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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 416 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 426 |
| AccBSI | CCGCTC | 2 cut(s) | 124, 136 |
| AccII | CGCG | 1 cut(s) | 99 |
| AclWI | GGATC | 2 cut(s) | 211, 224 |
| AcuI | CTGAAG | 2 cut(s) | 206, 425 |
| AcyI | GRCGYC | 1 cut(s) | 417 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 70, 226, 307, 426 |
| AgsI | TTSAA | 3 cut(s) | 56, 181, 293 |
| AluBI | AGCT | 1 cut(s) | 106 |
| AluI | AGCT | 1 cut(s) | 106 |
| Alw26I | GTCTC | 2 cut(s) | 14, 23 |
| AlwI | GGATC | 2 cut(s) | 211, 224 |
| Ama87I | CYCGRG | 1 cut(s) | 131 |
| AspLEI | GCGC | 1 cut(s) | 419 |
| AspS9I | GGNCC | 1 cut(s) | 127 |
| AsuC2I | CCSGG | 2 cut(s) | 280, 451 |
| AsuHPI | GGTGA | 2 cut(s) | 265, 442 |
| AvaI | CYCGRG | 1 cut(s) | 131 |
| AvaII | GGWCC | 1 cut(s) | 127 |
| BamHI | GGATCC | 1 cut(s) | 216 |
| BanI | GGYRCC | 1 cut(s) | 416 |
| BbvCI | CCTCAGC | 1 cut(s) | 249 |
| BccI | CCATC | 2 cut(s) | 355, 428 |
| BcnI | CCSGG | 2 cut(s) | 280, 451 |
| BcoDI | GTCTC | 2 cut(s) | 14, 23 |
| BfaI | CTAG | 1 cut(s) | 158 |
| BfoI | RGCGCY | 1 cut(s) | 420 |
| BisI | GCNGC | 4 cut(s) | 100, 195, 369, 387 |
| BlsI | GCNGC | 4 cut(s) | 101, 196, 370, 388 |
| Bme1390I | CCNGG | 2 cut(s) | 280, 451 |
| Bme18I | GGWCC | 1 cut(s) | 127 |
| BmeT110I | CYCGRG | 1 cut(s) | 131 |
| BmgT120I | GGNCC | 1 cut(s) | 127 |
| BmiI | GGNNCC | 5 cut(s) | 128, 218, 418, 471, 489 |
| BmrFI | CCNGG | 2 cut(s) | 280, 451 |
| BmrI | ACTGGG | 1 cut(s) | 436 |
| BmsI | GCATC | 1 cut(s) | 82 |
| BmuI | ACTGGG | 1 cut(s) | 436 |
| BpmI | CTGGAG | 1 cut(s) | 284 |
| Bpu10I | CCTNAGC | 2 cut(s) | 198, 249 |
| BpuMI | CCSGG | 2 cut(s) | 280, 451 |
| BsaHI | GRCGYC | 1 cut(s) | 417 |
| BsaI | GGTCTC | 2 cut(s) | 14, 23 |
| BsaJI | CCNNGG | 3 cut(s) | 69, 97, 318 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 134, 164 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 70, 226, 307, 426 |
| Bse1I | ACTGG | 1 cut(s) | 431 |
| BseDI | CCNNGG | 3 cut(s) | 69, 97, 318 |
| BseGI | GGATG | 1 cut(s) | 97 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 70, 226, 307, 426 |
| BseMII | CTCAG | 2 cut(s) | 240, 297 |
| BseNI | ACTGG | 1 cut(s) | 431 |
| BseRI | GAGGAG | 1 cut(s) | 338 |
| Bsh1236I | CGCG | 1 cut(s) | 99 |
| BshNI | GGYRCC | 1 cut(s) | 416 |
| BsiHKCI | CYCGRG | 1 cut(s) | 131 |
| BsiSI | CCGG | 2 cut(s) | 280, 450 |
| BslFI | GGGAC | 3 cut(s) | 140, 242, 424 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 70, 226, 307, 426 |
| BsmAI | GTCTC | 2 cut(s) | 14, 23 |
| BsmFI | GGGAC | 3 cut(s) | 140, 242, 424 |
| BsmI | GAATGC | 1 cut(s) | 83 |
| Bso31I | GGTCTC | 2 cut(s) | 14, 23 |
| BsoBI | CYCGRG | 1 cut(s) | 131 |
| Bsp143I | GATC | 2 cut(s) | 184, 216 |
| Bsp19I | CCATGG | 1 cut(s) | 318 |
| BspCNI | CTCAG | 2 cut(s) | 241, 298 |
| BspFNI | CGCG | 1 cut(s) | 99 |
| BspLI | GGNNCC | 5 cut(s) | 128, 218, 418, 471, 489 |
| BspPI | GGATC | 2 cut(s) | 211, 224 |
| BspT107I | GGYRCC | 1 cut(s) | 416 |
| BspTNI | GGTCTC | 2 cut(s) | 14, 23 |
| BsrBI | CCGCTC | 2 cut(s) | 124, 136 |
| BsrI | ACTGG | 1 cut(s) | 431 |
| BssECI | CCNNGG | 3 cut(s) | 69, 97, 318 |
| BssMI | GATC | 2 cut(s) | 184, 216 |
| BssNI | GRCGYC | 1 cut(s) | 417 |
| BssT1I | CCWWGG | 2 cut(s) | 69, 318 |
| Bst4CI | ACNGT | 1 cut(s) | 49 |
| Bst6I | CTCTTC | 1 cut(s) | 251 |
| BstACI | GRCGYC | 1 cut(s) | 417 |
| BstC8I | GCNNGC | 5 cut(s) | 97, 104, 354, 474, 478 |
| BstDEI | CTNAG | 5 cut(s) | 198, 204, 249, 306, 394 |
| BstDSI | CCRYGG | 2 cut(s) | 97, 318 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 68 |
| BstF5I | GGATG | 1 cut(s) | 97 |
| BstFNI | CGCG | 1 cut(s) | 99 |
| BstH2I | RGCGCY | 1 cut(s) | 420 |
| BstHHI | GCGC | 1 cut(s) | 419 |
| BstKTI | GATC | 2 cut(s) | 187, 219 |
| BstMAI | GTCTC | 2 cut(s) | 14, 23 |
| BstMBI | GATC | 2 cut(s) | 184, 216 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 92, 200, 245, 374, 383 |
| BstNSI | RCATGY | 1 cut(s) | 403 |
| BstSCI | CCNGG | 2 cut(s) | 278, 449 |
| BstUI | CGCG | 1 cut(s) | 99 |
| BstX2I | RGATCY | 1 cut(s) | 216 |
| BstYI | RGATCY | 1 cut(s) | 216 |
| BtgI | CCRYGG | 2 cut(s) | 97, 318 |
| BtsCI | GGATG | 1 cut(s) | 97 |
| BtsI | GCAGTG | 1 cut(s) | 487 |
| BtsIMutI | CAGTG | 1 cut(s) | 487 |
| Cac8I | GCNNGC | 5 cut(s) | 97, 104, 354, 474, 478 |
| CfoI | GCGC | 1 cut(s) | 419 |
| Cfr13I | GGNCC | 1 cut(s) | 127 |
| Cfr42I | CCGCGG | 1 cut(s) | 100 |
| CseI | GACGC | 2 cut(s) | 92, 426 |
| CviAII | CATG | 4 cut(s) | 319, 358, 400, 493 |
| DdeI | CTNAG | 5 cut(s) | 198, 204, 249, 306, 394 |
| DinI | GGCGCC | 1 cut(s) | 418 |
| DpnI | GATC | 2 cut(s) | 186, 218 |
| DpnII | GATC | 2 cut(s) | 184, 216 |
| DraI | TTTAAA | 1 cut(s) | 331 |
| Eam1104I | CTCTTC | 1 cut(s) | 251 |
| EarI | CTCTTC | 1 cut(s) | 251 |
| Eco130I | CCWWGG | 2 cut(s) | 69, 318 |
| Eco31I | GGTCTC | 2 cut(s) | 14, 23 |
| Eco47I | GGWCC | 1 cut(s) | 127 |
| Eco57I | CTGAAG | 2 cut(s) | 206, 425 |
| Eco88I | CYCGRG | 1 cut(s) | 131 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 68 |
| EcoO109I | RGGNCCY | 1 cut(s) | 127 |
| EcoT14I | CCWWGG | 2 cut(s) | 69, 318 |
| EgeI | GGCGCC | 1 cut(s) | 418 |
| EheI | GGCGCC | 1 cut(s) | 418 |
| ErhI | CCWWGG | 2 cut(s) | 69, 318 |
| FaeI | CATG | 4 cut(s) | 322, 361, 403, 496 |
| FaiI | YATR | 7 cut(s) | 89, 170, 320, 348, 359, 401, 494 |
| FaqI | GGGAC | 3 cut(s) | 140, 242, 424 |
| FatI | CATG | 4 cut(s) | 318, 357, 399, 492 |
| FauI | CCCGC | 4 cut(s) | 104, 117, 219, 459 |
| Fnu4HI | GCNGC | 4 cut(s) | 100, 195, 369, 387 |
| FokI | GGATG | 1 cut(s) | 104 |
| Fsp4HI | GCNGC | 4 cut(s) | 100, 195, 369, 387 |
| FspBI | CTAG | 1 cut(s) | 158 |
| GlaI | GCGC | 1 cut(s) | 418 |
| GluI | GCNGC | 4 cut(s) | 100, 195, 369, 387 |
| GsuI | CTGGAG | 1 cut(s) | 284 |
| HaeII | RGCGCY | 1 cut(s) | 420 |
| HapII | CCGG | 2 cut(s) | 280, 450 |
| HgaI | GACGC | 2 cut(s) | 92, 426 |
| HhaI | GCGC | 1 cut(s) | 419 |
| Hin1I | GRCGYC | 1 cut(s) | 417 |
| Hin1II | CATG | 4 cut(s) | 322, 361, 403, 496 |
| Hin6I | GCGC | 1 cut(s) | 417 |
| HinP1I | GCGC | 1 cut(s) | 417 |
| HinfI | GANTC | 1 cut(s) | 230 |
| HpaII | CCGG | 2 cut(s) | 280, 450 |
| HphI | GGTGA | 2 cut(s) | 265, 442 |
| Hpy188I | TCNGA | 1 cut(s) | 307 |
| Hpy188III | TCNNGA | 1 cut(s) | 13 |
| Hpy99I | CGWCG | 1 cut(s) | 86 |
| HpyAV | CCTTC | 3 cut(s) | 202, 230, 406 |
| HpyCH4III | ACNGT | 1 cut(s) | 49 |
| HpyCH4V | TGCA | 1 cut(s) | 25 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 92, 200, 245, 374, 383 |
| HpyF3I | CTNAG | 5 cut(s) | 198, 204, 249, 306, 394 |
| Hsp92I | GRCGYC | 1 cut(s) | 417 |
| Hsp92II | CATG | 4 cut(s) | 322, 361, 403, 496 |
| HspAI | GCGC | 1 cut(s) | 417 |
| KasI | GGCGCC | 1 cut(s) | 416 |
| KspI | CCGCGG | 1 cut(s) | 100 |
| Kzo9I | GATC | 2 cut(s) | 184, 216 |
| LmnI | GCTCC | 1 cut(s) | 469 |
| LweI | GCATC | 1 cut(s) | 82 |
| MaeI | CTAG | 1 cut(s) | 158 |
| MalI | GATC | 2 cut(s) | 186, 218 |
| MbiI | CCGCTC | 2 cut(s) | 124, 136 |
| MboI | GATC | 2 cut(s) | 184, 216 |
| MboII | GAAGA | 1 cut(s) | 268 |
| MflI | RGATCY | 1 cut(s) | 216 |
| Mly113I | GGCGCC | 1 cut(s) | 417 |
| MlyI | GAGTC | 1 cut(s) | 224 |
| MnlI | CCTC | 9 cut(s) | 9, 140, 244, 252, 259, 265, 301, 316, 358 |
| MseI | TTAA | 1 cut(s) | 330 |
| MspA1I | CMGCKG | 3 cut(s) | 99, 226, 466 |
| MspI | CCGG | 2 cut(s) | 280, 450 |
| MspR9I | CCNGG | 2 cut(s) | 280, 451 |
| MssI | GTTTAAAC | 1 cut(s) | 331 |
| Mva1269I | GAATGC | 1 cut(s) | 83 |
| MvnI | CGCG | 1 cut(s) | 99 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 92, 200, 245, 374, 383 |
| NarI | GGCGCC | 1 cut(s) | 417 |
| NciI | CCSGG | 2 cut(s) | 280, 451 |
| NcoI | CCATGG | 1 cut(s) | 318 |
| NdeII | GATC | 2 cut(s) | 184, 216 |
| NlaIII | CATG | 4 cut(s) | 322, 361, 403, 496 |
| NlaIV | GGNNCC | 5 cut(s) | 128, 218, 418, 471, 489 |
| NspI | RCATGY | 1 cut(s) | 403 |
| PaeR7I | CTCGAG | 1 cut(s) | 131 |
| PctI | GAATGC | 1 cut(s) | 83 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 426 |
| PkrI | GCNGC | 4 cut(s) | 101, 196, 370, 388 |
| PleI | GAGTC | 1 cut(s) | 224 |
| PluTI | GGCGCC | 1 cut(s) | 420 |
| PmeI | GTTTAAAC | 1 cut(s) | 331 |
| PpsI | GAGTC | 1 cut(s) | 224 |
| PpuMI | RGGWCCY | 1 cut(s) | 127 |
| Psp5II | RGGWCCY | 1 cut(s) | 127 |
| PspN4I | GGNNCC | 5 cut(s) | 128, 218, 418, 471, 489 |
| PspPI | GGNCC | 1 cut(s) | 127 |
| PspPPI | RGGWCCY | 1 cut(s) | 127 |
| PspXI | VCTCGAGB | 1 cut(s) | 131 |
| PsuI | RGATCY | 1 cut(s) | 216 |
| SacII | CCGCGG | 1 cut(s) | 100 |
| SaqAI | TTAA | 1 cut(s) | 330 |
| SatI | GCNGC | 4 cut(s) | 100, 195, 369, 387 |
| Sau3AI | GATC | 2 cut(s) | 184, 216 |
| Sau96I | GGNCC | 1 cut(s) | 127 |
| SchI | GAGTC | 1 cut(s) | 224 |
| ScrFI | CCNGG | 2 cut(s) | 280, 451 |
| SetI | ASST | 8 cut(s) | 10, 66, 108, 132, 213, 255, 276, 312 |
| SfaNI | GCATC | 1 cut(s) | 82 |
| SfoI | GGCGCC | 1 cut(s) | 418 |
| Sfr274I | CTCGAG | 1 cut(s) | 131 |
| Sfr303I | CCGCGG | 1 cut(s) | 100 |
| SgrBI | CCGCGG | 1 cut(s) | 100 |
| SinI | GGWCC | 1 cut(s) | 127 |
| SlaI | CTCGAG | 1 cut(s) | 131 |
| SmlI | CTYRAG | 1 cut(s) | 131 |
| SmoI | CTYRAG | 1 cut(s) | 131 |
| SspDI | GGCGCC | 1 cut(s) | 416 |
| SspMI | CTAG | 1 cut(s) | 158 |
| StyD4I | CCNGG | 2 cut(s) | 278, 449 |
| StyI | CCWWGG | 2 cut(s) | 69, 318 |
| TaaI | ACNGT | 1 cut(s) | 49 |
| TaqI | TCGA | 2 cut(s) | 132, 423 |
| TauI | GCSGC | 4 cut(s) | 102, 197, 371, 389 |
| Tru1I | TTAA | 1 cut(s) | 330 |
| Tru9I | TTAA | 1 cut(s) | 330 |
| TscAI | CASTG | 1 cut(s) | 487 |
| TspRI | CASTG | 1 cut(s) | 487 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 426 |
| VpaK11BI | GGWCC | 1 cut(s) | 127 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 68 |
| XceI | RCATGY | 1 cut(s) | 403 |
| XhoI | CTCGAG | 1 cut(s) | 131 |
| XspI | CTAG | 1 cut(s) | 158 |