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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 12 |
| AccBSI | CCGCTC | 2 cut(s) | 266, 583 |
| AccII | CGCG | 1 cut(s) | 84 |
| AcoI | YGGCCR | 2 cut(s) | 203, 478 |
| AcsI | RAATTY | 1 cut(s) | 228 |
| AcuI | CTGAAG | 4 cut(s) | 411, 426, 489, 610 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 140, 569 |
| AgsI | TTSAA | 1 cut(s) | 614 |
| AjnI | CCWGG | 1 cut(s) | 19 |
| AluBI | AGCT | 5 cut(s) | 284, 305, 389, 461, 566 |
| AluI | AGCT | 5 cut(s) | 284, 305, 389, 461, 566 |
| Alw21I | GWGCWC | 1 cut(s) | 286 |
| Alw26I | GTCTC | 1 cut(s) | 81 |
| Ama87I | CYCGRG | 1 cut(s) | 255 |
| AoxI | GGCC | 5 cut(s) | 97, 203, 241, 319, 478 |
| ApeKI | GCWGC | 2 cut(s) | 251, 558 |
| ApoI | RAATTY | 1 cut(s) | 228 |
| AspS9I | GGNCC | 1 cut(s) | 97 |
| AvaI | CYCGRG | 1 cut(s) | 255 |
| BalI | TGGCCA | 2 cut(s) | 205, 480 |
| BanI | GGYRCC | 1 cut(s) | 12 |
| BanII | GRGCYC | 1 cut(s) | 286 |
| Bbv12I | GWGCWC | 1 cut(s) | 286 |
| BbvCI | CCTCAGC | 1 cut(s) | 194 |
| BbvI | GCAGC | 2 cut(s) | 263, 545 |
| BccI | CCATC | 2 cut(s) | 99, 467 |
| BciT130I | CCWGG | 1 cut(s) | 21 |
| BclI | TGATCA | 1 cut(s) | 425 |
| BcoDI | GTCTC | 1 cut(s) | 81 |
| BfaI | CTAG | 1 cut(s) | 177 |
| BfmI | CTRYAG | 1 cut(s) | 517 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 327 |
| BisI | GCNGC | 8 cut(s) | 7, 190, 252, 267, 342, 559, 598, 625 |
| BlsI | GCNGC | 8 cut(s) | 8, 191, 253, 268, 343, 560, 599, 626 |
| Bme1390I | CCNGG | 1 cut(s) | 21 |
| BmeT110I | CYCGRG | 1 cut(s) | 255 |
| BmgT120I | GGNCC | 1 cut(s) | 97 |
| BmiI | GGNNCC | 2 cut(s) | 14, 98 |
| BmrFI | CCNGG | 1 cut(s) | 21 |
| BmsI | GCATC | 5 cut(s) | 62, 302, 356, 365, 596 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 110, 142 |
| BpmI | CTGGAG | 1 cut(s) | 588 |
| Bpu10I | CCTNAGC | 2 cut(s) | 194, 316 |
| BpuEI | CTTGAG | 1 cut(s) | 435 |
| BsaBI | GATNNNNATC | 1 cut(s) | 399 |
| BsaI | GGTCTC | 1 cut(s) | 81 |
| BsaJI | CCNNGG | 6 cut(s) | 19, 256, 352, 370, 481, 532 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 140, 569 |
| Bse118I | RCCGGY | 1 cut(s) | 239 |
| Bse1I | ACTGG | 2 cut(s) | 186, 331 |
| Bse3DI | GCAATG | 1 cut(s) | 27 |
| Bse8I | GATNNNNATC | 1 cut(s) | 399 |
| BseBI | CCWGG | 1 cut(s) | 21 |
| BseDI | CCNNGG | 6 cut(s) | 19, 256, 352, 370, 481, 532 |
| BseGI | GGATG | 4 cut(s) | 74, 317, 380, 611 |
| BseJI | GATNNNNATC | 1 cut(s) | 399 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 140, 569 |
| BseMI | GCAATG | 1 cut(s) | 27 |
| BseMII | CTCAG | 2 cut(s) | 208, 330 |
| BseNI | ACTGG | 2 cut(s) | 186, 331 |
| BseRI | GAGGAG | 2 cut(s) | 78, 294 |
| BseXI | GCAGC | 2 cut(s) | 263, 545 |
| BseYI | CCCAGC | 1 cut(s) | 562 |
| BsgI | GTGCAG | 1 cut(s) | 183 |
| Bsh1236I | CGCG | 1 cut(s) | 84 |
| BshFI | GGCC | 5 cut(s) | 99, 205, 243, 321, 480 |
| BshNI | GGYRCC | 1 cut(s) | 12 |
| BsiHKAI | GWGCWC | 1 cut(s) | 286 |
| BsiHKCI | CYCGRG | 1 cut(s) | 255 |
| BsiSI | CCGG | 1 cut(s) | 240 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 140, 569 |
| BsmAI | GTCTC | 1 cut(s) | 81 |
| BsnI | GGCC | 5 cut(s) | 99, 205, 243, 321, 480 |
| Bso31I | GGTCTC | 1 cut(s) | 81 |
| BsoBI | CYCGRG | 1 cut(s) | 255 |
| Bsp1286I | GDGCHC | 1 cut(s) | 286 |
| Bsp143I | GATC | 2 cut(s) | 173, 425 |
| BspANI | GGCC | 5 cut(s) | 99, 205, 243, 321, 480 |
| BspCNI | CTCAG | 2 cut(s) | 207, 329 |
| BspFNI | CGCG | 1 cut(s) | 84 |
| BspLI | GGNNCC | 2 cut(s) | 14, 98 |
| BspT107I | GGYRCC | 1 cut(s) | 12 |
| BspTNI | GGTCTC | 1 cut(s) | 81 |
| BsrBI | CCGCTC | 2 cut(s) | 266, 583 |
| BsrDI | GCAATG | 1 cut(s) | 27 |
| BsrFI | RCCGGY | 1 cut(s) | 239 |
| BsrI | ACTGG | 2 cut(s) | 186, 331 |
| BssAI | RCCGGY | 1 cut(s) | 239 |
| BssECI | CCNNGG | 6 cut(s) | 19, 256, 352, 370, 481, 532 |
| BssMI | GATC | 2 cut(s) | 173, 425 |
| BssT1I | CCWWGG | 2 cut(s) | 352, 481 |
| Bst2UI | CCWGG | 1 cut(s) | 21 |
| Bst4CI | ACNGT | 1 cut(s) | 143 |
| BstC8I | GCNNGC | 4 cut(s) | 124, 241, 307, 380 |
| BstDEI | CTNAG | 2 cut(s) | 194, 316 |
| BstF5I | GGATG | 4 cut(s) | 74, 317, 380, 611 |
| BstFNI | CGCG | 1 cut(s) | 84 |
| BstKTI | GATC | 2 cut(s) | 176, 428 |
| BstMAI | GTCTC | 1 cut(s) | 81 |
| BstMBI | GATC | 2 cut(s) | 173, 425 |
| BstNI | CCWGG | 1 cut(s) | 21 |
| BstNSI | RCATGY | 1 cut(s) | 126 |
| BstSCI | CCNGG | 1 cut(s) | 19 |
| BstSFI | CTRYAG | 1 cut(s) | 517 |
| BstUI | CGCG | 1 cut(s) | 84 |
| BstV1I | GCAGC | 2 cut(s) | 263, 545 |
| BsuRI | GGCC | 5 cut(s) | 99, 205, 243, 321, 480 |
| BtsCI | GGATG | 4 cut(s) | 74, 317, 380, 611 |
| Cac8I | GCNNGC | 4 cut(s) | 124, 241, 307, 380 |
| Cfr10I | RCCGGY | 1 cut(s) | 239 |
| Cfr13I | GGNCC | 1 cut(s) | 97 |
| CseI | GACGC | 1 cut(s) | 90 |
| CviAII | CATG | 2 cut(s) | 123, 225 |
| DdeI | CTNAG | 2 cut(s) | 194, 316 |
| DpnI | GATC | 2 cut(s) | 175, 427 |
| DpnII | GATC | 2 cut(s) | 173, 425 |
| EaeI | YGGCCR | 2 cut(s) | 203, 478 |
| EciI | GGCGGA | 5 cut(s) | 324, 345, 372, 518, 588 |
| Ecl136II | GAGCTC | 1 cut(s) | 284 |
| Eco130I | CCWWGG | 2 cut(s) | 352, 481 |
| Eco24I | GRGCYC | 1 cut(s) | 286 |
| Eco31I | GGTCTC | 1 cut(s) | 81 |
| Eco53kI | GAGCTC | 1 cut(s) | 284 |
| Eco57I | CTGAAG | 4 cut(s) | 411, 426, 489, 610 |
| Eco88I | CYCGRG | 1 cut(s) | 255 |
| EcoICRI | GAGCTC | 1 cut(s) | 284 |
| EcoO109I | RGGNCCY | 1 cut(s) | 97 |
| EcoRI | GAATTC | 1 cut(s) | 228 |
| EcoRII | CCWGG | 1 cut(s) | 19 |
| EcoT14I | CCWWGG | 2 cut(s) | 352, 481 |
| EcoT38I | GRGCYC | 1 cut(s) | 286 |
| ErhI | CCWWGG | 2 cut(s) | 352, 481 |
| FaeI | CATG | 2 cut(s) | 126, 228 |
| FaiI | YATR | 3 cut(s) | 124, 226, 453 |
| FatI | CATG | 2 cut(s) | 122, 224 |
| FauI | CCCGC | 1 cut(s) | 142 |
| FbaI | TGATCA | 1 cut(s) | 425 |
| Fnu4HI | GCNGC | 8 cut(s) | 7, 190, 252, 267, 342, 559, 598, 625 |
| FokI | GGATG | 4 cut(s) | 81, 324, 387, 618 |
| FriOI | GRGCYC | 1 cut(s) | 286 |
| Fsp4HI | GCNGC | 8 cut(s) | 7, 190, 252, 267, 342, 559, 598, 625 |
| FspBI | CTAG | 1 cut(s) | 177 |
| GluI | GCNGC | 8 cut(s) | 7, 190, 252, 267, 342, 559, 598, 625 |
| GsaI | CCCAGC | 1 cut(s) | 566 |
| GsuI | CTGGAG | 1 cut(s) | 588 |
| HaeIII | GGCC | 5 cut(s) | 99, 205, 243, 321, 480 |
| HapII | CCGG | 1 cut(s) | 240 |
| HgaI | GACGC | 1 cut(s) | 90 |
| Hin1II | CATG | 2 cut(s) | 126, 228 |
| HinfI | GANTC | 1 cut(s) | 513 |
| HpaII | CCGG | 1 cut(s) | 240 |
| Hpy188I | TCNGA | 4 cut(s) | 80, 278, 374, 508 |
| Hpy188III | TCNNGA | 1 cut(s) | 177 |
| Hpy99I | CGWCG | 2 cut(s) | 84, 219 |
| HpyAV | CCTTC | 2 cut(s) | 110, 620 |
| HpyCH4III | ACNGT | 1 cut(s) | 143 |
| HpyCH4V | TGCA | 4 cut(s) | 32, 164, 224, 296 |
| HpyF3I | CTNAG | 2 cut(s) | 194, 316 |
| Hsp92II | CATG | 2 cut(s) | 126, 228 |
| KroI | GCCGGC | 1 cut(s) | 239 |
| KroNI | GCCGGC | 1 cut(s) | 241 |
| Ksp22I | TGATCA | 1 cut(s) | 425 |
| Kzo9I | GATC | 2 cut(s) | 173, 425 |
| LmnI | GCTCC | 4 cut(s) | 131, 281, 302, 580 |
| Lsp1109I | GCAGC | 2 cut(s) | 263, 545 |
| LweI | GCATC | 5 cut(s) | 62, 302, 356, 365, 596 |
| MaeI | CTAG | 1 cut(s) | 177 |
| MalI | GATC | 2 cut(s) | 175, 427 |
| MbiI | CCGCTC | 2 cut(s) | 266, 583 |
| MboI | GATC | 2 cut(s) | 173, 425 |
| MboII | GAAGA | 4 cut(s) | 122, 224, 404, 495 |
| MfeI | CAATTG | 1 cut(s) | 345 |
| MhlI | GDGCHC | 1 cut(s) | 286 |
| MlsI | TGGCCA | 2 cut(s) | 205, 480 |
| MluCI | AATT | 2 cut(s) | 228, 345 |
| MluNI | TGGCCA | 2 cut(s) | 205, 480 |
| MlyI | GAGTC | 1 cut(s) | 507 |
| MmeI | TCCRAC | 2 cut(s) | 103, 256 |
| Mox20I | TGGCCA | 2 cut(s) | 205, 480 |
| MroNI | GCCGGC | 1 cut(s) | 239 |
| MscI | TGGCCA | 2 cut(s) | 205, 480 |
| MseI | TTAA | 1 cut(s) | 487 |
| Msp20I | TGGCCA | 2 cut(s) | 205, 480 |
| MspA1I | CMGCKG | 5 cut(s) | 9, 137, 461, 566, 600 |
| MspI | CCGG | 1 cut(s) | 240 |
| MspR9I | CCNGG | 1 cut(s) | 21 |
| MunI | CAATTG | 1 cut(s) | 345 |
| MvaI | CCWGG | 1 cut(s) | 21 |
| MvnI | CGCG | 1 cut(s) | 84 |
| NaeI | GCCGGC | 1 cut(s) | 241 |
| NdeII | GATC | 2 cut(s) | 173, 425 |
| NgoMIV | GCCGGC | 1 cut(s) | 239 |
| NlaIII | CATG | 2 cut(s) | 126, 228 |
| NlaIV | GGNNCC | 2 cut(s) | 14, 98 |
| NmeAIII | GCCGAG | 1 cut(s) | 557 |
| NspI | RCATGY | 1 cut(s) | 126 |
| PaeI | GCATGC | 1 cut(s) | 126 |
| PdiI | GCCGGC | 1 cut(s) | 241 |
| PkrI | GCNGC | 8 cut(s) | 8, 191, 253, 268, 343, 560, 599, 626 |
| PleI | GAGTC | 1 cut(s) | 507 |
| PpsI | GAGTC | 1 cut(s) | 507 |
| Psp124BI | GAGCTC | 1 cut(s) | 286 |
| Psp6I | CCWGG | 1 cut(s) | 19 |
| PspFI | CCCAGC | 1 cut(s) | 562 |
| PspGI | CCWGG | 1 cut(s) | 19 |
| PspN4I | GGNNCC | 2 cut(s) | 14, 98 |
| PspPI | GGNCC | 1 cut(s) | 97 |
| PvuII | CAGCTG | 2 cut(s) | 461, 566 |
| SacI | GAGCTC | 1 cut(s) | 286 |
| SaqAI | TTAA | 1 cut(s) | 487 |
| SatI | GCNGC | 8 cut(s) | 7, 190, 252, 267, 342, 559, 598, 625 |
| Sau3AI | GATC | 2 cut(s) | 173, 425 |
| Sau96I | GGNCC | 1 cut(s) | 97 |
| SchI | GAGTC | 1 cut(s) | 507 |
| ScrFI | CCNGG | 1 cut(s) | 21 |
| SduI | GDGCHC | 1 cut(s) | 286 |
| SfaNI | GCATC | 5 cut(s) | 62, 302, 356, 365, 596 |
| SfcI | CTRYAG | 1 cut(s) | 517 |
| SmlI | CTYRAG | 1 cut(s) | 414 |
| SmoI | CTYRAG | 1 cut(s) | 414 |
| SphI | GCATGC | 1 cut(s) | 126 |
| Sse9I | AATT | 2 cut(s) | 228, 345 |
| SspMI | CTAG | 1 cut(s) | 177 |
| SstI | GAGCTC | 1 cut(s) | 286 |
| StyD4I | CCNGG | 1 cut(s) | 19 |
| StyI | CCWWGG | 2 cut(s) | 352, 481 |
| TaaI | ACNGT | 1 cut(s) | 143 |
| TaqI | TCGA | 3 cut(s) | 246, 286, 403 |
| TasI | AATT | 2 cut(s) | 228, 345 |
| TauI | GCSGC | 6 cut(s) | 9, 192, 269, 344, 600, 627 |
| Tru1I | TTAA | 1 cut(s) | 487 |
| Tru9I | TTAA | 1 cut(s) | 487 |
| TseI | GCWGC | 2 cut(s) | 251, 558 |
| TspDTI | ATGAA | 1 cut(s) | 241 |
| TspGWI | ACGGA | 1 cut(s) | 203 |
| XapI | RAATTY | 1 cut(s) | 228 |
| XbaI | TCTAGA | 1 cut(s) | 176 |
| XceI | RCATGY | 1 cut(s) | 126 |
| XspI | CTAG | 1 cut(s) | 177 |