, 2189, 2486 |
| BfoI | RGCGCY | 8 cut(s) | 247, 694, 740, 1166, 1277, 1309, 2144, 2169 |
| BfuAI | ACCTGC | 1 cut(s) | 540 |
| BfuI | GTATCC | 1 cut(s) | 298 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 1160, 1532, 2030 |
| BlpI | GCTNAGC | 3 cut(s) | 1166, 1938, 2355 |
| Bme18I | GGWCC | 4 cut(s) | 641, 1075, 1147, 1969 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 769, 2439 |
| BmeT110I | CYCGRG | 5 cut(s) | 1436, 1479, 2314, 2412, 2451 |
| BmgBI | CACGTC | 1 cut(s) | 1531 |
| BmrI | ACTGGG | 3 cut(s) | 335, 1509, 2433 |
| BmsI | GCATC | 6 cut(s) | 567, 939, 1858, 1867, 2217, 2494 |
| BmuI | ACTGGG | 3 cut(s) | 335, 1509, 2433 |
| BoxI | GACNNNNGTC | 1 cut(s) | 969 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 437, 469, 1492, 1524 |
| BpmI | CTGGAG | 7 cut(s) | 375, 1121, 1419, 1521, 1781, 1937, 1964 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1775, 1881, 2076 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 1166, 1938, 2355 |
| Bsa29I | ATCGAT | 1 cut(s) | 2208 |
| BsaAI | YACGTR | 2 cut(s) | 685, 2087 |
| BsaHI | GRCGYC | 6 cut(s) | 9, 691, 1745, 1836, 2222, 2363 |
| BsaI | GGTCTC | 1 cut(s) | 2426 |
| BsaWI | WCCGGW | 2 cut(s) | 190, 1294 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 276, 306, 833, 863, 1094, 1124 |
| Bse118I | RCCGGY | 6 cut(s) | 384, 463, 1294, 2162, 2230, 2495 |
| Bse1I | ACTGG | 4 cut(s) | 341, 782, 1515, 2439 |
| Bse21I | CCTNAGG | 1 cut(s) | 758 |
| Bse3DI | GCAATG | 1 cut(s) | 795 |
| BseAI | TCCGGA | 1 cut(s) | 190 |
| BseCI | ATCGAT | 1 cut(s) | 2208 |
| BseGI | GGATG | 7 cut(s) | 369, 894, 1270, 1882, 2243, 2425, 2479 |
| BseMI | GCAATG | 1 cut(s) | 795 |
| BseMII | CTCAG | 8 cut(s) | 749, 1157, 1188, 1766, 1895, 2067, 2367, 2369 |
| BseNI | ACTGG | 4 cut(s) | 341, 782, 1515, 2439 |
| BsePI | GCGCGC | 1 cut(s) | 926 |
| BseRI | GAGGAG | 7 cut(s) | 254, 300, 458, 965, 1020, 1469, 1472 |
| BseSI | GKGCMC | 4 cut(s) | 486, 1332, 1480, 2086 |
| BseX3I | CGGCCG | 1 cut(s) | 2493 |
| BseYI | CCCAGC | 3 cut(s) | 1308, 1355, 2390 |
| Bsh1285I | CGRYCG | 4 cut(s) | 648, 1667, 1671, 2496 |
| BshNI | GGYRCC | 5 cut(s) | 523, 690, 1312, 1911, 2201 |
| BshTI | ACCGGT | 1 cut(s) | 1294 |
| BshVI | ATCGAT | 1 cut(s) | 2208 |
| BsiEI | CGRYCG | 4 cut(s) | 648, 1667, 1671, 2496 |
| BsiHKAI | GWGCWC | 4 cut(s) | 486, 1294, 1332, 1522 |
| BsiHKCI | CYCGRG | 5 cut(s) | 1436, 1479, 2314, 2412, 2451 |
| BslFI | GGGAC | 9 cut(s) | 176, 564, 776, 1619, 1817, 1942, 1982, 2368, 2427 |
| BsmAI | GTCTC | 3 cut(s) | 977, 1019, 2426 |
| BsmBI | CGTCTC | 1 cut(s) | 977 |
| BsmFI | GGGAC | 9 cut(s) | 176, 564, 776, 1619, 1817, 1942, 1982, 2368, 2427 |
| Bso31I | GGTCTC | 1 cut(s) | 2426 |
| BsoBI | CYCGRG | 5 cut(s) | 1436, 1479, 2314, 2412, 2451 |
| Bsp120I | GGGCCC | 1 cut(s) | 1476 |
| Bsp1286I | GDGCHC | 7 cut(s) | 486, 1172, 1294, 1332, 1480, 1522, 2086 |
| Bsp13I | TCCGGA | 1 cut(s) | 190 |
| Bsp1407I | TGTACA | 1 cut(s) | 2236 |
| Bsp143I | GATC | 5 cut(s) | 537, 747, 2001, 2037, 2306 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 1166, 1938, 2355 |
| BspCNI | CTCAG | 8 cut(s) | 750, 1158, 1187, 1767, 1894, 2068, 2368, 2368 |
| BspDI | ATCGAT | 1 cut(s) | 2208 |
| BspEI | TCCGGA | 1 cut(s) | 190 |
| BspMAI | CTGCAG | 3 cut(s) | 537, 2095, 2193 |
| BspMI | ACCTGC | 1 cut(s) | 540 |
| BspPI | GGATC | 4 cut(s) | 532, 1996, 2301, 2314 |
| BspT107I | GGYRCC | 5 cut(s) | 523, 690, 1312, 1911, 2201 |
| BspTNI | GGTCTC | 1 cut(s) | 2426 |
| BsrBI | CCGCTC | 9 cut(s) | 1554, 1603, 1630, 1768, 1909, 1930, 2276, 2313, 2475 |
| BsrDI | GCAATG | 1 cut(s) | 795 |
| BsrFI | RCCGGY | 6 cut(s) | 384, 463, 1294, 2162, 2230, 2495 |
| BsrGI | TGTACA | 1 cut(s) | 2236 |
| BsrI | ACTGG | 4 cut(s) | 341, 782, 1515, 2439 |
| BssAI | RCCGGY | 6 cut(s) | 384, 463, 1294, 2162, 2230, 2495 |
| BssHII | GCGCGC | 1 cut(s) | 926 |
| BssMI | GATC | 5 cut(s) | 537, 747, 2001, 2037, 2306 |
| BssNI | GRCGYC | 6 cut(s) | 9, 691, 1745, 1836, 2222, 2363 |
| BssSI | CACGAG | 2 cut(s) | 485, 903 |
| Bst2BI | CACGAG | 2 cut(s) | 485, 903 |
| Bst4CI | ACNGT | 8 cut(s) | 220, 649, 725, 1079, 1327, 1598, 2428, 2490 |
| Bst6I | CTCTTC | 2 cut(s) | 906, 1446 |
| BstACI | GRCGYC | 6 cut(s) | 9, 691, 1745, 1836, 2222, 2363 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2090 |
| BstAUI | TGTACA | 1 cut(s) | 2236 |
| BstBAI | YACGTR | 2 cut(s) | 685, 2087 |
| BstDEI | CTNAG | 9 cut(s) | 758, 1166, 1174, 1775, 1881, 1938, 2076, 2355, 2376 |
| BstDSI | CCRYGG | 3 cut(s) | 477, 648, 1277 |
| BstEII | GGTNACC | 2 cut(s) | 1468, 1975 |
| BstF5I | GGATG | 7 cut(s) | 369, 894, 1270, 1882, 2243, 2425, 2479 |
| BstH2I | RGCGCY | 8 cut(s) | 247, 694, 740, 1166, 1277, 1309, 2144, 2169 |
| BstKTI | GATC | 5 cut(s) | 540, 750, 2004, 2040, 2309 |
| BstMAI | GTCTC | 3 cut(s) | 977, 1019, 2426 |
| BstMBI | GATC | 5 cut(s) | 537, 747, 2001, 2037, 2306 |
| BstMCI | CGRYCG | 4 cut(s) | 648, 1667, 1671, 2496 |
| BstNSI | RCATGY | 3 cut(s) | 589, 1712, 1957 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 969 |
| BstPI | GGTNACC | 2 cut(s) | 1468, 1975 |
| BstSFI | CTRYAG | 4 cut(s) | 533, 2091, 2189, 2486 |
| BstSLI | GKGCMC | 4 cut(s) | 486, 1332, 1480, 2086 |
| BstX2I | RGATCY | 3 cut(s) | 537, 2001, 2306 |
| BstYI | RGATCY | 3 cut(s) | 537, 2001, 2306 |
| BstZI | CGGCCG | 1 cut(s) | 2493 |
| Bsu15I | ATCGAT | 1 cut(s) | 2208 |
| Bsu36I | CCTNAGG | 1 cut(s) | 758 |
| BsuI | GTATCC | 1 cut(s) | 298 |
| BsuTUI | ATCGAT | 1 cut(s) | 2208 |
| BtgI | CCRYGG | 3 cut(s) | 477, 648, 1277 |
| BtgZI | GCGATG | 4 cut(s) | 544, 1085, 1272, 1881 |
| BtrI | CACGTC | 1 cut(s) | 1531 |
| BtsCI | GGATG | 7 cut(s) | 369, 894, 1270, 1882, 2243, 2425, 2479 |
| BtsI | GCAGTG | 2 cut(s) | 34, 2280 |
| BtsIMutI | CAGTG | 4 cut(s) | 34, 1522, 1603, 2280 |
| BveI | ACCTGC | 1 cut(s) | 540 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1759 |
| Cfr10I | RCCGGY | 6 cut(s) | 384, 463, 1294, 2162, 2230, 2495 |
| Cfr42I | CCGCGG | 2 cut(s) | 480, 1280 |
| Cfr9I | CCCGGG | 2 cut(s) | 1479, 2412 |
| ClaI | ATCGAT | 1 cut(s) | 2208 |
| CseI | GACGC | 8 cut(s) | 171, 176, 1021, 1064, 1734, 2211, 2371, 2534 |
| Csp6I | GTAC | 8 cut(s) | 659, 682, 775, 817, 892, 1404, 1548, 2237 |
| CspAI | ACCGGT | 1 cut(s) | 1294 |
| CviAII | CATG | 7 cut(s) | 236, 586, 1198, 1709, 1727, 1954, 2297 |
| CviQI | GTAC | 8 cut(s) | 659, 682, 775, 817, 892, 1404, 1548, 2237 |
| DdeI | CTNAG | 9 cut(s) | 758, 1166, 1174, 1775, 1881, 1938, 2076, 2355, 2376 |
| DinI | GGCGCC | 1 cut(s) | 692 |
| DpnI | GATC | 5 cut(s) | 539, 749, 2003, 2039, 2308 |
| DpnII | GATC | 5 cut(s) | 537, 747, 2001, 2037, 2306 |
| DraIII | CACNNNGTG | 1 cut(s) | 984 |
| DriI | GACNNNNNGTC | 2 cut(s) | 769, 2439 |
| EaeI | YGGCCR | 3 cut(s) | 3, 2293, 2493 |
| EagI | CGGCCG | 1 cut(s) | 2493 |
| Eam1104I | CTCTTC | 2 cut(s) | 906, 1446 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 769, 2439 |
| EarI | CTCTTC | 2 cut(s) | 906, 1446 |
| EclXI | CGGCCG | 1 cut(s) | 2493 |
| Eco147I | AGGCCT | 1 cut(s) | 452 |
| Eco24I | GRGCYC | 2 cut(s) | 1172, 1480 |
| Eco31I | GGTCTC | 1 cut(s) | 2426 |
| Eco47I | GGWCC | 4 cut(s) | 641, 1075, 1147, 1969 |
| Eco52I | CGGCCG | 1 cut(s) | 2493 |
| Eco57I | CTGAAG | 5 cut(s) | 66, 410, 1400, 1991, 2529 |
| Eco72I | CACGTG | 1 cut(s) | 2087 |
| Eco81I | CCTNAGG | 1 cut(s) | 758 |
| Eco88I | CYCGRG | 5 cut(s) | 1436, 1479, 2314, 2412, 2451 |
| Eco91I | GGTNACC | 2 cut(s) | 1468, 1975 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1476 |
| EcoO65I | GGTNACC | 2 cut(s) | 1468, 1975 |
| EcoRI | GAATTC | 1 cut(s) | 551 |
| EcoT38I | GRGCYC | 2 cut(s) | 1172, 1480 |
| EgeI | GGCGCC | 1 cut(s) | 692 |
| EheI | GGCGCC | 1 cut(s) | 692 |
| Esp3I | CGTCTC | 1 cut(s) | 977 |
| FaeI | CATG | 7 cut(s) | 239, 589, 1201, 1712, 1730, 1957, 2300 |
| FaqI | GGGAC | 9 cut(s) | 176, 564, 776, 1619, 1817, 1942, 1982, 2368, 2427 |
| FatI | CATG | 7 cut(s) | 235, 585, 1197, 1708, 1726, 1953, 2296 |
| FblI | GTMKAC | 1 cut(s) | 1667 |
| FokI | GGATG | 7 cut(s) | 376, 881, 1277, 1889, 2230, 2432, 2466 |
| FriOI | GRGCYC | 2 cut(s) | 1172, 1480 |
| FspBI | CTAG | 4 cut(s) | 131, 248, 2048, 2268 |
| GsaI | CCCAGC | 3 cut(s) | 1312, 1359, 2394 |
| GsuI | CTGGAG | 7 cut(s) | 375, 1121, 1419, 1521, 1781, 1937, 1964 |
| HaeII | RGCGCY | 8 cut(s) | 247, 694, 740, 1166, 1277, 1309, 2144, 2169 |
| HgaI | GACGC | 8 cut(s) | 171, 176, 1021, 1064, 1734, 2211, 2371, 2534 |
| Hin1I | GRCGYC | 6 cut(s) | 9, 691, 1745, 1836, 2222, 2363 |
| Hin1II | CATG | 7 cut(s) | 239, 589, 1201, 1712, 1730, 1957, 2300 |
| HincII | GTYRAC | 6 cut(s) | 346, 382, 715, 1433, 1668, 1834 |
| HindII | GTYRAC | 6 cut(s) | 346, 382, 715, 1433, 1668, 1834 |
| HphI | GGTGA | 8 cut(s) | 430, 719, 970, 1235, 1309, 1610, 1987, 2066 |
| Hpy188I | TCNGA | 5 cut(s) | 46, 631, 1177, 2377, 2461 |
| Hpy188III | TCNNGA | 8 cut(s) | 122, 191, 361, 751, 898, 905, 1063, 1798 |
| HpyCH4III | ACNGT | 8 cut(s) | 220, 649, 725, 1079, 1327, 1598, 2428, 2490 |
| HpyCH4V | TGCA | 7 cut(s) | 484, 535, 795, 1330, 1382, 2093, 2191 |
| HpyF3I | CTNAG | 9 cut(s) | 758, 1166, 1174, 1775, 1881, 1938, 2076, 2355, 2376 |
| Hsp92I | GRCGYC | 6 cut(s) | 9, 691, 1745, 1836, 2222, 2363 |
| Hsp92II | CATG | 7 cut(s) | 239, 589, 1201, 1712, 1730, 1957, 2300 |
| KasI | GGCGCC | 1 cut(s) | 690 |
| Kpn2I | TCCGGA | 1 cut(s) | 190 |
| KroI | GCCGGC | 2 cut(s) | 463, 2162 |
| KroNI | GCCGGC | 2 cut(s) | 465, 2164 |
| KspI | CCGCGG | 2 cut(s) | 480, 1280 |
| Kzo9I | GATC | 5 cut(s) | 537, 747, 2001, 2037, 2306 |
| LweI | GCATC | 6 cut(s) | 567, 939, 1858, 1867, 2217, 2494 |
| MaeI | CTAG | 4 cut(s) | 131, 248, 2048, 2268 |
| MalI | GATC | 5 cut(s) | 539, 749, 2003, 2039, 2308 |
| MbiI | CCGCTC | 9 cut(s) | 1554, 1603, 1630, 1768, 1909, 1930, 2276, 2313, 2475 |
| MboI | GATC | 5 cut(s) | 537, 747, 2001, 2037, 2306 |
| MboII | GAAGA | 5 cut(s) | 923, 1463, 1504, 1793, 2002 |
| MfeI | CAATTG | 1 cut(s) | 1007 |
| MflI | RGATCY | 3 cut(s) | 537, 2001, 2306 |
| MhlI | GDGCHC | 7 cut(s) | 486, 1172, 1294, 1332, 1480, 1522, 2086 |
| MlsI | TGGCCA | 1 cut(s) | 2295 |
| MluCI | AATT | 7 cut(s) | 73, 551, 674, 855, 955, 989, 1007 |
| MluI | ACGCGT | 1 cut(s) | 1013 |
| MluNI | TGGCCA | 1 cut(s) | 2295 |
| Mly113I | GGCGCC | 1 cut(s) | 691 |
| MmeI | TCCRAC | 3 cut(s) | 654, 1341, 1699 |
| Mox20I | TGGCCA | 1 cut(s) | 2295 |
| MroI | TCCGGA | 1 cut(s) | 190 |
| MroNI | GCCGGC | 2 cut(s) | 463, 2162 |
| MscI | TGGCCA | 1 cut(s) | 2295 |
| MseI | TTAA | 1 cut(s) | 858 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1218 |
| Msp20I | TGGCCA | 1 cut(s) | 2295 |
| MunI | CAATTG | 1 cut(s) | 1007 |
| NaeI | GCCGGC | 2 cut(s) | 465, 2164 |
| NarI | GGCGCC | 1 cut(s) | 691 |
| NdeII | GATC | 5 cut(s) | 537, 747, 2001, 2037, 2306 |
| NgoMIV | GCCGGC | 2 cut(s) | 463, 2162 |
| NlaIII | CATG | 7 cut(s) | 239, 589, 1201, 1712, 1730, 1957, 2300 |
| NmeAIII | GCCGAG | 1 cut(s) | 1606 |
| NmuCI | GTSAC | 8 cut(s) | 114, 508, 725, 1052, 1223, 1297, 1345, 1975 |
| NspI | RCATGY | 3 cut(s) | 589, 1712, 1957 |
| PauI | GCGCGC | 1 cut(s) | 926 |
| PceI | AGGCCT | 1 cut(s) | 452 |
| PciI | ACATGT | 2 cut(s) | 585, 1953 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 92, 1331, 1902 |
| PdiI | GCCGGC | 2 cut(s) | 465, 2164 |
| PfeI | GAWTC | 6 cut(s) | 35, 949, 1410, 1562, 1638, 2108 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 159, 588, 2211 |
| PfoI | TCCNGGA | 1 cut(s) | 1098 |
| PinAI | ACCGGT | 1 cut(s) | 1294 |
| PluTI | GGCGCC | 1 cut(s) | 694 |
| PmaCI | CACGTG | 1 cut(s) | 2087 |
| PmlI | CACGTG | 1 cut(s) | 2087 |
| Ppu21I | YACGTR | 2 cut(s) | 685, 2087 |
| PscI | ACATGT | 2 cut(s) | 585, 1953 |
| PshAI | GACNNNNGTC | 1 cut(s) | 969 |
| PspCI | CACGTG | 1 cut(s) | 2087 |
| PspEI | GGTNACC | 2 cut(s) | 1468, 1975 |
| PspFI | CCCAGC | 3 cut(s) | 1308, 1355, 2390 |
| PspOMI | GGGCCC | 1 cut(s) | 1476 |
| PstI | CTGCAG | 3 cut(s) | 537, 2095, 2193 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1759 |
| PsuI | RGATCY | 3 cut(s) | 537, 2001, 2306 |
| PteI | GCGCGC | 1 cut(s) | 926 |
| PvuII | CAGCTG | 3 cut(s) | 1541, 1828, 2096 |
| RsaI | GTAC | 8 cut(s) | 660, 683, 776, 818, 893, 1405, 1549, 2238 |
| RsaNI | GTAC | 8 cut(s) | 659, 682, 775, 817, 892, 1404, 1548, 2237 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1218 |
| SacII | CCGCGG | 2 cut(s) | 480, 1280 |
| SalI | GTCGAC | 1 cut(s) | 1666 |
| SaqAI | TTAA | 1 cut(s) | 858 |
| Sau3AI | GATC | 5 cut(s) | 537, 747, 2001, 2037, 2306 |
| SduI | GDGCHC | 7 cut(s) | 486, 1172, 1294, 1332, 1480, 1522, 2086 |
| SfaNI | GCATC | 6 cut(s) | 567, 939, 1858, 1867, 2217, 2494 |
| SfcI | CTRYAG | 4 cut(s) | 533, 2091, 2189, 2486 |
| SfoI | GGCGCC | 1 cut(s) | 692 |
| Sfr303I | CCGCGG | 2 cut(s) | 480, 1280 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1294 |
| SgrBI | CCGCGG | 2 cut(s) | 480, 1280 |
| SinI | GGWCC | 4 cut(s) | 641, 1075, 1147, 1969 |
| SmaI | CCCGGG | 2 cut(s) | 1481, 2414 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1218 |
| SpeI | ACTAGT | 1 cut(s) | 2267 |
| Sse9I | AATT | 7 cut(s) | 73, 551, 674, 855, 955, 989, 1007 |
| SseBI | AGGCCT | 1 cut(s) | 452 |
| SspDI | GGCGCC | 1 cut(s) | 690 |
| SspI | AATATT | 1 cut(s) | 495 |
| SspMI | CTAG | 4 cut(s) | 131, 248, 2048, 2268 |
| StuI | AGGCCT | 1 cut(s) | 452 |
| TaaI | ACNGT | 8 cut(s) | 220, 649, 725, 1079, 1327, 1598, 2428, 2490 |
| TaqII | GACCGA | 2 cut(s) | 658, 1653 |
| TasI | AATT | 7 cut(s) | 73, 551, 674, 855, 955, 989, 1007 |
| TatI | WGTACW | 1 cut(s) | 2236 |
| TfiI | GAWTC | 6 cut(s) | 35, 949, 1410, 1562, 1638, 2108 |
| Tru1I | TTAA | 1 cut(s) | 858 |
| Tru9I | TTAA | 1 cut(s) | 858 |
| TscAI | CASTG | 4 cut(s) | 34, 1522, 1603, 2287 |
| TseFI | GTSAC | 8 cut(s) | 114, 508, 725, 1052, 1223, 1297, 1345, 1975 |
| Tsp45I | GTSAC | 8 cut(s) | 114, 508, 725, 1052, 1223, 1297, 1345, 1975 |
| TspGWI | ACGGA | 2 cut(s) | 959, 1352 |
| TspMI | CCCGGG | 2 cut(s) | 1479, 2412 |
| TspRI | CASTG | 4 cut(s) | 34, 1522, 1603, 2287 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 159, 588, 2211 |
| VneI | GTGCAC | 2 cut(s) | 482, 1328 |
| VpaK11BI | GGWCC | 4 cut(s) | 641, 1075, 1147, 1969 |
| XapI | RAATTY | 2 cut(s) | 73, 551 |
| XceI | RCATGY | 3 cut(s) | 589, 1712, 1957 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1214, 1357, 1756 |
| XmaI | CCCGGG | 2 cut(s) | 1479, 2412 |
| XmiI | GTMKAC | 1 cut(s) | 1667 |
| XspI | CTAG | 4 cut(s) | 131, 248, 2048, 2268 |
| ZraI | GACGTC | 2 cut(s) | 10, 1837 |